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registry api does not return bundle of a product #133

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tloubrieu-jpl opened this issue May 10, 2022 · 7 comments
Closed

registry api does not return bundle of a product #133

tloubrieu-jpl opened this issue May 10, 2022 · 7 comments
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bug Something isn't working invalid This doesn't seem right s.high High severity

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@tloubrieu-jpl
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🐛 Describe the bug

When I want to get the bundle embedding a product I am not getting a result.

📜 To Reproduce

Test with the following request on the test dataset:

curl --location --request GET 'http://localhost:8080/products/urn:nasa:pds:insight_rad:data_derived:hp3_rad_der_00014_20181211_073042::1.0/bundles'
--header 'Accept: application/json'

Returns:
{
"summary": {
"q": "",
"hits": 0,
"took": 125,
"start": 0,
"limit": 100,
"sort": [],
"properties": []
},
"data": []
}

🕵️ Expected behavior

The data property should be filled with the description of the bundle embedding the product.

📚 Version of Software Used

The bug was found using the docker compose deployment on registry repository main branch using this docker image https://hub.docker.com/layers/registry-api-service/nasapds/registry-api-service/latest/images/sha256-b98500e7ed14a6eeee70e26bcd9a27c079e1d8ec4bda04ae56246a09f9b02ac2?context=explore

🩺 Test Data / Additional context

🏞Screenshots

🖥 System Info

  • OS: [e.g. iOS]
  • Browser [e.g. chrome, safari]
  • Version [e.g. 22]

🦄 Related requirements

⚙️ Engineering Details

@tloubrieu-jpl tloubrieu-jpl added bug Something isn't working needs:triage s.high High severity labels May 10, 2022
@al-niessner
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@tloubrieu-jpl

works for me with latest code:

$ curl --location --silent --request GET 'http://localhost:8080/products/urn:nasa:pds:insight_rad:data_raw:hp3_rad_raw_00478_20200401_121608::1.0/bundles?fields=lidvid' --header 'Accept: application/kvp+json'
{
  "summary":{"q":"","hits":1,"took":124,"start":0,"limit":100,"sort":[],"properties":["lidvid"]},
  "data":[    {
      "lidvid":"urn:nasa:pds:insight_rad::2.1"    }
  ]
}

@tloubrieu-jpl
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@al-niessner this ticket, as all high level tickets need to be applied to the branch release/1.0.1 because this is the one in production. If this stays in the PR #142 I will not be able to merge it.

@al-niessner
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@tloubrieu-jpl

The fix in PR #142 does not help release 1.0.1 at all. The fix will have to be worked there in a different way due to all of the rewrites on PR #142. Not a surprise at all but it means this ticket will have to be referenced by 2 separate PRs for it to be fixed on all branches. Unlike the query stuff, the fix for this issue does not lend itself to cross branch easiness. Will develop the correct fix on branch release 1.0.1 for this ticket and that code base.

@al-niessner
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@tloubrieu-jpl

Cannot duplicate using release 1.0.1 code:

$ git checkout -t remotes/origin/release/1.0.1
Branch 'release/1.0.1' set up to track remote branch 'release/1.0.1' from 'origin'.
Switched to a new branch 'release/1.0.1'
$ git checkout -b issue_131.r101
Switched to a new branch 'issue_131.r101'
$ git status
On branch issue_131.r101
nothing to commit, working tree clean
$ ver=wip ; docker build --build-arg version=${ver} --file service/docker/Dockerfile.local --tag registry:${ver} . && docker_scrub.sh
<...snip all the unnecessary details...>
INFO] Installing /usr/local/registry-wip/pom.xml to /root/.m2/repository/gov/nasa/pds/registry-api/1.0.1/registry-api-1.0.1.pom
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] gov.nasa.pds:registry-api-model 1.0.1 .............. SUCCESS [02:54 min]
[INFO] PDS API Search Query Lexer 1.1.1 ................... SUCCESS [01:24 min]
[INFO] gov.nasa.pds.api.registry-service 1.0.1 ............ SUCCESS [03:26 min]
[INFO] gov.nasa.pds:registry 1.0.1 ........................ SUCCESS [  0.777 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  08:36 min
[INFO] Finished at: 2022-06-10T18:55:18Z
[INFO] ------------------------------------------------------------------------
$ ver=wip ; docker run --name registry --network pds  --publish 8080:8080 --rm --volume /home/niessner/Projects/PDS/registry-api/service/src/main/resources/application.properties.all:/usr/local/registry-${ver}/service/target/classes/application.properties    registry:${ver}
<...snip...>

