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Gemfile.lock
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GIT
remote: https://github.com/SysMO-DB/bioportal.git
revision: 5b2f2e506a406a002413424de9b37177e4d2df0b
specs:
bioportal (3.0)
GIT
remote: https://github.com/SysMO-DB/fleximage.git
revision: de03bf816a911dc4f69573fd300d4ff90225cca7
ref: de03bf816a911dc4f69573fd300d4ff90225cca7
specs:
fleximage (0.1)
GIT
remote: https://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
remote: https://github.com/seek4science/DOI-query-tool.git
revision: 7c2ba934885ad404d964cd371e236d3348efb63c
specs:
doi_query_tool (1.0.1)
libxml-ruby (>= 2.6.0)
GIT
remote: https://github.com/seek4science/zenodo-client.git
revision: 72c19d105ec2aab5298bf6c5bd50d30c798f169e
specs:
zenodo-client (0.3.0)
rest-client (~> 2.0)
GIT
remote: https://github.com/tuttiq/docsplit.git
revision: 6127e3912b8db94ed84dca6be5622d3d5ec0d879
ref: 6127e3912b8db94ed84dca6be5622d3d5ec0d879
specs:
docsplit (0.7.6)
GIT
remote: https://github.com/youroute/api_smith.git
revision: 1fb428cebc17b9afab25ac9f809bde87b0ec315b
ref: 1fb428cebc17b9afab25ac9f809bde87b0ec315b
specs:
api_smith (1.3.0)
hashie (>= 1.0, < 4.0)
httparty
GEM
remote: https://rubygems.org/
specs:
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mail (>= 2.7.1)
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mail (~> 2.5, >= 2.5.4)
rails-dom-testing (~> 2.0)
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actionview (= 6.1.7.6)
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rack (~> 2.0, >= 2.0.9)
rack-test (>= 0.6.3)
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rdf-n3 (~> 3.2)
rdf-normalize (~> 0.5)
rdf-ordered-repo (~> 3.2)
rdf-rdfa (~> 3.2)
rdf-rdfxml (~> 3.2)
rdf-reasoner (~> 0.8)
rdf-tabular (~> 3.2)
rdf-trig (~> 3.2)
rdf-trix (~> 3.2)
rdf-turtle (~> 3.2)
rdf-vocab (~> 3.2)
rdf-xsd (~> 3.2)
shacl (~> 0.2)
shex (~> 0.7)
sparql (~> 3.2)
sparql-client (~> 3.2)
listen (3.7.1)
rb-fsevent (~> 0.10, >= 0.10.3)
rb-inotify (~> 0.9, >= 0.9.10)
logger (1.5.0)
lograge (0.11.2)
actionpack (>= 4)
activesupport (>= 4)
railties (>= 4)
request_store (~> 1.0)
loofah (2.21.3)
crass (~> 1.0.2)
nokogiri (>= 1.12.0)
macaddr (1.7.2)
systemu (~> 2.6.5)
magic_lamp (1.9.0)
method_source
rails (>= 4.0.0)
rake
mail (2.8.1)
mini_mime (>= 0.1.1)
net-imap
net-pop
net-smtp
marcel (1.0.2)
matrix (0.4.2)
mechanize (2.8.5)
addressable (~> 2.8)
domain_name (~> 0.5, >= 0.5.20190701)
http-cookie (~> 1.0, >= 1.0.3)
mime-types (~> 3.0)
net-http-digest_auth (~> 1.4, >= 1.4.1)
net-http-persistent (>= 2.5.2, < 5.0.dev)
nokogiri (~> 1.11, >= 1.11.2)
rubyntlm (~> 0.6, >= 0.6.3)
webrick (~> 1.7)
