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<section id="migrating-from-pytables-2-x-to-3-x">
<h1>Migrating from PyTables 2.x to 3.x<a class="headerlink" href="#migrating-from-pytables-2-x-to-3-x" title="Link to this heading"></a></h1>
<dl class="field-list simple">
<dt class="field-odd">Author<span class="colon">:</span></dt>
<dd class="field-odd"><p>Antonio Valentino</p>
</dd>
<dt class="field-even">Author<span class="colon">:</span></dt>
<dd class="field-even"><p>Anthony Scopatz</p>
</dd>
<dt class="field-odd">Author<span class="colon">:</span></dt>
<dd class="field-odd"><p>Thomas Provoost</p>
</dd>
</dl>
<p>This document describes the major changes in PyTables in going from the
2.x to 3.x series and what you need to know when migrating downstream
code bases.</p>
<section id="python-3-at-last">
<h2>Python 3 at Last!<a class="headerlink" href="#python-3-at-last" title="Link to this heading"></a></h2>
<p>The PyTables 3.x series now ships with full compatibility for Python 3.1+.
Additionally, we plan on maintaining compatibility with Python 2.7 for the
foreseeable future. Python 2.6 is no longer supported but
may work in most cases. Note that the entire 3.x series now relies on
numexpr v2.1+, which itself is the first version of numexpr support both
Python 2 & 3.</p>
</section>
<section id="numeric-numarray-netcdf3-hdf5-1-6-no-more">
<h2>Numeric, Numarray, NetCDF3, & HDF5 1.6 No More!<a class="headerlink" href="#numeric-numarray-netcdf3-hdf5-1-6-no-more" title="Link to this heading"></a></h2>
<p>PyTables no longer supports numeric and numarray. Please use numpy instead.
Additionally, the <code class="docutils literal notranslate"><span class="pre">tables.netcdf3</span></code> module has been removed. Please refer
to the <a class="reference external" href="http://code.google.com/p/netcdf4-python/">netcdf4-python</a> project for further support. Lastly, the older
HDF5 1.6 API is no longer supported. Please upgrade to HDF5 1.8+.</p>
</section>
<section id="unicode-all-the-strings">
<h2>Unicode all the strings!<a class="headerlink" href="#unicode-all-the-strings" title="Link to this heading"></a></h2>
<p>In Python 3, all strings are natively in Unicode. This introduces some
difficulties, as the native HDF5 string format is not Unicode-compatible.
To minimize explicit conversion troubles when writing, especially <a class="reference internal" href="#create-signatures"><span class="std std-ref">when
creating data sets from existing Python objects</span></a>, string
objects are implicitly cast to non-Unicode for HDF5 storage. To make you
aware of this, a warning is raised when this happens.</p>
<p>This is certainly no true Unicode compatibility, but mainly for convenience
with the pure-Unicode Python 3 string type. Any string that is not castable
as ascii upon creation of your data set, will hence still raise an error.
For true Unicode support, look into the <code class="docutils literal notranslate"><span class="pre">VLUnicodeAtom</span></code> class.</p>
</section>
<section id="major-api-changes">
<h2>Major API Changes<a class="headerlink" href="#major-api-changes" title="Link to this heading"></a></h2>
<p>The PyTables developers, <a class="reference external" href="http://sourceforge.net/mailarchive/message.php?msg_id=29584752">by popular demand</a>, have taken this opportunity
that a major version number upgrade affords to implement significant API
changes. We have tried to do this in such a way that will not immediately
break most existing code, though in some breakages may still occur.</p>
<section id="pep-8-compliance">
<h3>PEP 8 Compliance<a class="headerlink" href="#pep-8-compliance" title="Link to this heading"></a></h3>
<p>The PyTables 3.x series now follows <a class="reference external" href="http://www.python.org/dev/peps/pep-0008/">PEP 8</a> coding standard. This makes
using PyTables more idiomatic with surrounding Python code that also adheres
to this standard. The primary way that the 2.x series was <em>not</em> PEP 8
compliant was with respect to variable naming conventions. Approximately
<a class="reference internal" href="#api-name-changes"><span class="std std-ref">450 API variables</span></a> were identified and updated for
PyTables 3.x.</p>
<p>To ease migration, PyTables ships with a new <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> command line tool.