Then here is the curl you present:

$ curl --location --request GET 'http://localhost:8080/products/urn:nasa:pds:insight_rad:data_derived:hp3_rad_der_00014_20181211_073042::1.0/bundles' --header 'Accept: application/json'
{"summary":{"q":"","hits":1,"took":15,"start":0,"limit":100,"sort":[],"properties":["_package_id","description","lid","lidvid","ops:Data_File_Info.ops:creation_date_time","ops:Data_File_Info.ops:file_name","ops:Data_File_Info.ops:file_ref","ops:Data_File_Info.ops:file_size","ops:Data_File_Info.ops:md5_checksum","ops:Data_File_Info.ops:mime_type","ops:Harvest_Info.ops:harvest_date_time","ops:Harvest_Info.ops:node_name","ops:Label_File_Info.ops:creation_date_time","ops:Label_File_Info.ops:file_name","ops:Label_File_Info.ops:file_ref","ops:Label_File_Info.ops:file_size","ops:Label_File_Info.ops:md5_checksum","ops:Tracking_Meta.ops:archive_status","pds:Bundle.pds:bundle_type","pds:Bundle_Member_Entry.pds:lid_reference","pds:Bundle_Member_Entry.pds:member_status","pds:Bundle_Member_Entry.pds:reference_type","pds:Citation_Information.pds:author_list","pds:Citation_Information.pds:description","pds:Citation_Information.pds:doi","pds:Citation_Information.pds:publication_year","pds:File.pds:comment","pds:File.pds:file_name","pds:Identification_Area.pds:information_model_version","pds:Identification_Area.pds:logical_identifier","pds:Identification_Area.pds:product_class","pds:Identification_Area.pds:title","pds:Identification_Area.pds:version_id","pds:Internal_Reference.pds:lid_reference","pds:Internal_Reference.pds:reference_type","pds:Investigation_Area.pds:name","pds:Investigation_Area.pds:type","pds:Modification_Detail.pds:description","pds:Modification_Detail.pds:modification_date","pds:Modification_Detail.pds:version_id","pds:Observing_System.pds:name","pds:Observing_System_Component.pds:name","pds:Observing_System_Component.pds:type","pds:Primary_Result_Summary.pds:processing_level","pds:Primary_Result_Summary.pds:purpose","pds:Science_Facets.pds:discipline_name","pds:Science_Facets.pds:domain","pds:Stream_Text.pds:local_identifier","pds:Stream_Text.pds:name","pds:Stream_Text.pds:offset","pds:Stream_Text.pds:parsing_standard_id","pds:Stream_Text.pds:record_delimiter","pds:Target_Identification.pds:name","pds:Target_Identification.pds:type","pds:Time_Coordinates.pds:start_date_time","pds:Time_Coordinates.pds:stop_date_time","product_class","ref_lid_collection","ref_lid_collection_secondary","ref_lid_instrument","ref_lid_instrument_host","ref_lid_investigation","ref_lid_target","title","vid"]},"data":[{"id":"urn:nasa:pds:insight_rad::2.1","type":"Product_Bundle","title":"Mars InSight Lander Radiometer Data