webrobots (~> 0.1.2)
metainspector (5.11.2)
addressable (~> 2.7)
faraday (~> 1.4)
faraday-cookie_jar (~> 0.0)
faraday-encoding (~> 0.0)
faraday-http-cache (~> 2.2)
faraday_middleware (~> 1.0)
fastimage (~> 2.2)
nesty (~> 1.0)
nokogiri (~> 1.11)
method_source (1.0.0)
mime-types (3.4.1)
mime-types-data (~> 3.2015)
mime-types-data (3.2022.0105)
mimemagic (0.3.10)
nokogiri (~> 1)
rake
mini_mime (1.1.5)
mini_portile2 (2.8.4)
minitest (5.20.0)
minitest-reporters (1.5.0)
ansi
builder
minitest (>= 5.0)
ruby-progressbar
msgpack (1.4.4)
multi_json (1.15.0)
multi_xml (0.6.0)
multipart-post (2.3.0)
mysql2 (0.5.3)
namae (1.1.1)
nesty (1.0.2)
net-ftp (0.2.0)
net-protocol
time
net-http-digest_auth (1.4.1)
net-http-persistent (4.0.1)
connection_pool (~> 2.2)
net-imap (0.3.7)
date
net-protocol
net-ldap (0.17.1)
net-pop (0.1.2)
net-protocol
net-protocol (0.2.1)
timeout
net-smtp (0.3.3)
net-protocol
netrc (0.11.0)
nio4r (2.7.0)
nokogiri (1.14.5)
mini_portile2 (~> 2.8.0)
racc (~> 1.4)
nori (1.1.5)
oauth2 (2.0.9)
faraday (>= 0.17.3, < 3.0)
jwt (>= 1.0, < 3.0)
multi_xml (~> 0.5)
rack (>= 1.2, < 4)
snaky_hash (~> 2.0)
version_gem (~> 1.1)
octokit (6.1.1)
faraday (>= 1, < 3)
sawyer (~> 0.9)
omniauth (2.1.0)
hashie (>= 3.4.6)
rack (>= 2.2.3)
rack-protection
omniauth-github (2.0.0)
omniauth (~> 2.0)
omniauth-oauth2 (~> 1.7.1)
omniauth-oauth2 (1.7.3)
oauth2 (>= 1.4, < 3)
omniauth (>= 1.9, < 3)
omniauth-rails_csrf_protection (1.0.1)
actionpack (>= 4.2)
omniauth (~> 2.0)
omniauth_openid_connect (0.4.0)
addressable (~> 2.5)
omniauth (>= 1.9, < 3)
openid_connect (~> 1.1)
open4 (1.3.0)
openid_connect (1.3.0)
activemodel
attr_required (>= 1.0.0)
json-jwt (>= 1.5.0)
rack-oauth2 (>= 1.6.1)
swd (>= 1.0.0)
tzinfo
validate_email
validate_url
webfinger (>= 1.0.1)
openseek-api (0.18)
terrapin
options (2.3.2)
parallel (1.21.0)
parser (3.1.0.0)
ast (~> 2.4.1)
passenger (6.0.12)
rack
rake (>= 0.8.1)
pg (1.3.1)
pkg-config (1.5.5)
pothoven-attachment_fu (3.3.2)
pr_geohash (1.0.0)
private_address_check (0.5.0)
progress_bar (1.3.3)
highline (>= 1.6, < 3)
options (~> 2.3.0)
pry (0.14.1)
coderay (~> 1.1)
method_source (~> 1.0)
pry-doc (1.3.0)
pry (~> 0.11)
yard (~> 0.9.11)
pry-remote (0.1.8)
pry (~> 0.9)
slop (~> 3.0)
psych (5.1.0)
stringio
public_suffix (5.0.0)
puma (5.6.8)
nio4r (~> 2.0)
pyu-ruby-sasl (0.0.3.3)
racc (1.7.1)
rack (2.2.8)
rack-attack (6.6.0)
rack (>= 1.0, < 3)
rack-cors (1.1.1)
rack (>= 2.0.0)
rack-mini-profiler (2.3.3)
rack (>= 1.2.0)
rack-oauth2 (1.21.3)
activesupport
attr_required
httpclient
json-jwt (>= 1.11.0)
rack (>= 2.1.0)
rack-protection (2.2.2)
rack
rack-test (2.1.0)
rack (>= 1.3)
rails (6.1.7.6)
actioncable (= 6.1.7.6)