This tool will run over a file and replace any instances of the old variable
names with the 3.x version of the name. This tool covers the overwhelming
majority of cases was used to transition the PyTables code base itself! However,
it may also accidentally also pick up variable names in 3rd party codes that
have <em>exactly</em> the same name as a PyTables’ variable. This is because <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code>
was implemented using regular expressions rather than a fancier AST-based
method. By using regexes, <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> works on Python and Cython code.</p>
<p><code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> <strong>help:</strong></p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>usage:<span class="w"> </span>pt2to3<span class="w"> </span><span class="o">[</span>-h<span class="o">]</span><span class="w"> </span><span class="o">[</span>-r<span class="o">]</span><span class="w"> </span><span class="o">[</span>-p<span class="o">]</span><span class="w"> </span><span class="o">[</span>-o<span class="w"> </span>OUTPUT<span class="o">]</span><span class="w"> </span><span class="o">[</span>-i<span class="o">]</span><span class="w"> </span>filename
PyTables<span class="w"> </span><span class="m">2</span>.x<span class="w"> </span>-><span class="w"> </span><span class="m">3</span>.x<span class="w"> </span>API<span class="w"> </span>transition<span class="w"> </span>tool<span class="w"> </span>This<span class="w"> </span>tool<span class="w"> </span>displays<span class="w"> </span>to<span class="w"> </span>standard<span class="w"> </span>out,<span class="w"> </span>so
it<span class="w"> </span>is<span class="w"> </span>common<span class="w"> </span>to<span class="w"> </span>pipe<span class="w"> </span>this<span class="w"> </span>to<span class="w"> </span>another<span class="w"> </span>file:<span class="w"> </span>$<span class="w"> </span>pt2to3<span class="w"> </span>oldfile.py<span class="w"> </span>><span class="w"> </span>newfile.py
positional<span class="w"> </span>arguments:
<span class="w"> </span>filename<span class="w"> </span>path<span class="w"> </span>to<span class="w"> </span>input<span class="w"> </span>file.
optional<span class="w"> </span>arguments:
<span class="w"> </span>-h,<span class="w"> </span>--help<span class="w"> </span>show<span class="w"> </span>this<span class="w"> </span><span class="nb">help</span><span class="w"> </span>message<span class="w"> </span>and<span class="w"> </span><span class="nb">exit</span>
<span class="w"> </span>-r,<span class="w"> </span>--reverse<span class="w"> </span>reverts<span class="w"> </span>changes,<span class="w"> </span>going<span class="w"> </span>from<span class="w"> </span><span class="m">3</span>.x<span class="w"> </span>-><span class="w"> </span><span class="m">2</span>.x.
<span class="w"> </span>-p,<span class="w"> </span>--no-ignore-previous
<span class="w"> </span>ignores<span class="w"> </span>previous_api<span class="o">()</span><span class="w"> </span>calls.
<span class="w"> </span>-o<span class="w"> </span>OUTPUT<span class="w"> </span>output<span class="w"> </span>file<span class="w"> </span>to<span class="w"> </span>write<span class="w"> </span>to.
<span class="w"> </span>-i,<span class="w"> </span>--inplace<span class="w"> </span>overwrites<span class="w"> </span>the<span class="w"> </span>file<span class="w"> </span><span class="k">in</span>-place.
