From 12c53bb456e4625d169c942d45819ccde564f22a Mon Sep 17 00:00:00 2001
From: Alex Tate <0xalextate@gmail.com>
Date: Thu, 1 Jun 2023 23:25:38 -0700
Subject: [PATCH 1/2] Version bump to 1.5.0 and Python 3.10 in setup.py

---
 setup.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/setup.py b/setup.py
index 78cdbabe..cf0c5f31 100644
--- a/setup.py
+++ b/setup.py
@@ -14,8 +14,8 @@
 EMAIL = 'ajtate@colostate.edu'
 AUTHOR = 'Kristen Brown, Alex Tate'
 PLATFORM = 'Unix'
-REQUIRES_PYTHON = '>=3.9.0'
-VERSION = '1.4.0'
+REQUIRES_PYTHON = '>=3.10.0'
+VERSION = '1.5.0'
 REQUIRED = []  # Required packages are installed via Conda's environment.yml
 
 

From 1644b20759914b2f383d82f7c0fc3fc1c8dc0b48 Mon Sep 17 00:00:00 2001
From: Alex Tate <0xalextate@gmail.com>
Date: Thu, 1 Jun 2023 23:41:28 -0700
Subject: [PATCH 2/2] Adding citation for recently published manuscript

---
 README.md | 3 +++
 setup.py  | 4 ++--
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 94669a78..de591281 100644
--- a/README.md
+++ b/README.md
@@ -310,6 +310,9 @@ Cleanup commands will be added to tinyRNA in a future release, but for now the f
 rm {fastp/*.fastq,{tiny-collapse,bowtie}/*.fa,bowtie/*.sam}
 ```
 
+## Citation
+Tate, A. J., Brown, K. C., & Montgomery, T. A. (2023). tiny-count: A counting tool for hierarchical classification and quantification of small RNA-seq reads with single-nucleotide precision. _Bioinformatics Advances_. https://doi.org/10.1093/bioadv/vbad065
+
 
 ## Contributing
 
diff --git a/setup.py b/setup.py
index cf0c5f31..6ec2684a 100644
--- a/setup.py
+++ b/setup.py
@@ -11,8 +11,8 @@
 NAME = 'tinyrna'
 DESCRIPTION = 'Precision analysis of small RNA high-throughput sequencing data'
 URL = 'https://github.com/MontgomeryLab/tinyrna/'
-EMAIL = 'ajtate@colostate.edu'
-AUTHOR = 'Kristen Brown, Alex Tate'
+EMAIL = 'tai.montgomery@colostate.edu'
+AUTHOR = 'Alex Tate, Kristen Brown'
 PLATFORM = 'Unix'
 REQUIRES_PYTHON = '>=3.10.0'
 VERSION = '1.5.0'