Archive","start_date_time":"2018-05-05T00:00:00Z","stop_date_time":"3000-01-01T00:00:00.000Z","investigations":[{"id":"urn:nasa:pds:context:investigation:mission.insight","href":"http://localhost:8080/products/urn:nasa:pds:context:investigation:mission.insight"}],"observing_system_components":[{"id":"urn:nasa:pds:context:instrument_host:spacecraft.insight","href":"http://localhost:8080/products/urn:nasa:pds:context:instrument_host:spacecraft.insight"},{"id":"urn:nasa:pds:context:instrument:radiometer.insight","href":"http://localhost:8080/products/urn:nasa:pds:context:instrument:radiometer.insight"}],"targets":[{"id":"urn:nasa:pds:context:target:planet.mars","href":"http://localhost:8080/products/urn:nasa:pds:context:target:planet.mars"}],"metadata":{"label_url":"/data/bundle_insight_rad.xml","update_date_time":"2018-02-01T00:00:00Z","version":"2.1"},"properties":{"pds:Stream_Text.pds:name":["Introduction to the Radiometer Data Bundle"],"pds:Modification_Detail.pds:description":["Pre-peer review version","First release","The collections urn:nasa:pds:insight_rad:data_calibrated and urn:nasa:pds:insight_rad:data_derived were added to this bundle with InSight Release 1b.","Changed Observing_System_Component name in this label from RAD to RADIOMETER to match context product name. Expanded Citation_Information description."],"lid":["urn:nasa:pds:insight_rad"],"pds:Modification_Detail.pds:modification_date":["2018-02-01T00:00:00Z","2019-04-22T00:00:00Z","2019-06-11T00:00:00Z","2020-01-02T00:00:00Z"],"pds:Bundle_Member_Entry.pds:member_status":["Primary","Primary","Primary","Secondary"],"ref_lid_instrument":["urn:nasa:pds:context:instrument:radiometer.insight"],"ops:Tracking_Meta.ops:archive_status":["staged"],"ops:Label_File_Info.ops:md5_checksum":["adfd86bbf2573c37d862e27e08f332db"],"pds:File.pds:file_name":["readme.txt"],"pds:Bundle_Member_Entry.pds:reference_type":["bundle_has_data_collection","bundle_has_data_collection","bundle_has_data_collection","bundle_has_document_collection"],"vid":["2.1"],"product_class":["Product_Bundle"],"pds:Stream_Text.pds:offset":["0"],"pds:Time_Coordinates.pds:stop_date_time":["3000-01-01T00:00:00.000Z"],"pds:Primary_Result_Summary.pds:processing_level":["Raw","Calibrated","Derived"],"pds:Observing_System_Component.pds:type":["Spacecraft","Instrument"],"pds:Stream_Text.pds:record_delimiter":["Carriage-Return Line-Feed"],"ops:Label_File_Info.ops:file_ref":["/data/bundle_insight_rad.xml"],"ops:Harvest_Info.ops:harvest_date_time":["2022-03-09T21:31:36.146401Z"],"ops:Data_File_Info.ops:mime_type":["text/plain"],"pds:Target_Identification.pds:name":["Mars"],"ops:Data_File_Info.ops:md5_checksum":["192de32c12437c180a9e14d60fe4b89a"],"pds:Identification_Area.pds:title":["Mars InSight Lander Radiometer Data Archive"],"pds:Observing_System_Component.pds:name":["InSight","RADIOMETER"],"pds:Bundle.pds:bundle_type":["Archive"],"pds:Stream_Text.pds:local_identifier":["BUNDLE.DESCRIPTION"],"pds:Investigation_Area.pds:name":["InSight"],"ops:Label_File_Info.ops:creation_date_time":["2020-01-15T17:40:30Z"],"pds:File.pds:comment":["Introduction to the bundle"],"pds:Bundle_Member_Entry.pds:lid_reference":["urn:nasa:pds:insight_rad:data_raw","urn:nasa:pds:insight_rad:data_calibrated","urn:nasa:pds:insight_rad:data_derived","urn:nasa:pds:insight_documents:document_hp3rad"],"pds:Identification_Area.pds:product_class":["Product_Bundle"],"pds:Citation_Information.pds:author_list":["InSight