From 12c53bb456e4625d169c942d45819ccde564f22a Mon Sep 17 00:00:00 2001 From: Alex Tate <0xalextate@gmail.com> Date: Thu, 1 Jun 2023 23:25:38 -0700 Subject: [PATCH 1/2] Version bump to 1.5.0 and Python 3.10 in setup.py --- setup.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/setup.py b/setup.py index 78cdbabe..cf0c5f31 100644 --- a/setup.py +++ b/setup.py @@ -14,8 +14,8 @@ EMAIL = 'ajtate@colostate.edu' AUTHOR = 'Kristen Brown, Alex Tate' PLATFORM = 'Unix' -REQUIRES_PYTHON = '>=3.9.0' -VERSION = '1.4.0' +REQUIRES_PYTHON = '>=3.10.0' +VERSION = '1.5.0' REQUIRED = [] # Required packages are installed via Conda's environment.yml From 1644b20759914b2f383d82f7c0fc3fc1c8dc0b48 Mon Sep 17 00:00:00 2001 From: Alex Tate <0xalextate@gmail.com> Date: Thu, 1 Jun 2023 23:41:28 -0700 Subject: [PATCH 2/2] Adding citation for recently published manuscript --- README.md | 3 +++ setup.py | 4 ++-- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 94669a78..de591281 100644 --- a/README.md +++ b/README.md @@ -310,6 +310,9 @@ Cleanup commands will be added to tinyRNA in a future release, but for now the f rm {fastp/*.fastq,{tiny-collapse,bowtie}/*.fa,bowtie/*.sam} ``` +## Citation +Tate, A. J., Brown, K. C., & Montgomery, T. A. (2023). tiny-count: A counting tool for hierarchical classification and quantification of small RNA-seq reads with single-nucleotide precision. _Bioinformatics Advances_. https://doi.org/10.1093/bioadv/vbad065 + ## Contributing diff --git a/setup.py b/setup.py index cf0c5f31..6ec2684a 100644 --- a/setup.py +++ b/setup.py @@ -11,8 +11,8 @@ NAME = 'tinyrna' DESCRIPTION = 'Precision analysis of small RNA high-throughput sequencing data' URL = 'https://github.com/MontgomeryLab/tinyrna/' -EMAIL = 'ajtate@colostate.edu' -AUTHOR = 'Kristen Brown, Alex Tate' +EMAIL = 'tai.montgomery@colostate.edu' +AUTHOR = 'Alex Tate, Kristen Brown' PLATFORM = 'Unix' REQUIRES_PYTHON = '>=3.10.0' VERSION = '1.5.0'