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Better error handling #16

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bfjia opened this issue Nov 16, 2018 · 1 comment
Open

Better error handling #16

bfjia opened this issue Nov 16, 2018 · 1 comment

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@bfjia
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bfjia commented Nov 16, 2018

Currently, if anything unexpected happens (e.g. a reference genome is not found), the workflow will raise an exception and crash. In the future, we want to add logic to somewhat recover from these errors and attempt to continue the workflow as much as possible.
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bfjia commented Nov 16, 2018

As part of this, we should also check for existence of result files to make sure all of the 3rd party programs successfully completed.

@bfjia bfjia mentioned this issue Dec 4, 2018
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