RAD Science Team"],"ref_lid_collection_secondary":["urn:nasa:pds:insight_documents:document_hp3rad"],"ref_lid_instrument_host":["urn:nasa:pds:context:instrument_host:spacecraft.insight"],"description":["The InSight Radiometer data bundle consists of data in three collections: data_raw, data_calibrated, and data_derived. The bundle also includes the HP3/RAD Software Interface Specification in the HP3/RAD document collection.","Pre-peer review version","First release","The collections urn:nasa:pds:insight_rad:data_calibrated and urn:nasa:pds:insight_rad:data_derived were added to this bundle with InSight Release 1b.","Changed Observing_System_Component name in this label from RAD to RADIOMETER to match context product name. Expanded Citation_Information description."],"pds:Citation_Information.pds:publication_year":["2018"],"pds:Citation_Information.pds:doi":["10.17189/1517568"],"ops:Harvest_Info.ops:node_name":["PDS_ENG"],"title":["Mars InSight Lander Radiometer Data Archive"],"ops:Data_File_Info.ops:file_ref":["/data/readme.txt"],"_package_id":["a4d298c6-1d1b-46ae-8497-2f6714858b70"],"ref_lid_collection":["urn:nasa:pds:insight_rad:data_calibrated","urn:nasa:pds:insight_rad:data_derived","urn:nasa:pds:insight_rad:data_raw"],"ops:Data_File_Info.ops:creation_date_time":["2020-01-03T17:58:09Z"],"pds:Identification_Area.pds:version_id":["2.1"],"pds:Citation_Information.pds:description":["The InSight Radiometer data bundle consists of data in three collections: data_raw, data_calibrated, and data_derived. The bundle also includes the HP3/RAD Software Interface Specification in the HP3/RAD document collection."],"pds:Primary_Result_Summary.pds:purpose":["Science"],"pds:Internal_Reference.pds:reference_type":["bundle_to_investigation","is_instrument_host","is_instrument","bundle_to_target"],"pds:Identification_Area.pds:information_model_version":["1.11.0.0"],"pds:Internal_Reference.pds:lid_reference":["urn:nasa:pds:context:investigation:mission.insight","urn:nasa:pds:context:instrument_host:spacecraft.insight","urn:nasa:pds:context:instrument:radiometer.insight","urn:nasa:pds:context:target:planet.mars"],"pds:Science_Facets.pds:domain":["Surface"],"pds:Identification_Area.pds:logical_identifier":["urn:nasa:pds:insight_rad"],"pds:Time_Coordinates.pds:start_date_time":["2018-05-05T00:00:00Z"],"ops:Data_File_Info.ops:file_size":["1114"],"pds:Observing_System.pds:name":["InSight"],"ref_lid_investigation":["urn:nasa:pds:context:investigation:mission.insight"],"lidvid":["urn:nasa:pds:insight_rad::2.1"],"pds:Modification_Detail.pds:version_id":["0.1","1.0","2.0","2.1"],"ops:Label_File_Info.ops:file_size":["6805"],"ops:Data_File_Info.ops:file_name":["readme.txt"],"ops:Label_File_Info.ops:file_name":["bundle_insight_rad.xml"],"pds:Stream_Text.pds:parsing_standard_id":["7-Bit ASCII Text"],"pds:Target_Identification.pds:type":["Planet"],"ref_lid_target":["urn:nasa:pds:context:target:planet.mars"],"pds:Science_Facets.pds:discipline_name":["Geosciences"],"pds:Investigation_Area.pds:type":["Mission"]}}]}

