Integration of Monailabel and Girder

[Aurora-God]

Hello, I would like to integrate Monailabel with Girder as the data source, and both Monailabel and Girder will be launched using Docker
The problem I encountered:
I used the official image of Monailabel, version: projectmonai/Monailabel: 0.8.0
After entering the container, I used the command to start monai: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies http://girder_username:girder_password @Girder_ip: girder_port/api/v1-- conf models deepedit -- conf datasets. dataset1. source girder -- conf girder.api_token<api_key I created from the girder web page>
But when I access this address: http://monai_ip:8000/ohif/ , will jump here: http://monai_ip:8000/ohif/notfoundserver Unable to access my data in Girder
I'm not sure where the problem is, but I can be certain that the Docker port and IP address are not the problem, and I started it in the same way (different startup commands: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies) http://username:password @Orthanc_ip: Orthanc_ port/dicom web -- conf models deepedit
）Can connect to Orthanc to access its data
Please help me, thank you

[AHarouni]

Hi Aurora
I am not familiar with Girder, does it use dicom web to access data ? If not you need to figure how Grider exposes data and write a datastore to allow this communication. Check other datastores as xnat / cvat etc.

if it does use dicom web then you should check that you are able to access data using the Grider_ip:port
then the issue might be in the user / password being passed since 0.7 or so it changed to be passed as variables as

export MONAI_LABEL_DICOMWEB_USERNAME=orthanc
export MONAI_LABEL_DICOMWEB_PASSWORD=orthanc

Hope that helps

[Aurora-God]

Thank you very much for your reply. Girder is probably not DICOMWEB. I think it should be similar to XNAT. So, how does Monailabel link XNAT ？

[AHarouni]

You only need to implement the datastore interface
https://github.com/Project-MONAI/MONAILabel/blob/main/monailabel/interfaces/datastore.py
you can see how xnat did it here
https://github.com/Project-MONAI/MONAILabel/blob/main/monailabel/datastore/xnat.py

You can always add variables to get user name and password to connect