Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Version 2.0.10 doesn't recognize lowercase iupac nucleotide codes #316

Open
gibbipicasso opened this issue Oct 27, 2023 · 0 comments
Open

Version 2.0.10 doesn't recognize lowercase iupac nucleotide codes #316

gibbipicasso opened this issue Oct 27, 2023 · 0 comments

Comments

@gibbipicasso
Copy link

Screenshot 2023-10-26 at 3 43 33 PM Changing the case of alignment from lowercase to uppercase fixed the issue: awk 'BEGIN{FS=" "}{if(!/>/){print toupper($0)}else{print $1}}' x.fasta > out.fasta
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@gibbipicasso