</pre></div>
</div>
<p>Note that <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> only works on a single file, not a directory. However,
a simple BASH script may be written to run <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> over an entire directory
and all sub-directories:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="ch">#!/bin/bash</span>
<span class="k">for</span><span class="w"> </span>f<span class="w"> </span><span class="k">in</span><span class="w"> </span><span class="k">$(</span>find<span class="w"> </span>.<span class="k">)</span>
<span class="k">do</span>
<span class="w"> </span><span class="nb">echo</span><span class="w"> </span><span class="nv">$f</span>
<span class="w"> </span>pt2to3<span class="w"> </span><span class="nv">$f</span><span class="w"> </span>><span class="w"> </span>temp.txt
<span class="w"> </span>mv<span class="w"> </span>temp.txt<span class="w"> </span><span class="nv">$f</span>
<span class="k">done</span>
</pre></div>
</div>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p><strong class="program">pt2to3</strong> uses the <code class="xref py py-mod docutils literal notranslate"><span class="pre">argparse</span></code> module that is part of the
Python standard library since Python 2.7.
Users of Python 2.6 should install <code class="xref py py-mod docutils literal notranslate"><span class="pre">argparse</span></code> separately
(e.g. via <strong class="program">pip</strong>).</p>
</div>
<p>The old APIs and variable names will continue to be supported for the short term,
where possible. (The major backwards incompatible changes come from the renaming
of some function and method arguments and keyword arguments.) Using the 2.x APIs
in the 3.x series, however, will issue warnings. The following is the release
plan for the warning types:</p>
<ul class="simple">
<li><p>3.0 - PendingDeprecationWarning</p></li>
<li><p>3.1 - DeprecationWarning</p></li>
<li><p>>=3.2 - Remove warnings, previous_api(), and _past.py; keep pt2to3,</p></li>
</ul>
<p>The current plan is to maintain the old APIs for at least 2 years, though this
is subject to change.</p>
</section>
<section id="consistent-create-xxx-signatures">
<span id="create-signatures"></span><h3>Consistent <code class="docutils literal notranslate"><span class="pre">create_xxx()</span></code> Signatures<a class="headerlink" href="#consistent-create-xxx-signatures" title="Link to this heading"></a></h3>
<p>Also by popular demand, it is now possible to create all data sets (<code class="docutils literal notranslate"><span class="pre">Array</span></code>,
<code class="docutils literal notranslate"><span class="pre">CArray</span></code>, <code class="docutils literal notranslate"><span class="pre">EArray</span></code>, <code class="docutils literal notranslate"><span class="pre">VLArray</span></code>, and <code class="docutils literal notranslate"><span class="pre">Table</span></code>) from existing Python objects.
Constructors for these classes now accept either of the following keyword arguments:</p>
<ul class="simple">
<li><p>an <code class="docutils literal notranslate"><span class="pre">obj</span></code> to initialize with data</p></li>
<li><p>or both <code class="docutils literal notranslate"><span class="pre">atom</span></code> and <code class="docutils literal notranslate"><span class="pre">shape</span></code> to initialize an empty structure, if possible.</p></li>
</ul>
<p>These keyword arguments are also now part of the function signature for the
corresponding <code class="docutils literal notranslate"><span class="pre">create_xxx()</span></code> methods on the <code class="docutils literal notranslate"><span class="pre">File</span></code> class. These would be called
