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ebi_ontologies.json
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{
"ontologies": [
{
"id": "evora",
"ontology_purl": "https://raw.githubusercontent.com/EVORA-project/evora-ontology/refs/heads/main/models/owl/evora_ontology.owl.ttl"
},
{
"id": "ictv",
"ontology_purl": "https://raw.githubusercontent.com/EVORA-project/ictv-ontology/refs/heads/main/out/ictv_2023.owl.ttl"
},
{
"id": "uniprotrdfs",
"ontology_purl": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/core.owl"
},
{
"id": "emi",
"creator": [
"Tarcisio Mendes de Farias",
"Luca Cappelletti",
"Marco Pagni",
"Arnaud Gaudry",
"Florence Mehl",
"Ana Claudia Sima",
"Pierre-Marie Allard",
"Disha Tandon",
"The Earth Metabolome Initiative Consortium"
],
"is_foundary": false,
"preferredPrefix": "EMI",
"title": "The Earth Metabolome Initiative (EMI) ontology",
"uri": "https://purl.org/emi",
"description": "The Earth Metabolome Initiative (EMI) ontology is designed to capture and structure the metabolic content of all currently known species on our planet.",
"homepage": "https://purl.org/emi/documentation",
"mailing_list": "[email protected]",
"label_property": [
"rdfs:label",
"http://www.w3.org/2004/02/skos/core#altLabel",
"http://www.w3.org/2004/02/skos/core#prefLabel"
],
"definition_property": [
"rdfs:comment",
"http://www.w3.org/2004/02/skos/core#definition"
],
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#closeMatch"
],
"hierarchical_property": [
"rdfs:subClassOf",
"rdfs:subPropertyOf"
],
"hidden_property": "List of properties to that are ignored when rendering the ontology.",
"base_uri": "https://purl.org/emi#",
"reasoner": "Hermit",
"oboSlims": false,
"ontology_purl": "https://raw.githubusercontent.com/digital-botanical-gardens-initiative/earth_metabolome_ontology/refs/heads/main/emi-ols.ttl"
},
{
"id": "hra",
"uri": "https://purl.humanatlas.io/collection/hra",
"homepage": "https://humanatlas.io",
"ontology_purl": "https://cdn.humanatlas.io/digital-objects/collection/hra-ols/latest/graph.ttl",
"title": "Human Reference Atlas (HRA)",
"description": "The Human Reference Atlas (HRA) is a comprehensive, high-resolution, three-dimensional atlas of all the cells in the healthy human body. The Human Reference Atlas provides standard terminologies and data structures for describing specimens, biological structures, and spatial positions linked to existing ontologies.",
"hierarchical_property": [
"http://purl.org/ccf/ccf_part_of"
],
"label_property": [
"http://purl.org/ccf/ccf_pref_label"
],
"mailing_list": "[email protected]"
},
{
"id": "dcat",
"ontology_purl": "https://www.w3.org/ns/dcat.ttl"
},
{
"id": "biolink",
"ontology_purl": "https://w3id.org/biolink/biolink-model.owl.ttl",
"homepage": "https://biolink.github.io/biolink-model/"
},
{
"id": "addicto",
"is_foundary": "true",
"preferredPrefix": "ADDICTO",
"title": "Addiction Ontology",
"uri": "http://addictovocab.org/addicto.owl",
"description": "The Addiction Ontology (AddictO) is an ontology being developed all aspects of addiction research.",
"homepage": "https://addictovocab.org",
"label_property": ["http://www.w3.org/2000/01/rdf-schema#label"],
"definition_property": ["http://purl.obolibrary.org/obo/IAO_0000115"],
"synonym_property": ["http://purl.obolibrary.org/obo/IAO_0000118"],
"hierarchical_property": ["http://purl.obolibrary.org/obo/BFO_0000050"],
"hidden_property": null,
"base_uri": ["http://addictovocab.org/ADDICTO_"],
"oboSlims": "false",
"ontology_purl": "http://addictovocab.org/addicto.owl"
},
{
"id": "dhba",
"creator": [
"David Osumi-Sutherland",
"Huseyin Kir"
],
"preferredPrefix": "DHBA",
"title": "Developing Human Brain Atlas Ontology",
"uri": "https://purl.brain-bican.org/ontology/dhbao",
"description": "An application ontology built by combining ontologised versions of the Allen Institute Developing Human Brain Atlas (DHBA) Structure Graph mapped to Uberon.",
"homepage": "https://purl.brain-bican.org/ontology/dhbao",
"label_property": [
"rdfs:label",
"IAO:0000589",
"http://www.w3.org/2004/02/skos/core#prefLabel"
],
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"https://purl.brain-bican.org/ontology/dhbao/DHBA_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl"
},
{
"id": "hba",
"creator": [
"David Osumi-Sutherland",
"Huseyin Kir"
],
"preferredPrefix": "HBA",
"title": "Human Brain Atlas Ontology",