actionmailbox (= 6.1.7.6)
actionmailer (= 6.1.7.6)
actionpack (= 6.1.7.6)
actiontext (= 6.1.7.6)
actionview (= 6.1.7.6)
activejob (= 6.1.7.6)
activemodel (= 6.1.7.6)
activerecord (= 6.1.7.6)
activestorage (= 6.1.7.6)
activesupport (= 6.1.7.6)
bundler (>= 1.15.0)
railties (= 6.1.7.6)
sprockets-rails (>= 2.0.0)
rails-controller-testing (1.0.5)
actionpack (>= 5.0.1.rc1)
actionview (>= 5.0.1.rc1)
activesupport (>= 5.0.1.rc1)
rails-dom-testing (2.2.0)
activesupport (>= 5.0.0)
minitest
nokogiri (>= 1.6)
rails-html-sanitizer (1.6.0)
loofah (~> 2.21)
nokogiri (~> 1.14)
rails-observers (0.1.5)
activemodel (>= 4.0)
rails-perftest (0.0.7)
rails-static-router (1.0.6)
railties (>= 5.0, < 7.1)
rails_autolink (1.1.6)
rails (> 3.1)
rails_best_practices (1.23.0)
activesupport (~> 6.1.4)
code_analyzer (~> 0.5.5)
erubis
i18n
json
require_all (~> 3.0)
ruby-progressbar
railties (6.1.7.6)
actionpack (= 6.1.7.6)
activesupport (= 6.1.7.6)
method_source
rake (>= 12.2)
thor (~> 1.0)
rainbow (3.1.1)
raindrops (0.20.0)
rake (13.0.6)
ransack (2.5.0)
activerecord (>= 5.2.4)
activesupport (>= 5.2.4)
i18n
rb-fsevent (0.11.0)
rb-inotify (0.10.1)
ffi (~> 1.0)
rdf (3.2.8)
link_header (~> 0.0, >= 0.0.8)
rdf-aggregate-repo (3.2.0)
rdf (~> 3.2)
rdf-hamster-repo (3.2.1)
hamster (~> 3.0)
rdf (~> 3.2, >= 3.2.1)
rdf-isomorphic (3.2.1)
rdf (~> 3.2)
rdf-json (3.2.0)
rdf (~> 3.2)
rdf-microdata (3.2.0)
htmlentities (~> 4.3)
nokogiri (~> 1.12)
rdf (~> 3.2)
rdf-rdfa (~> 3.2)
rdf-xsd (~> 3.2)
rdf-n3 (3.2.1)
ebnf (~> 2.2)
rdf (~> 3.2)
sparql (~> 3.2)
sxp (~> 1.2)
rdf-normalize (0.5.0)
rdf (~> 3.2)
rdf-ordered-repo (3.2.1)
rdf (~> 3.2, >= 3.2.1)
rdf-rdfa (3.2.0)
haml (~> 5.2)
htmlentities (~> 4.3)
rdf (~> 3.2)
rdf-aggregate-repo (~> 3.2)
rdf-vocab (~> 3.2)
rdf-xsd (~> 3.2)
rdf-rdfxml (3.2.0)
htmlentities (~> 4.3)
rdf (~> 3.2)
rdf-rdfa (~> 3.2)
rdf-xsd (~> 3.2)
rdf-reasoner (0.8.0)
rdf (~> 3.2)
rdf-xsd (~> 3.2)
rdf-tabular (3.2.0)
addressable (~> 2.8)
bcp47 (~> 0.3, >= 0.3.3)
json-ld (~> 3.2)
rdf (~> 3.2)
rdf-vocab (~> 3.2)
rdf-xsd (~> 3.2)
rdf-trig (3.2.0)
ebnf (~> 2.2)
rdf (~> 3.2)
rdf-turtle (~> 3.2)
rdf-trix (3.2.0)
rdf (~> 3.2)
rdf-xsd (~> 3.2)
rdf-turtle (3.2.0)
ebnf (~> 2.3)
rdf (~> 3.2)
rdf-virtuoso (0.3.0)
api_smith (~> 1.3.0)
httparty (~> 0.20)
rdf (~> 3.2)
rdf-vocab (3.2.1)
rdf (~> 3.2, >= 3.2.4)
rdf-xsd (3.2.1)
rdf (~> 3.2)
rexml (~> 3.2)
rdoc (6.5.0)
psych (>= 4.0.0)
recaptcha (4.1.0)
json
regexp_parser (2.2.0)
remotipart (1.4.4)
request-log-analyzer (1.13.4)
request_store (1.5.1)
rack (>= 1.4)
require_all (3.0.0)
responders (3.0.1)
actionpack (>= 5.0)
railties (>= 5.0)
rest-client (2.1.0)
http-accept (>= 1.7.0, < 2.0)
http-cookie (>= 1.0.2, < 2.0)