Or more succinctly:

$ curl --location --request GET 'http://localhost:8080/products/urn:nasa:pds:insight_rad:data_derived:hp3_rad_der_00014_20181211_073042::1.0/bundles?fields=lidvid' --header 'Accept: application/kvp+json'
{
  "summary":{"q":"","hits":1,"took":12,"start":0,"limit":100,"sort":[],"properties":["lidvid"]},
  "data":[    {
      "lidvid":"urn:nasa:pds:insight_rad::2.1"    }
  ]
}

Looks alright. Is your database working or is it broken (did not build all references)? Did something change with the test data that breaks the database such that this no longer works? Maybe using wrong code?

@jordanpadams
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@jimmie @tloubrieu-jpl what version the API do we have deployed on AWS?

@jordanpadams
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no longer and issue. this query works at pds.nasa.gov

curl --location --request GET 'https://pds.nasa.gov/api/search/1.0/products/urn:nasa:pds:insight_rad:data_derived:hp3_rad_der_00014_20181211_073042::1.0/bundles' --header 'Accept: application/json'
{
   "data" : [
      {
         "id" : "urn:nasa:pds:insight_rad::2.1",
         "investigations" : [
            {
               "href" : "http://pds.nasa.gov/products/urn:nasa:pds:context:investigation:mission.insight",
               "id" : "urn:nasa:pds:context:investigation:mission.insight"
            }
         ],
         "metadata" : {
            "label_url" : "https://pds-geosciences.wustl.edu/insight/urn-nasa-pds-insight_rad/bundle_insight_rad.xml",
            "update_date_time" : "2018-02-01T00:00:00Z",
            "version" : "2.1"
         },
         "observing_system_components" : [
            {
               "href" : "http://pds.nasa.gov/products/urn:nasa:pds:context:instrument_host:spacecraft.insight",
               "id" : "urn:nasa:pds:context:instrument_host:spacecraft.insight"
            },
            {
               "href" : "http://pds.nasa.gov/products/urn:nasa:pds:context:instrument:radiometer.insight",
               "id" : "urn:nasa:pds:context:instrument:radiometer.insight"
            }
         ],
         "properties" : {
            "_package_id" : [
               "41632972-f360-4790-9fd9-566dd634d6c7"
            ],
            "description" : [
               "The InSight Radiometer data bundle consists of data in three collections: data_raw, data_calibrated, and data_derived. The bundle also includes the HP3/RAD Software Interface Specification in the HP3/RAD document collection.",
               "Pre-peer review version",
               "First release",
               "The collections urn:nasa:pds:insight_rad:data_calibrated and urn:nasa:pds:insight_rad:data_derived were added to this bundle with InSight Release 1b.",
               "Changed Observing_System_Component name in this label from RAD to RADIOMETER to match context product name. Expanded Citation_Information description."
            ],
            "lid" : [
               "urn:nasa:pds:insight_rad"
            ],
            "lidvid" : [
               "urn:nasa:pds:insight_rad::2.1"
            ],
            "ops:Data_File_Info.ops:creation_date_time" : [
               "2019-09-12T21:18:40Z"
            ],
            "ops:Data_File_Info.ops:file_name" : [
               "readme.txt"
            ],
            "ops:Data_File_Info.ops:file_ref" : [
               "https://pds-geosciences.wustl.edu/insight/urn-nasa-pds-insight_rad/readme.txt"
            ],
            "ops:Data_File_Info.ops:file_size" : [
               "1114"
            ],
            "ops:Data_File_Info.ops:md5_checksum" : [
               "192de32c12437c180a9e14d60fe4b89a"
            ],
            "ops:Data_File_Info.ops:mime_type" : [
               "text/plain"
            ],
            "ops:Harvest_Info.ops:harvest_date_time" : [
               "2021-11-16T06:02:03.510294400Z"
            ],
            "ops:Harvest_Info.ops:node_name" : [
               "PDS_GEO"
            ],
            "ops:Label_File_Info.ops:creation_date_time" : [
               "2019-09-12T21:18:40Z"
            ],
            "ops:Label_File_Info.ops:file_name" : [
               "bundle_insight_rad.xml"
            ],
            "ops:Label_File_Info.ops:file_ref" : [
               "https://pds-geosciences.wustl.edu/insight/urn-nasa-pds-insight_rad/bundle_insight_rad.xml"
            ],
            "ops:Label_File_Info.ops:file_size" : [
               "6805"
            ],
            "ops:Label_File_Info.ops:md5_checksum" : [
               "adfd86bbf2573c37d862e27e08f332db"
            ],
            "ops:Tracking_Meta.ops:archive_status" : [
               "archived"
            ],
            "pds:Bundle.pds:bundle_type" : [
               "Archive"
            ],
            "pds:Bundle_Member_Entry.pds:lid_reference" : [
               "urn:nasa:pds:insight_rad:data_raw",
               "urn:nasa:pds:insight_rad:data_calibrated",
               "urn:nasa:pds:insight_rad:data_derived",
               "urn:nasa:pds:insight_documents:document_hp3rad"
            ],
            "pds:Bundle_Member_Entry.pds:member_status" : [
               "Primary",
               "Primary",
