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get_plot_data.sh.old
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#!/bin/bash
# I sort of pieced this together from two existing scripts, should probably
# clean it up eventually.
if [ ! -z $1 ]
then
: # $1 was given
current_date=$1
else
: # $1 was not given
current_date=`date +%Y%m%d`
fi
echo "Parsing ... " ${current_date}
MYDATE=${current_date}
SCANFILE=/home/lattice/scan_lists/${current_date}/scan_list_${current_date}
LATTICE_DATA_FOLDER=/home/lattice/data/
LOCAL_DATA_FOLDER=/home/lattice/data/
LOCAL_PYPLOT_FOLDER=/home/lattice/.webplots_pyplot
LOCAL_GNU_FOLDER=/home/lattice/.webplots_gnu
mkdir $LOCAL_PYPLOT_FOLDER/$MYDATE
mkdir $LOCAL_GNU_FOLDER/$MYDATE
plot_list=()
time_list=()
hlp_last_scan="-1"
cd $LOCAL_PYPLOT_FOLDER
while read line; do
# loop over file omitting white lines
if [ ! -z "$line" ]; then
# replace the lattice folder with the local data folder
result_string="${line//${LATTICE_DATA_FOLDER}/$LOCAL_DATA_FOLDER}"
substring="Excitation729"
if [[ "$line" == *"$substring"* ]]; then
continue
fi
# cut the first column
mypath=`echo $result_string | cut -c 9-`
mytime=`echo $result_string | cut -c 1-7`
# check if file was already plotted
# i.e. check if out<mytime>.png exists already
if [ -f ${MYDATE}/out${mytime}.info ]; then
continue
fi
# reset the internal file separator to be able to read filenames with spaces in them
OLDIFS=$IFS
IFS=$'\n'
# find csv file and plot it
myfile_arr=($(find ${mypath}/*.csv))
for i in "${myfile_arr[@]}"
do
# check if filename has Readout or Histogram in it
if [[ "$i" == *"Readout"* ]]; then
continue
else
if [[ "$i" == *"Histogram"* ]]; then
continue
fi
fi
SCAN_INFO=`echo $i | cut -c 29-`
# cut the scan info in parts with / as delimiter
arr=($(echo $SCAN_INFO | tr "/" "\n"))
# cut the .dir
mytitle=`echo "${arr[1]::-4}"``echo " - ${arr[2]::-4}"``echo " - ${arr[3]::-4}"`
# get the column numbers with the separator ,
no_of_columns=`awk -F, 'NR==1{print NF}' "${i}"`
# check if file exists in case time tags are double
if [ ! -f "${MYDATE}/out${mytime}.info" ]; then
outfile="out"$mytime".png"
hlp_last_scan="${MYDATE}/$outfile"
# write info in separate file
echo $mytitle > "${MYDATE}/out${mytime}.info"
echo $i >> "${MYDATE}/out${mytime}.info"
echo $mytitle > "$LOCAL_GNU_FOLDER/${MYDATE}/out${mytime}.info"
echo $i >> "$LOCAL_GNU_FOLDER/${MYDATE}/out${mytime}.info"
# add the plot we just made to the list
time_list+=(${MYDATE}/${mytime})
plot_list+=(${outfile})
#generate plots for the lablog
myfile="\""${i}"\""
no_of_columns="'"$no_of_columns"'"
outfile="'"$LOCAL_GNU_FOLDER/${MYDATE}/$outfile"'"
mytitle="'"$mytitle"'"
gnuplot -e "filename=${myfile}" -e "N=${no_of_columns}" -e "mytitle=${mytitle}" -e "outfile=${outfile}" $LOCAL_GNU_FOLDER/plotter.plg
else
outfile="out"$mytime"_1.png"
hlp_last_scan="${MYDATE}/$outfile"
# write info in separate file
echo $mytitle > "${MYDATE}/out${mytime}_1.info"
echo $i >> "${MYDATE}/out${mytime}_1.info"
echo $mytitle > "$LOCAL_GNU_FOLDER/${MYDATE}/out${mytime}_1.info"
echo $i >> "$LOCAL_GNU_FOLDER/${MYDATE}/out${mytime}_1.info"
# add the plot we just made to the list
time_list+=(${MYDATE}/${mytime}_1)
plot_list+=(${outfile})
#generate plots for the lablog
myfile="\""${i}"\""
no_of_columns="'"$no_of_columns"'"
outfile="'"$LOCAL_GNU_FOLDER/${MYDATE}/$outfile"'"
mytitle="'"$mytitle"'"
gnuplot -e "filename=${myfile}" -e "N=${no_of_columns}" -e "mytitle=${mytitle}" -e "outfile=${outfile}" $LOCAL_GNU_FOLDER/plotter.plg
fi
done
IFS=$OLDIFS
fi
done <$SCANFILE
# make index.html file
# find all html files of the form 20160415.html
folder_arr=($(find . -maxdepth 1 -type d -printf '%P\n' | sort --reverse))
HTMLFILE=index.html
# Might as well not rewrite the file if it already exists
if [ ! -f $HTMLFILE ]
then
echo "<html>
<link rel="stylesheet" type="text/css" href="mytheme.css">
<body>
<h1>Lattice Data</h1>
<br><hr><br>
</body></html>
" > $HTMLFILE
fi
for ((i=${#folder_arr[@]}-1 ; i>=0 ; i--));
do
# Might as well just add the dates which are new since last update
mylink_name=`echo ${folder_arr[i]}`
if grep -xq "<h2><a href='${folder_arr[i]}'>${mylink_name}</a></h2>" $HTMLFILE
then
#echo "${mylink_name} already written"
continue
else
sed -i -e "\@<br><hr><br>@a\<h2><a href='${folder_arr[i]}'>${mylink_name}</a></h2>" $HTMLFILE
fi
done
# Now for the lablog plots
cd $LOCAL_GNU_FOLDER
pngfile_arr=($(find ${MYDATE}/*.png | sort -r))
HTMLFILE=${MYDATE}.html
echo "<html>
<body>" > $HTMLFILE
for ((i=0;i<${#pngfile_arr[@]};++i));
do
time_str=`echo ${pngfile_arr[i]} | cut -c 13- | cut -c -7`
infofile="${MYDATE}/out${time_str}.info"
info_file_content=`cat $infofile`
echo "<b>${info_file_content}</b><br><img src="${pngfile_arr[i]}"><br><br><hr><br>" >> $HTMLFILE
done
echo "</body>
</html>
" >> $HTMLFILE