"uri": "https://purl.brain-bican.org/ontology/hbao",
"description": "An application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) Structure Graph mapped to Uberon.",
"homepage": "https://purl.brain-bican.org/ontology/hbao",
"label_property": [
"rdfs:label",
"IAO:0000589",
"http://www.w3.org/2004/02/skos/core#prefLabel"
],
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"hierarchical_property": [
"http://purl.obolibrary.org/obo/BFO_0000050"
],
"base_uri": [
"https://purl.brain-bican.org/ontology/hbao/HBA_"
],
"reasoner": "OWL2",
"oboSlims": false,
"ontology_purl": "https://purl.brain-bican.org/ontology/hbao/hbao.owl"
},
{
"id": "semapv",
"title": "Semantic Mapping Vocabulary",
"description": "The Semantic Mapping Vocabulary (SEMAPV) captures concepts and relations related to semantic matching, including types of matching (e.g. lexical, manually curated), preprocessing methods and specialised mapping relations.",
"ontology_purl": "https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl",
"homepage": "https://mapping-commons.github.io/semantic-mapping-vocabulary/",
"preferredPrefix": "semapv",
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"base_uri": [
"https://w3id.org/semapv/vocab/"
]
},
{
"id": "slm",
"title": "SwissLipids",
"description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.",
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/swisslipids.ttl",
"preferredPrefix": "SLM",
"base_uri": [
"https://swisslipids.org/rdf/SLM_"
]
},
{
"id": "lipidmaps",
"title": "LIPID MAPS",
"ontology_purl": "https://lipidmaps.org/files/?file=sparql_lipids&ext=ttl",
"preferredPrefix": "LIPIDMAPS",
"homepage": "https://lipidmaps.org",
"base_uri": [
"https://www.lipidmaps.org/rdf/"
]
},
{
"id": "oio",
"ontology_purl": "https://raw.githubusercontent.com/geneontology/go-ontology/master/contrib/oboInOwl",
"base_uri": [
"http://www.geneontology.org/formats/oboInOwl#"
]
},
{
"id": "cao",
"ontology_purl": "https://champ.stuchalk.domains.unf.edu/images/ontology/cao.owl",
"base_uri": [
"http://champ-project.org/images/ontology/cao.owl#CAO_"
],
"homepage": "https://champ.stuchalk.domains.unf.edu/cao",
"mailing_list": "[email protected]",
"title": "The Chemical Analysis Ontology",
"preferredPrefix": "CAO",
"creator": [
"Stuart Chalk"
]
},
{
"id": "rdfs",
"ontology_purl": "https://www.w3.org/2000/01/rdf-schema",
"base_uri": [
"http://www.w3.org/2000/01/rdf-schema#"
]
},
{
"id": "owl",
"ontology_purl": "https://www.w3.org/2002/07/owl",
"base_uri": [
"http://www.w3.org/2002/07/owl#"
]
},
{
"id": "skos",
"ontology_purl": "http://www.w3.org/TR/skos-reference/skos.rdf",
"base_uri": [
"http://www.w3.org/2004/02/skos/core#"
]
},
{
"id": "dcterms",
"ontology_purl": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_terms.rdf",
"base_uri": [
"http://purl.org/dc/terms/"
]
},
{
"id": "dc",
"ontology_purl": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_elements.rdf",
"base_uri": [
"http://purl.org/dc/elements/1.1/"
]
},
{
"id": "schemaorg_http",
"ontology_purl": "https://schema.org/version/latest/schemaorg-all-http.rdf",
"base_uri": [
"http://schema.org/"
]
},
{
"id": "schemaorg_https",
"ontology_purl": "https://schema.org/version/latest/schemaorg-all-https.rdf",
"base_uri": [
"https://schema.org/"
]
},
{
"id": "uberon",
"preferred_root_term": [
"http://purl.obolibrary.org/obo/UBERON_0000104",
"http://purl.obolibrary.org/obo/UBERON_0001062"
]
},
{
"id": "phi",
"preferredPrefix": "PHI",
"title": "PHI-base Ontology",
"description": "Pathogen-Host Interaction database Ontology used by Ensembl",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://purl.obolibrary.org/obo/PHI_"
],
"ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/phi.owl"
},
{
"id": "msio",
"preferredPrefix": "MSIO",
"title": "Metabolomics Standards Initiative Ontology",
"uri": "http://purl.obolibrary.org/obo/msio.owl",
"description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
"homepage": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO",
"mailing_list": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO/issues",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://purl.obolibrary.org/obo/IAO_0000118"
],
"base_uri": [
"http://purl.obolibrary.org/obo/MSIO_"
],
"reasoner": "NONE",
"ontology_purl": "https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl"
},
{
"id": "dicom",
"preferredPrefix": "DICOM",