as follows:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># All create methods will support the following</span>
<span class="n">create_xxx</span><span class="p">(</span><span class="n">where</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">obj</span><span class="o">=</span><span class="n">obj</span><span class="p">)</span>
<span class="c1"># All non-variable length arrays support the following:</span>
<span class="n">create_xxx</span><span class="p">(</span><span class="n">where</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">atom</span><span class="o">=</span><span class="n">atom</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="n">shape</span><span class="p">)</span>
</pre></div>
</div>
<p>Using <code class="docutils literal notranslate"><span class="pre">obj</span></code> or <code class="docutils literal notranslate"><span class="pre">atom</span></code> and <code class="docutils literal notranslate"><span class="pre">shape</span></code> are mutually exclusive. Previously only
<code class="docutils literal notranslate"><span class="pre">Array</span></code> could be created with an existing Python object using the <code class="docutils literal notranslate"><span class="pre">object</span></code>
keyword argument.</p>
</section>
<section id="api-name-changes">
<span id="id1"></span><h3>API Name Changes<a class="headerlink" href="#api-name-changes" title="Link to this heading"></a></h3>
<p>The following tables shows the old 2.x names that have been update to their
new values in the new 3.x series. Please use the <code class="docutils literal notranslate"><span class="pre">pt2to3</span></code> tool to convert
between these.</p>
<table class="docutils align-default">
<thead>
<tr class="row-odd"><th class="head"><p><strong>2.x Name</strong></p></th>
<th class="head"><p><strong>3.x Name</strong></p></th>
</tr>
</thead>
<tbody>
<tr class="row-even"><td><p>AtomFromHDF5Type</p></td>
<td><p>atom_from_hdf5_type</p></td>
</tr>
<tr class="row-odd"><td><p>AtomToHDF5Type</p></td>
<td><p>atom_to_hdf5_type</p></td>
</tr>
<tr class="row-even"><td><p>BoolTypeNextAfter</p></td>
<td><p>bool_type_next_after</p></td>
</tr>
<tr class="row-odd"><td><p>HDF5ClassToString</p></td>
<td><p>hdf5_class_to_string</p></td>
</tr>
<tr class="row-even"><td><p>HDF5ToNPExtType</p></td>
<td><p>hdf5_to_np_ext_type</p></td>
</tr>
<tr class="row-odd"><td><p>HDF5ToNPNestedType</p></td>
<td><p>hdf5_to_np_nested_type</p></td>
</tr>
<tr class="row-even"><td><p>IObuf</p></td>
<td><p>iobuf</p></td>
</tr>
<tr class="row-odd"><td><p>IObufcpy</p></td>
<td><p>iobufcpy</p></td>
</tr>
<tr class="row-even"><td><p>IntTypeNextAfter</p></td>
<td><p>int_type_next_after</p></td>
</tr>
<tr class="row-odd"><td><p>NPExtPrefixesToPTKinds</p></td>
<td><p>npext_prefixes_to_ptkinds</p></td>
</tr>
<tr class="row-even"><td><p>PTSpecialKinds</p></td>
<td><p>pt_special_kinds</p></td>
</tr>
<tr class="row-odd"><td><p>PTTypeToHDF5</p></td>
<td><p>pttype_to_hdf5</p></td>
</tr>
<tr class="row-even"><td><p>StringNextAfter</p></td>
<td><p>string_next_after</p></td>
</tr>
<tr class="row-odd"><td><p>__allowedInitKwArgs</p></td>
<td><p>__allowed_init_kwargs</p></td>
</tr>
<tr class="row-even"><td><p>__getRootGroup</p></td>
<td><p>__get_root_group</p></td>
</tr>
<tr class="row-odd"><td><p>__next__inKernel</p></td>
<td><p>__next__inkernel</p></td>
</tr>
<tr class="row-even"><td><p>_actionLogName</p></td>
<td><p>_action_log_name</p></td>
</tr>
<tr class="row-odd"><td><p>_actionLogParent</p></td>
<td><p>_action_log_parent</p></td>
</tr>
<tr class="row-even"><td><p>_actionLogPath</p></td>
<td><p>_action_log_path</p></td>
</tr>