mime-types (>= 1.16, < 4.0)
netrc (~> 0.8)
reverse_markdown (2.1.1)
nokogiri
rexml (3.2.5)
rfc-822 (0.4.1)
rmagick (5.3.0)
pkg-config (~> 1.4)
ro-bundle (0.3.0)
addressable (~> 2.8.0)
json (~> 2.3.0)
ucf (~> 2.0.2)
uuid (~> 2.3)
ro-crate (0.5.1)
addressable (>= 2.7, < 2.9)
rubyzip (~> 2.0.0)
rsolr (2.5.0)
builder (>= 2.1.2)
faraday (>= 0.9, < 3, != 2.0.0)
rspec-core (3.10.2)
rspec-support (~> 3.10.0)
rspec-expectations (3.10.2)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.10.0)
rspec-mocks (3.10.3)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.10.0)
rspec-rails (5.1.0)
actionpack (>= 5.2)
activesupport (>= 5.2)
railties (>= 5.2)
rspec-core (~> 3.10)
rspec-expectations (~> 3.10)
rspec-mocks (~> 3.10)
rspec-support (~> 3.10)
rspec-support (3.10.3)
rubocop (1.25.0)
parallel (~> 1.10)
parser (>= 3.1.0.0)
rainbow (>= 2.2.2, < 4.0)
regexp_parser (>= 1.8, < 3.0)
rexml
rubocop-ast (>= 1.15.1, < 2.0)
ruby-progressbar (~> 1.7)
unicode-display_width (>= 1.4.0, < 3.0)
rubocop-ast (1.15.1)
parser (>= 3.0.1.1)
ruby-prof (1.4.3)
ruby-progressbar (1.11.0)
ruby2_keywords (0.0.5)
rubyntlm (0.6.3)
rubyzip (2.0.0)
rugged (1.1.0)
sample-template-generator (0.7.0)
rdoc (~> 6.0)
terrapin (~> 0.6)
sass-rails (6.0.0)
sassc-rails (~> 2.1, >= 2.1.1)
sassc (2.4.0)
ffi (~> 1.9)
sassc-rails (2.1.2)
railties (>= 4.0.0)
sassc (>= 2.0)
sprockets (> 3.0)
sprockets-rails
tilt
savon (1.1.0)
akami (~> 1.2.0)
builder (>= 2.1.2)
gyoku (~> 0.4.5)
httpi (~> 1.1.0)
nokogiri (>= 1.4.0)
nori (~> 1.1.0)
wasabi (~> 2.5.0)
sawyer (0.9.2)
addressable (>= 2.3.5)
faraday (>= 0.17.3, < 3)
sax-machine (1.3.2)
scanf (1.0.0)
seedbank (0.5.0)
rake (>= 10.0)
selenium-webdriver (4.1.0)
childprocess (>= 0.5, < 5.0)
rexml (~> 3.2, >= 3.2.5)
rubyzip (>= 1.2.2)
sexp_processor (4.16.0)
shacl (0.2.1)
json-ld (~> 3.2)
rdf (~> 3.2)
sparql (~> 3.2)
sxp (~> 1.2)
shex (0.7.1)
ebnf (~> 2.2)
htmlentities (~> 4.3)
json-ld (~> 3.2)
json-ld-preloaded (~> 3.2)
rdf (~> 3.2)
rdf-xsd (~> 3.2)
sparql (~> 3.2)
sxp (~> 1.2)
simple-spreadsheet-extractor (0.18.0)
libxml-ruby (~> 2.9)
terrapin (~> 0.6)
simplecov (0.21.2)
docile (~> 1.1)
simplecov-html (~> 0.11)
simplecov_json_formatter (~> 0.1)
simplecov-html (0.12.3)
simplecov_json_formatter (0.1.3)
sitemap_generator (6.3.0)
builder (~> 3.0)
slop (3.6.0)
snaky_hash (2.0.0)
hashie
version_gem (~> 1.1)
sparql (3.2.1)
builder (~> 3.2)
ebnf (~> 2.2)
logger (~> 1.4)
rdf (~> 3.2, >= 3.2.3)
rdf-aggregate-repo (~> 3.2)
rdf-xsd (~> 3.2)
sparql-client (~> 3.2)
sxp (~> 1.2, >= 1.2.1)
sparql-client (3.2.0)
net-http-persistent (~> 4.0, >= 4.0.1)
rdf (~> 3.2)
sprockets (4.2.1)
concurrent-ruby (~> 1.0)
rack (>= 2.2.4, < 4)