"title": "DICOM Controlled Terminology",
"uri": "http://dicom.nema.org/resources/ontology/DCM/",
"description": "DICOM Controlled Terminology",
"homepage": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html",
"mailing_list": "[email protected]",
"definition_property": [
"http://www.w3.org/2004/02/skos/core#definition"
],
"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
"synonym_property": [
"http://www.w3.org/2004/02/skos/core#altLabel"
],
"base_uri": [
"http://dicom.nema.org/resources/ontology/DCM/"
],
"reasoner": "none",
"oboSlims": false,
"ontology_purl": "ftp://medical.nema.org/MEDICAL/Dicom/Resources/Ontology/DCM/dcm.owl"
},
{
"id": "sdgio",
"preferredPrefix": "SDGIO",
"title": "Sustainable Development Goals Interface Ontology",
"uri": "http://purl.unep.org/sdg/sdgio.owl",
"description": "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.",
"homepage": "https://github.com/SDG-InterfaceOntology/sdgio",
"mailing_list": "https://github.com/SDG-InterfaceOntology/sdgio/issues",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOWL#hasExactSynonym"
],
"base_uri": [
"http://purl.unep.org/sdg/SDGIO_"
],
"oboSlims": false,
"ontology_purl": "http://purl.unep.org/sdg/sdgio.owl"
},
{
"id": "ensemblglossary",
"preferredPrefix": "ENSGLOSS",
"title": "Ensembl Glossary",
"uri": "http://ensembl.org/glossary",
"description": "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.",
"homepage": "http://ensembl.org/glossary",
"definition_property": [
"http://purl.obolibrary.org/obo/IAO_0000115"
],
"synonym_property": [
"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"
],
"base_uri": [
"http://ensembl.org/glossary/ENSGLOSS_"
],
"reasoner": "NONE",
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{
"id": "efo",
"preferredPrefix": "EFO",
"title": "Experimental Factor Ontology",
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{
"id": "ordo",
"preferredPrefix": "ORDO",
"description": "The Orphanet Rare Disease ontology (ORDO) is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10).",
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{
"id": "teddy",
"preferredPrefix": "TEDDY",
"description": "TEDDY is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems and Synthetic Biology.",
"title": "Terminology for Description of Dynamics",
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"definition_property": [
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{
"id": "edam",
"preferredPrefix": "EDAM",
"title": "Ontology of bioinformatics topics, operations, identifiers, and formats",
"uri": "http://edamontology.org",
"description": "EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use.",
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{
"id": "cco",
"preferredPrefix": "CCO",
"title": "Cell Cycle Ontology",
"uri": "http://purl.obolibrary.org/obo/cco",
"description": "The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects.",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
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"ontology_purl": "http://www.bio.ntnu.no/ontology/CCO/cco.owl"
},
{
"id": "rexo",
"preferredPrefix": "ReXO",
"title": "Regulation of Gene Expression Ontology",
"uri": "http://www.bio.ntnu.no/ontology/ReXO/rexo.owl",
"description": "Regulation of Gene Expression",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
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{
"id": "reto",
"preferredPrefix": "ReTO",
"title": "Regulation of Transcription Ontology",
"uri": "http://www.bio.ntnu.no/ontology/ReTO/reto.owl",
"description": "Regulation of Transcription",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
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{
"id": "gexo",
"preferredPrefix": "GeXO",
"title": "Gene Expression Ontology",
"uri": "http://www.bio.ntnu.no/ontology/GeXO/gexo.owl",
"description": "Gene Expression Ontology",
"homepage": "http://www.semantic-systems-biology.org/apo",
"mailing_list": "[email protected]",
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{
"id": "cmpo",
"preferredPrefix": "CMPO",
"title": "Cellular Microscopy Phenotype Ontology",
"uri": "http://www.ebi.ac.uk/cmpo",
"description": "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.",
"homepage": "http://www.ebi.ac.uk/cmpo",
"mailing_list": "[email protected]",
"definition_property": [
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},
