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publications.html
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---
layout: default
title: Publications
permalink: /publications/
---
<script type='text/javascript' src='https://d1bxh8uas1mnw7.cloudfront.net/assets/embed.js'></script>
<section id="tools" class="wrapper">
<div class="inner">
<h2>Peer-Reviewed Publications</h2>
<p>Our <a href="https://www.ncbi.nlm.nih.gov/pubmed?term=(sansone%20sa%5BAuthor%5D)%20OR%20rocca-serra%20p%5BAuthor%5D" target="_blank">
full list of publications</a>.</p>
<p>Prof. Sansone's <a href="https://scholar.google.com/citations?user=gfJ8wsIAAAAJ&hl=en" target="_blank"> Google Scholar profile</a>.</p>
<h3>Selected past and recent publications</h3>
<ol>
<li>
Maxwell L, Shreedhar P, Dauga D, et al. FAIR, ethical, and coordinated data sharing for COVID-19 response: a scoping review and cross-sectional survey of COVID-19 data sharing platforms and registries.
Lancet Digital Health. 2023 Oct;5(10):e712-e736.
<a href="https://doi.org/10.1016/s2589-7500(23)00129-2" target="_blank">doi:10.1016/s2589-7500(23)00129-2</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1016/s2589-7500(23)00129-2"></div>
</li>
<li>
Rocca-Serra P, Gu W, Ioannidis V, et al. The FAIR Cookbook - the essential resource for and by FAIR doers.
Scientific Data. 2023 May 19;10(1):292.
<a href="https://doi.org/10.1038/s41597-023-02166-3" target="_blank">doi:10.1038/s41597-023-02166-3</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41597-023-02166-3"></div>
</li>
<li>
Welter D, Rocca-Serra P, Grouès V, et al. The Translational Data Catalog - discoverable biomedical datasets.
Scientific Data. 2023 Jul 20;10(1):470.
<a href="https://doi.org/10.1038/s41597-023-02258-0" target="_blank">doi:10.1038/s41597-023-02258-0</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41597-023-02258-0"></div>
</li>
<li>
Welter D, Juty N, Rocca-Serra P, et al. FAIR in action - a flexible framework to guide FAIRification.
Scientific Data. 2023 May 19;10(1):291.
<a href="https://doi.org/10.1038/s41597-023-02167-2" target="_blank">doi:10.1038/s41597-023-02167-2</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41597-023-02167-2"></div>
</li>
<li>
Batista D, Gonzalez-Beltran A, Sansone SA, Rocca-Serra P. Machine actionable metadata models.
Scientific Data. 2022 Sep 30;9(1):592.
<a href="https://doi.org/10.1038/s41597-022-01707-6" target="_blank">doi:10.1038/s41597-022-01707-6</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41597-022-01707-6"></div>
</li>
<li>
Mirzayi C, Renson A; Genomic Standards Consortium; Massive Analysis and Quality Control Society, et al. Reporting guidelines for human microbiome research: the STORMS checklist.
Nature Medicine. 2021 Nov;27(11):1885-1892.
<a href="https://doi.org/10.1038/s41591-021-01552-x" target="_blank">doi:10.1038/s41591-021-01552-x</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41591-021-01552-x"></div>
</li>
Lee G, Bacon S, Bush I, et al. Barely sufficient practices in scientific computing.
Patterns. 2021 Feb 12;2(2):100206.
<a href="https://doi.org/10.1016/j.patter.2021.100206" target="_blank">doi:10.1016/j.patter.2021.100206</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1016/j.patter.2021.100206"></div>
</li>
<li>
Rocca-Serra P, Sansone SA. Experiment design driven FAIRification of omics data matrices, an exemplar.
Sci Data. 2019 Dec 12;6(1):271.
<a href="https://doi.org/10.1038/s41597-019-0286-0" target="_blank">doi:10.1038/s41597-019-0286-0</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41597-019-0286-0"></div>
</li>
<li>
Viant MR, Ebbels TMD, Beger RD, et al. Use cases, best practice and reporting standards for metabolomics
in regulatory toxicology. Nature Communications 10, 3041 (2019).
<a href="https://doi.org/10.1038/s41467-019-10900-y" target="_blank">doi:10.1038/s41467-019-10900-y</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41467-019-10900-y"></div>
</li>
<li>
Amann RI, Baichoo S, Blencowe BJ, et al. Toward unrestricted use of public genomic data. Science 2019
Jan 25;363(6425):350-352.
<a href="http://doi.org/10.1126/science.aaw1280" target="_blank">doi:10.1126/science.aaw1280</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1126/science.aaw1280"></div>
</li>
<li>
Sansone SA, McQuilton P, Rocca-Serra P, et al. FAIRsharing, a cohesive community approach to the
growth in standards, repositories and policies. Nat Biotech. 2019 April 37;358-367.
