plantit.yaml

name: DIRT\3d_beanroot_phenotyping
author: Suxing Liu
image: docker://computationalplantscience/3d_beanroot_pipeline
public: True
commands: /opt/code/bean.sh
doi:

input:
  kind: directory
  path:
  filetypes:
    - ply

   
output:
  path:
  include:
    patterns:
      - xyz
      - ply
      - stl
      - obj
      - gz
      - xlsx
      
params:
  - name: min_dis
    type: number
    default: 35
    step: 1
    min: 1
    max: 100
  - name: n_slices
    type: number
    default: 1000
    step: 1
    min: 500
    max: 1500

env:
  - LC_ALL=C.UTF-8
  - LANG=C.UTF-8

jobqueue:
  walltime: "04:00:00"
  memory: "32GB"
  processes: 1
  cores: 1