diff --git a/README.md b/README.md index 7955e1a4eb..5b85e74c09 100644 --- a/README.md +++ b/README.md @@ -14,13 +14,13 @@ The current standards can be browsed at https://genomicsstandardsconsortium.gith To support existing implementers who have been using previous Excel-based versions of MIxS, we have provided a manually created [Excel workbook](mixs/excel) with the same format as MIxS 5. However, we highly recommend using one of the machine-readable artifacts available in the [mixs](mixs) folder. -MIxS is divided into checklists and packages. +MIxS is divided into checklists and extensions (previously known as environmental packages). **[Checklists](https://genomicsstandardsconsortium.github.io/mixs/#checklists)** include the required, recommended, and optional metadata fields for a specific type of sequence: genome, metagenome, marker gene, or xxx. For genomic sequences (MIGS), there are specific checklists for different taxa groups (Eukaryotes, Bacteria, Viruses, and Plants as hosts). -**[Packages](https://genomicsstandardsconsortium.github.io/mixs/#packages)** supplement checklists by providing additional terms to describe specific environments from which a sample was collected. For example, the Agriculture package has a number of terms to record attributes specific to agricultural environments. +**[Extensions](https://genomicsstandardsconsortium.github.io/mixs/#packages)** supplement checklists by providing additional terms to describe specific environments from which a sample was collected. For example, the Agriculture extension has a number of terms to record attributes specific to agricultural environments. -Packages can be used in conjunction with any checklist, so, for example, if you generate metagenomic sequences from an agricultural environment, you would use MIMS + the Agriculture package. All possible [combinations](https://genomicsstandardsconsortium.github.io/mixs/#combinations) of checklists and packages are available on the web browser. +Extensions can be used in conjunction with any checklist, so, for example, if you generate metagenomic sequences from an agricultural environment, you would use MIMS + the Agriculture extension. All possible [combinations](https://genomicsstandardsconsortium.github.io/mixs/#combinations) of checklists with extensions are available on the web browser. **To request changes to the MIxS standards, please use the [issue tracker](https://github.com/GenomicsStandardsConsortium/mixs/issues) in this repo.**