{
"id": "enm",
"preferredPrefix": "ENM",
"title": "eNanoMapper Ontology",
"uri": "http://enanomapper.github.io/ontologies/enanomapper.owl",
"description": "The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. \u003e This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. ",
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"mailing_list": "https://github.com/enanomapper/ontologies",
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{
"id": "atol",
"preferredPrefix": "ATOL",
"title": "Animal Trait Ontology for Livestock",
"uri": "file:/C:/Lea/ontologies/versions%20ATOL/atol_v3.0.obo",
"description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.",
"homepage": "http://www.atol-ontology.com",
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{
"id": "eol",
"preferredPrefix": "EOL",
"title": "Environment Ontology for Livestock",
"uri": "file:/C:/Lea/ontologies/environnement/leo.obo",
"description": "L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage",
"homepage": "http://www.atol-ontology.com",
"mailing_list": "[email protected]",
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{
"id": "lbo",
"preferredPrefix": "LBO",
"title": "Livestock Breed Ontology",
"uri": "http://bioportal.bioontology.org/ontologies/LBO",
"description": "A vocabulary for cattle, chicken, horse, pig, and sheep breeds.",
"homepage": "http://bioportal.bioontology.org/ontologies/LBO",
"mailing_list": "[email protected]",
"definition_property": [
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{
"id": "probonto",
"preferredPrefix": "PROBONTO",
"title": "Probability Distribution Ontology",
"uri": "http://www.probonto.org/ontology",
"description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than eighty uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulas.",
"homepage": "http://probonto.org",
"mailing_list": "[email protected]",
"definition_property": [
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{
"id": "pride",
"preferredPrefix": "PRIDE",
"title": "PRIDE Controlled Vocabulary",
"uri": "http://purl.obolibrary.org/obo/pride_cv.obo",
"description": "The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.",
"homepage": "https://github.com/PRIDE-Utilities/pride-ontology",
"mailing_list": "https://github.com/PRIDE-Utilities/pride-ontology/issues",
"definition_property": [
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{
"id": "bao",
"preferredPrefix": "BAO",
"title": "BioAssay Ontology",
"uri": "http://www.bioassayontology.org/bao/bao_complete.owl",
"description": "The BioAssay Ontology (BAO) describes biological screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO is an extensible, knowledge-based, highly expressive (currently SHOIQ(D)) description of biological assays making use of descriptive logic based features of the Web Ontology Language (OWL). BAO currently has over 700 classes and also makes use of several other ontologies. It describes several concepts related to biological screening, including Perturbagen, Format, Meta Target, Design, Detection Technology, and Endpoint. Perturbagens are perturbing agents that are screened in an assay; they are mostly small molecules. Assay Meta Target describes what is known about the biological system and / or its components interrogated in the assay (and influenced by the Perturbagen). Meta target can be directly described as a molecular entity (e.g. a purified protein or a protein complex), or indirectly by a biological process or event (e.g. phosphorylation). Format describes the biological or chemical features common to each test condition in the assay and includes biochemical, cell-based, organism-based, and variations thereof. The assay Design describes the assay methodology and implementation of how the perturbation of the biological system is translated into a detectable signal. Detection Technology relates to the physical method and technical details to detect and record a signal. Endpoints are the final HTS results as they are usually published (such as IC50, percent inhibition, etc). BAO has been designed to accommodate multiplexed assays. All main BAO components include multiple levels of sub-categories and specification classes, which are linked via object property relationships forming an expressive knowledge-based representation.",
"homepage": "http://bioassayontology.org",