               "Primary",
               "Secondary"
            ],
            "pds:Bundle_Member_Entry.pds:reference_type" : [
               "bundle_has_data_collection",
               "bundle_has_data_collection",
               "bundle_has_data_collection",
               "bundle_has_document_collection"
            ],
            "pds:Citation_Information.pds:author_list" : [
               "InSight RAD Science Team"
            ],
            "pds:Citation_Information.pds:description" : [
               "The InSight Radiometer data bundle consists of data in three collections: data_raw, data_calibrated, and data_derived. The bundle also includes the HP3/RAD Software Interface Specification in the HP3/RAD document collection."
            ],
            "pds:Citation_Information.pds:doi" : [
               "10.17189/1517568"
            ],
            "pds:Citation_Information.pds:publication_year" : [
               "2018"
            ],
            "pds:File.pds:comment" : [
               "Introduction to the bundle"
            ],
            "pds:File.pds:file_name" : [
               "readme.txt"
            ],
            "pds:Identification_Area.pds:information_model_version" : [
               "1.11.0.0"
            ],
            "pds:Identification_Area.pds:logical_identifier" : [
               "urn:nasa:pds:insight_rad"
            ],
            "pds:Identification_Area.pds:product_class" : [
               "Product_Bundle"
            ],
            "pds:Identification_Area.pds:title" : [
               "Mars InSight Lander Radiometer Data Archive"
            ],
            "pds:Identification_Area.pds:version_id" : [
               "2.1"
            ],
            "pds:Internal_Reference.pds:lid_reference" : [
               "urn:nasa:pds:context:investigation:mission.insight",
               "urn:nasa:pds:context:instrument_host:spacecraft.insight",
               "urn:nasa:pds:context:instrument:radiometer.insight",
               "urn:nasa:pds:context:target:planet.mars"
            ],
            "pds:Internal_Reference.pds:reference_type" : [
               "bundle_to_investigation",
               "is_instrument_host",
               "is_instrument",
               "bundle_to_target"
            ],
            "pds:Investigation_Area.pds:name" : [
               "InSight"
            ],
            "pds:Investigation_Area.pds:type" : [
               "Mission"
            ],
            "pds:Modification_Detail.pds:description" : [
               "Pre-peer review version",
               "First release",
               "The collections urn:nasa:pds:insight_rad:data_calibrated and urn:nasa:pds:insight_rad:data_derived were added to this bundle with InSight Release 1b.",
               "Changed Observing_System_Component name in this label from RAD to RADIOMETER to match context product name. Expanded Citation_Information description."
            ],
            "pds:Modification_Detail.pds:modification_date" : [
               "2018-02-01T00:00:00Z",
               "2019-04-22T00:00:00Z",
               "2019-06-11T00:00:00Z",
               "2020-01-02T00:00:00Z"
            ],
            "pds:Modification_Detail.pds:version_id" : [
               "0.1",
               "1.0",
               "2.0",
               "2.1"
            ],
            "pds:Observing_System.pds:name" : [
               "InSight"
            ],
            "pds:Observing_System_Component.pds:name" : [
               "InSight",
               "RADIOMETER"
            ],
            "pds:Observing_System_Component.pds:type" : [
               "Spacecraft",
               "Instrument"
            ],
            "pds:Primary_Result_Summary.pds:processing_level" : [
               "Raw",
               "Calibrated",
               "Derived"
            ],
            "pds:Primary_Result_Summary.pds:purpose" : [
               "Science"
            ],
            "pds:Science_Facets.pds:discipline_name" : [
               "Geosciences"
            ],
            "pds:Science_Facets.pds:domain" : [
               "Surface"
            ],
            "pds:Stream_Text.pds:local_identifier" : [
               "BUNDLE.DESCRIPTION"
            ],
            "pds:Stream_Text.pds:name" : [
               "Introduction to the Radiometer Data Bundle"
            ],
            "pds:Stream_Text.pds:offset" : [
               "0"
            ],
            "pds:Stream_Text.pds:parsing_standard_id" : [
               "7-Bit ASCII Text"
            ],
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            "pds:Target_Identification.pds:name" : [
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         },
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         "title" : "Mars InSight Lander Radiometer Data Archive",
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}

@jordanpadams jordanpadams added the invalid This doesn't seem right label Jun 10, 2022
@tloubrieu-jpl
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@jordanpadams

The version deployed on AWS is 1.0.0.

The latest stable version, since yesterday is 1.0.1.

I will close this ticket.

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