From 996cdf5ee3f85ae0161d86a687726621fe4a364e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie-Ang=C3=A9lique=20Laporte?= <marieangelique.laporte@gmail.com> Date: Wed, 2 Nov 2022 13:50:28 +0100 Subject: [PATCH] fixing obsolete terms and release --- agro.owl | 4 +-- imports/envo_terms.txt | 67 ++++++++++++++++++++++++++++++++++++-- src/ontology/agro-edit.owl | 4 +-- src/ontology/agro.owl | 4 +-- 4 files changed, 71 insertions(+), 8 deletions(-) diff --git a/agro.owl b/agro.owl index 8d69ea1..9a5e0d3 100644 --- a/agro.owl +++ b/agro.owl @@ -14062,7 +14062,7 @@ chain and sprockets from the ground wheel.</owl:annotatedTarget> <obo1:IAO_0000115 xml:lang="en">The amount of a pesticide</obo1:IAO_0000115> <dc:creator rdf:resource="http://orcid.org/0000-0001-6284-4821"/> <rdfs:label xml:lang="en">obsolete pesticide amount</rdfs:label> - <owl:deprecated xml:lang="en">true</owl:deprecated> + <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated> </owl:Class> @@ -14109,7 +14109,7 @@ chain and sprockets from the ground wheel.</owl:annotatedTarget> <obo1:IAO_0000115 xml:lang="en">The amount of a weeding chemical</obo1:IAO_0000115> <dc:creator rdf:resource="http://orcid.org/0000-0001-6284-4821"/> <rdfs:label xml:lang="en">obsolete weeding chemical amount</rdfs:label> - <owl:deprecated xml:lang="en">true</owl:deprecated> + <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated> </owl:Class> diff --git a/imports/envo_terms.txt b/imports/envo_terms.txt index c37f281..adeddfc 100644 --- a/imports/envo_terms.txt +++ b/imports/envo_terms.txt @@ -141,9 +141,72 @@ http://purl.obolibrary.org/obo/ENVO_09200016 ## conductivity of soil http://purl.obolibrary.org/obo/ENVO_09000027 ## soil salt concentration http://purl.obolibrary.org/obo/ENVO_03600018 ## organic horizon http://purl.obolibrary.org/obo/ENVO_03000129 ## mooson season +http://purl.obolibrary.org/obo/ENVO_06105300 ## wastewater treatment process +http://purl.obolibrary.org/obo/ENVO_06105301 ## desalination process +http://purl.obolibrary.org/obo/ENVO_01000896 ## freezing rainfall +http://purl.obolibrary.org/obo/ENVO_01001363 ## volume of hydrological precipitation +http://purl.obolibrary.org/obo/ENVO_09200022 ## sunshine hours +http://purl.obolibrary.org/obo/ENVO_01001361 ## amospheric wind direction +http://purl.obolibrary.org/obo/ENVO_09200010 ## acidity of soil +http://purl.obolibrary.org/obo/ENVO_00010005 ## soil bulk density +http://purl.obolibrary.org/obo/ENVO_06105201 ## water table +http://purl.obolibrary.org/obo/ENVO_06105202 ## soil compaction +http://purl.obolibrary.org/obo/ENVO_06105203 ## water table depth +http://purl.obolibrary.org/obo/ENVO_06105204 ## photosynthetic photon flux density +http://purl.obolibrary.org/obo/ENVO_06105205 ## compacted soil +http://purl.obolibrary.org/obo/ENVO_06105210 ## soil percolation rate +http://purl.obolibrary.org/obo/ENVO_06105211 ## runoff +http://purl.obolibrary.org/obo/ENVO_06105213 ## photosynthetic photon flux +http://purl.obolibrary.org/obo/ENVO_06105215 ## rainy day count +http://purl.obolibrary.org/obo/ENVO_06105225 ## soil layer top depth +http://purl.obolibrary.org/obo/ENVO_06105226 ## soil layer bottom depth +http://purl.obolibrary.org/obo/ENVO_06105230 ## water infiltration +http://purl.obolibrary.org/obo/ENVO_06105231 ## water infiltration into soil +http://purl.obolibrary.org/obo/ENVO_06105232 ## soil albedo +http://purl.obolibrary.org/obo/ENVO_06105233 ## dry soil albedo +http://purl.obolibrary.org/obo/ENVO_06105234 ## moist soil albedo +http://purl.obolibrary.org/obo/ENVO_06105236 ## exchangeable ion +http://purl.obolibrary.org/obo/ENVO_06105237 ## exchangeable potassium +http://purl.obolibrary.org/obo/ENVO_06105238 ## residual water in soil +http://purl.obolibrary.org/obo/ENVO_06105239 ## exchangeable calcium +http://purl.obolibrary.org/obo/ENVO_06105240 ## cation exchange capacity +http://purl.obolibrary.org/obo/ENVO_06105241 ## soil drainage +http://purl.obolibrary.org/obo/ENVO_06105242 ## basic cation exchange capacity +http://purl.obolibrary.org/obo/ENVO_06105265 ## net shortwave radiation +http://purl.obolibrary.org/obo/ENVO_06105266 ## soil layer +http://purl.obolibrary.org/obo/ENVO_06105267 ## soil profile characterization http://purl.obolibrary.org/obo/ENVO_06105268 ## treated wastewater http://purl.obolibrary.org/obo/ENVO_06105269 ## desalinated water +http://purl.obolibrary.org/obo/ENVO_06105271 ## soil texture +http://purl.obolibrary.org/obo/ENVO_06105272 ## loamy sand +http://purl.obolibrary.org/obo/ENVO_06105273 ## fine sand +http://purl.obolibrary.org/obo/ENVO_06105274 ## sandy loam +http://purl.obolibrary.org/obo/ENVO_06105275 ## silty loam +http://purl.obolibrary.org/obo/ENVO_06105276 ## sandy clay loam +http://purl.obolibrary.org/obo/ENVO_06105277 ## clay loam +http://purl.obolibrary.org/obo/ENVO_06105278 ## silty clay loam +http://purl.obolibrary.org/obo/ENVO_06105279 ## sandy clay +http://purl.obolibrary.org/obo/ENVO_06105280 ## silty clay http://purl.obolibrary.org/obo/ENVO_06105300 ## wastewater treatment process http://purl.obolibrary.org/obo/ENVO_06105301 ## desalination process -http://purl.obolibrary.org/obo/ENVO_01000896 ## freezing rainfall -http://purl.obolibrary.org/obo/ENVO_01001363 ## volume of hydrological precipitation \ No newline at end of file +http://purl.obolibrary.org/obo/ENVO_06105302 ## field capacity +http://purl.obolibrary.org/obo/ENVO_06105303 ## permanent wilting point +http://purl.obolibrary.org/obo/ENVO_06105304 ## water-holding capacity of soil +http://purl.obolibrary.org/obo/ENVO_09000028 ## evaporation of liquid water in soil +http://purl.obolibrary.org/obo/ENVO_09000026 ## concentration of liquid water in soil +http://purl.obolibrary.org/obo/ENVO_09000029 ## rate of hydrological evaporation in soil +http://purl.obolibrary.org/obo/ENVO_09200020 ## concentration of nitrate in groundwater +http://purl.obolibrary.org/obo/ENVO_1000745 ## drought +http://purl.obolibrary.org/obo/ENVO_2000003 ## agricultural wastewater treatment plant +http://purl.obolibrary.org/obo/ENVO_2000007 ## biochar +http://purl.obolibrary.org/obo/ENVO_01001865 ## concentration of carbon dioxide in an atmosphere +http://purl.obolibrary.org/obo/ENVO_01001862 ## Solar radiation +http://purl.obolibrary.org/obo/ENVO_01000706 ## soil erosion +http://purl.obolibrary.org/obo/ENVO_04000008 ## soil organic matter +http://purl.obolibrary.org/obo/ENVO_03000123 ## concentration of nitrate and nitrite in liquid water +http://purl.obolibrary.org/obo/ENVO_04000003 ## concentration of carbon dioxide in soil +http://purl.obolibrary.org/obo/ENVO_04000004 ## concentration of carbon dioxide in air +http://purl.obolibrary.org/obo/ENVO_09000026 ## concentration of liquid water in soil +http://purl.obolibrary.org/obo/ENVO_09000028 ## evaporation of liquid water in soil +http://purl.obolibrary.org/obo/ENVO_09000029 ## rate of hydrological evaporation in soil +http://purl.obolibrary.org/obo/ENVO_09200020 ## concentration of nitrate in groundwater \ No newline at end of file diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 71a2432..b94e2a5 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4626,7 +4626,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000559> <http://purl.obolibrar AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000560> "The amount of a pesticide"@en) AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000560> <http://orcid.org/0000-0001-6284-4821>) AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000560> "obsolete pesticide amount"@en) -AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/AGRO_00000560> "true"@en) +AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/AGRO_00000560> "true"^^xsd:boolean) # Class: <http://purl.obolibrary.org/obo/AGRO_00000561> (number of pesticide application) @@ -4649,7 +4649,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000562> <http://purl.obolibrar AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000563> "The amount of a weeding chemical"@en) AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000563> <http://orcid.org/0000-0001-6284-4821>) AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000563> "obsolete weeding chemical amount"@en) -AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/AGRO_00000563> "true"@en) +AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/AGRO_00000563> "true"^^xsd:boolean) # Class: <http://purl.obolibrary.org/obo/AGRO_00000564> (distance between the water source and the field) diff --git a/src/ontology/agro.owl b/src/ontology/agro.owl index 8d69ea1..9a5e0d3 100644 --- a/src/ontology/agro.owl +++ b/src/ontology/agro.owl @@ -14062,7 +14062,7 @@ chain and sprockets from the ground wheel.</owl:annotatedTarget> <obo1:IAO_0000115 xml:lang="en">The amount of a pesticide</obo1:IAO_0000115> <dc:creator rdf:resource="http://orcid.org/0000-0001-6284-4821"/> <rdfs:label xml:lang="en">obsolete pesticide amount</rdfs:label> - <owl:deprecated xml:lang="en">true</owl:deprecated> + <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated> </owl:Class> @@ -14109,7 +14109,7 @@ chain and sprockets from the ground wheel.</owl:annotatedTarget> <obo1:IAO_0000115 xml:lang="en">The amount of a weeding chemical</obo1:IAO_0000115> <dc:creator rdf:resource="http://orcid.org/0000-0001-6284-4821"/> <rdfs:label xml:lang="en">obsolete weeding chemical amount</rdfs:label> - <owl:deprecated xml:lang="en">true</owl:deprecated> + <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated> </owl:Class>