sprockets-rails (3.4.2)
actionpack (>= 5.2)
activesupport (>= 5.2)
sprockets (>= 3.0.0)
sqlite3 (1.4.2)
stackprof (0.2.25)
stringio (3.0.1)
sunspot (2.6.0)
pr_geohash (~> 1.0)
rsolr (>= 1.1.1, < 3)
sunspot_matchers (2.2.5.0)
sunspot_rails (2.6.0)
rails (>= 3)
sunspot (= 2.6.0)
swd (1.3.0)
activesupport (>= 3)
attr_required (>= 0.0.5)
httpclient (>= 2.4)
sxp (1.2.2)
matrix
rdf (~> 3.2)
systemu (2.6.5)
teaspoon (1.2.2)
railties (>= 3.2.5)
teaspoon-mocha (2.3.3)
teaspoon (>= 1.0.0)
temple (0.8.2)
terrapin (0.6.0)
climate_control (>= 0.0.3, < 1.0)
terser (1.1.8)
execjs (>= 0.3.0, < 3)
test-prof (1.0.7)
thor (1.2.2)
tilt (2.0.10)
time (0.2.2)
date
timeout (0.4.0)
tzinfo (2.0.6)
concurrent-ruby (~> 1.0)
ucf (2.0.2)
zip-container (~> 4.0.1)
unaccent (0.4.0)
unf (0.1.4)
unf_ext
unf_ext (0.0.8.2)
unicode-display_width (2.1.0)
unicode-types (1.7.0)
unicorn (6.1.0)
kgio (~> 2.6)
raindrops (~> 0.7)
unicorn-rails (2.2.1)
rack
unicorn
uuid (2.3.9)
macaddr (~> 1.0)
validate_email (0.1.6)
activemodel (>= 3.0)
mail (>= 2.2.5)
validate_url (1.0.15)
activemodel (>= 3.0.0)
public_suffix
vcr (2.9.3)
version_gem (1.1.1)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
web-console (4.2.0)
actionview (>= 6.0.0)
activemodel (>= 6.0.0)
bindex (>= 0.4.0)
railties (>= 6.0.0)
webdrivers (5.0.0)
nokogiri (~> 1.6)
rubyzip (>= 1.3.0)
selenium-webdriver (~> 4.0)
webfinger (1.2.0)
activesupport
httpclient (>= 2.4)
webmock (3.13.0)
addressable (>= 2.3.6)
crack (>= 0.3.2)
hashdiff (>= 0.4.0, < 2.0.0)
webrick (1.7.0)
webrobots (0.1.2)
websocket-driver (0.7.6)
websocket-extensions (>= 0.1.0)
websocket-extensions (0.1.5)
whenever (1.0.0)
chronic (>= 0.6.3)
whenever-test (1.0.1)
whenever
will_paginate (3.3.1)
yaml_db (0.7.0)
rails (>= 3.0)
rake (>= 0.8.7)
yard (0.9.27)
webrick (~> 1.7.0)
zeitwerk (2.6.11)
zip-container (4.0.2)
rubyzip (~> 2.0.0)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (>= 4.3.0)
active_model_serializers (~> 0.10.13)
activerecord-import
activerecord-session_store
acts-as-taggable-on
acts_as_list
acts_as_tree
addressable
api_smith!
attr_encrypted (~> 3.0.0)
auto_strip_attributes
better_errors
bibtex-ruby (~> 5.1.0)
binding_of_caller
bio (~> 1.5.1)
bioportal (>= 3.0)!
bives (~> 2.0)
bootsnap (>= 1.4.4)
bootstrap-sass (>= 3.4.1)
bundler (>= 1.8.4)
caxlsx (>= 4.0)
caxlsx_rails (~> 0.6.2)
cff (~> 0.9.0)
citeproc-ruby (~> 2.0.0)
coffee-rails (~> 4.2)
commonmarker
country_select
csl-styles (~> 2.0.0)
daemons (= 1.1.9)
database_cleaner (~> 1.7.0)
delayed_job_active_record
docsplit!
doi_query_tool!
doorkeeper (>= 5.2.5)
dotenv-rails (~> 2.7.6)
equivalent-xml
exception_notification
factory_bot (~> 6.2.1)
feedjira