"mailing_list": "http://bioassayontology.org/wp/contact-us/",
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},
{
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"preferredPrefix": "SIO",
"title": "Semanticscience Integrated Ontology",
"uri": "http://semanticscience.org/ontology/sio.owl",
"description": "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.",
"homepage": "https://github.com/micheldumontier/semanticscience",
"mailing_list": "[email protected]",
"definition_property": [
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},
{
"id": "unimod",
"preferredPrefix": "UNIMOD",
"title": "Unimod protein modification database for mass spectrometry",
"uri": "http://www.unimod.org/obo/unimod.obo",
"description": "Unimod is a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, an d site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).",
"homepage": "http://www.unimod.org/",
"mailing_list": "[email protected]",
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"oboSlims": false,
"reasoner": "NONE",
"ontology_purl": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/unimod.owl"
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{
"id": "nmrCV",
"preferredPrefix": "NMR",
"title": "nuclear magnetic resonance CV",
"uri": "http://nmrML.org/nmrCV",
"description": "This artefact is an MSI-approved controlled vocabulary primarily developed under COSMOS EU and PhenoMeNal EU governance. The nmrCV is supporting the nmrML XML format with standardized terms. nmrML is a vendor agnostic open access NMR raw data standard. Its primaly role is analogous to the mzCV for the PSI-approved mzML XML format. It uses BFO2.0 as its Top level. This CV was derived from two predecessors (The NMR CV from the David Wishart Group, developed by Joseph Cruz) and the MSI nmr CV developed by Daniel Schober at the EBI. This simple taxonomy of terms (no DL semantics used) serves the nuclear magnetic resonance markup language (nmrML) with meaningful descriptors to amend the nmrML xml file with CV terms. Metabolomics scientists are encouraged to use this CV to annotrate their raw and experimental context data, i.e. within nmrML. The approach to have an exchange syntax mixed of an xsd and CV stems from the PSI mzML effort. The reason to branch out from an xsd into a CV is, that in areas where the terminology is likely to change faster than the nmrML xsd could be updated and aligned, an externally and decentrallised maintained CV can accompensate for such dynamics in a more flexible way. A second reason for this set-up is that semantic validity of CV terms used in an nmrML XML instance (allowed CV terms, position/relation to each other, cardinality) can be validated by rule-based proprietary validators: By means of cardinality specifications and XPath expressions defined in an XML mapping file (an instances of the CvMappingRules.xsd ), one can define what ontology terms are allowed in a specific location of the data model.",
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"ontology_purl": "http://nmrml.org/cv/stable/nmrCV.owl"
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{
"id": "sbo",
"title": "Systems Biology Ontology",
"definition_property": [
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{
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{
"id": "afo",
"preferredPrefix": "AFO",
"title": "Allotrope Merged Ontology Suite",
"description": "Allotrope Merged Ontology Suite",
"uri": "http://purl.allotrope.org/voc/afo/merged/REC/2018/11",
"base_uri": [
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"label_property": "http://www.w3.org/2004/02/skos/core#prefLabel",
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"ontology_purl": "http://purl.allotrope.org/voc/afo/latest.xml"
},
{
"id": "hpath",
"preferredPrefix": "MC",
"title": "Histopathology Ontology",
"uri": "https://github.com/Novartis/hpath",
"description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.",
"homepage": "https://github.com/Novartis/hpath",
"mailing_list": "https://github.com/Novartis/hpath",
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"reasoner": "None",
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{
"id": "srao",
"preferredPrefix": "SRAO",
"title": "FAIRsharing Subject Ontology (SRAO)",
"uri": "http://www.fairsharing.org/ontology/subject/SRAO.owl",
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