<a href="http://doi.org/10.1038/s41587-019-0080-8" target="_blank">doi:10.1038/s41587-019-0080-8</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/s41587-019-0080-8"></div>
</li>
<li>
Wilkinson MD, Dumontier M, Sansone SA, et al. Evaluating FAIR maturity through a scalable, automated,
community-governed framework. Sci Data. 2019 Sep 20;6(1):174.
<a href="https://doi.org/10.1038/s41597-019-0184-5" target="_blank">doi:10.1038/s41597-019-0184-5</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="doi:10.1038/s41597-019-0184-5"></div>
</li>
<li>
Wilkinson MD, Sansone SA, Schultes E, et al. A design framework and exemplar metrics for FAIRness.
Sci Data 2018 Jun 26;5.
<a href="http://doi.org/10.1038/sdata.2018.118" target="_blank">doi:10.1038/sdata.2018.118</a>
<div class='altmetric-embed' data-badge-type='4' data-doi="doi:10.1038/sdata.2018.118"></div>
</li>
<li>
Ohno-Machado L, Sansone SA, Alter G, et al. DataMed: Finding useful data across multiple biomedical
data repositories. Nat Genet. 2017 May 26;49(6):816-819.
<a href="http://doi.org/10.1038/ng.3864" target="_blank">doi:10.1038/ng.3864</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/ng.3864"></div>
</li>
<li>
Wilkinson MD, Dumontier M, Aalbersberg IJ, et al. The FAIR Guiding Principles for scientific data
management and stewardship. Sci Data 2016 Mar 15;3.
<a href="http://doi.org/10.1038/sdata.2016.18" target="_blank">doi:10.1038/sdata.2016.18</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/sdata.2016.18"></div>
</li>
<li>
Baker NA, Klemm JD, Harper SL, et al. Standardizing data. Nat Nanotechnol. 2013 Feb;8(2).
<a href="http://doi.org/10.1038/nnano.2013.12" target="_blank">doi:10.1038/nnano.2013.12</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/nnano.2013.12"></div>
</li>
<li>
Sansone SA*, Rocca-Serra P*, Field D, et al. Toward interoperable bioscience data. Nat Genet. 2012 Jan 27;44(2).
<a href="http://doi.org/10.1038/ng.1054" target="_blank">doi:10.1038/ng.1054</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/ng.1054"></div>
</li>
<li>
Field D*, Sansone SA*, Collis A*, et al. Megascience. 'Omics data sharing. Science. 2009 Oct 9;326(5950).
<a href="http://doi.org/10.1126/science.1180598" target="_blank">doi:10.1126/science.1180598</a>.
The * indicates co-first authors.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1126/science.1180598"></div>
</li>
<li>
Taylor CF*, Field D*, Sansone SA*, et al. Promoting coherent minimum reporting guidelines for biological
and biomedical investigations: the MIBBI project. Nat Biotechnol. 2008 Aug;26(8).
<a href="http://doi.org/10.1038/nbt.1411" target="_blank">doi:10.1038/nbt.1411</a>.
The * indicates co-first and corresponding authors.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/nbt.1411"></div>
</li>
<li>
Smith B, Ashburner M, Rosse C, et al. The OBO Foundry: coordinated evolution of ontologies to support
biomedical data integration. Nat Biotechnol. 2007 Nov;25(11).
<a href="http://doi.org/10.1038/nbt1346" target="_blank">doi:10.1038/nbt1346</a>.
<div class='altmetric-embed' data-badge-type='4' data-doi="10.1038/nbt1346"></div>
</li>
</ol>
<h3>Invited expert reports, impacting on funders’ data policy</h3>
<ul>
<li>
Sansone SA and Rocca-Serra P. Interoperability Standards - Digital Objects in Their Own Right. 2016.
<a href="https://dx.doi.org/10.6084/m9.figshare.4055496.v1" target="_blank">
doi:10.6084/m9.figshare.4055496.v1</a>.
Lead author: Invited think piece to inform the <b>Wellcome Trust</b>
on the status quo and to advise them on actions needed to support open research and reproducibility.
</li>
<li>
Sansone SA, Kerr LK, Kennedy ND, Huerta MF. The NIH Big Data to Knowledge Initiative: Making Data
Broadly Usable. 2013.
<a href="https://dx.doi.org/10.6084/m9.figshare.3795816.v2" target="_blank">
doi:10.6084/m9.figshare.3795816.v2</a>.
Lead author: report from the co-chairs of the USA NIH BD2K workshop organized to understand
community-based standards life cycle and how best the agency can support these initiatives.
</li>
</ul>
</div>
</section>