<tr class="row-odd"><td><p>_addRowsToIndex</p></td>
<td><p>_add_rows_to_index</p></td>
</tr>
<tr class="row-even"><td><p>_appendZeros</p></td>
<td><p>_append_zeros</p></td>
</tr>
<tr class="row-odd"><td><p>_autoIndex</p></td>
<td><p>_autoindex</p></td>
</tr>
<tr class="row-even"><td><p>_byteShape</p></td>
<td><p>_byte_shape</p></td>
</tr>
<tr class="row-odd"><td><p>_c_classId</p></td>
<td><p>_c_classid</p></td>
</tr>
<tr class="row-even"><td><p>_c_shadowNameRE</p></td>
<td><p>_c_shadow_name_re</p></td>
</tr>
<tr class="row-odd"><td><p>_cacheDescriptionData</p></td>
<td><p>_cache_description_data</p></td>
</tr>
<tr class="row-even"><td><p>_checkAndSetPair</p></td>
<td><p>_check_and_set_pair</p></td>
</tr>
<tr class="row-odd"><td><p>_checkAttributes</p></td>
<td><p>_check_attributes</p></td>
</tr>
<tr class="row-even"><td><p>_checkBase</p></td>
<td><p>_checkbase</p></td>
</tr>
<tr class="row-odd"><td><p>_checkColumn</p></td>
<td><p>_check_column</p></td>
</tr>
<tr class="row-even"><td><p>_checkGroup</p></td>
<td><p>_check_group</p></td>
</tr>
<tr class="row-odd"><td><p>_checkNotClosed</p></td>
<td><p>_check_not_closed</p></td>
</tr>
<tr class="row-even"><td><p>_checkOpen</p></td>
<td><p>_check_open</p></td>
</tr>
<tr class="row-odd"><td><p>_checkShape</p></td>
<td><p>_check_shape</p></td>
</tr>
<tr class="row-even"><td><p>_checkShapeAppend</p></td>
<td><p>_check_shape_append</p></td>
</tr>
<tr class="row-odd"><td><p>_checkUndoEnabled</p></td>
<td><p>_check_undo_enabled</p></td>
</tr>
<tr class="row-even"><td><p>_checkWritable</p></td>
<td><p>_check_writable</p></td>
</tr>
<tr class="row-odd"><td><p>_check_sortby_CSI</p></td>
<td><p>_check_sortby_csi</p></td>
</tr>
<tr class="row-even"><td><p>_closeFile</p></td>
<td><p>_close_file</p></td>
</tr>
<tr class="row-odd"><td><p>_codeToOp</p></td>
<td><p>_code_to_op</p></td>
</tr>
<tr class="row-even"><td><p>_column__createIndex</p></td>
<td><p>_column__create_index</p></td>
</tr>
<tr class="row-odd"><td><p>_compileCondition</p></td>
<td><p>_compile_condition</p></td>
</tr>
<tr class="row-even"><td><p>_conditionCache</p></td>
<td><p>_condition_cache</p></td>
</tr>
<tr class="row-odd"><td><p>_convertTime64</p></td>
<td><p>_convert_time64</p></td>
</tr>
<tr class="row-even"><td><p>_convertTime64_</p></td>
<td><p>_convert_time64_</p></td>
</tr>
<tr class="row-odd"><td><p>_convertTypes</p></td>
<td><p>_convert_types</p></td>
</tr>
<tr class="row-even"><td><p>_createArray</p></td>
<td><p>_create_array</p></td>
</tr>
<tr class="row-odd"><td><p>_createCArray</p></td>
<td><p>_create_carray</p></td>
</tr>
<tr class="row-even"><td><p>_createMark</p></td>
<td><p>_create_mark</p></td>
</tr>
<tr class="row-odd"><td><p>_createPath</p></td>
<td><p>_create_path</p></td>
</tr>
<tr class="row-even"><td><p>_createTable</p></td>
<td><p>_create_table</p></td>
</tr>
<tr class="row-odd"><td><p>_createTransaction</p></td>
<td><p>_create_transaction</p></td>
</tr>
<tr class="row-even"><td><p>_createTransactionGroup</p></td>
<td><p>_create_transaction_group</p></td>
</tr>
<tr class="row-odd"><td><p>_disableIndexingInQueries</p></td>
<td><p>_disable_indexing_in_queries</p></td>
</tr>
<tr class="row-even"><td><p>_doReIndex</p></td>
<td><p>_do_reindex</p></td>
</tr>
<tr class="row-odd"><td><p>_emptyArrayCache</p></td>
<td><p>_empty_array_cache</p></td>
</tr>
<tr class="row-even"><td><p>_enableIndexingInQueries</p></td>
<td><p>_enable_indexing_in_queries</p></td>
</tr>
<tr class="row-odd"><td><p>_enabledIndexingInQueries</p></td>
<td><p>_enabled_indexing_in_queries</p></td>
</tr>
<tr class="row-even"><td><p>_exprvarsCache</p></td>
<td><p>_exprvars_cache</p></td>
</tr>
<tr class="row-odd"><td><p>_f_copyChildren</p></td>
<td><p>_f_copy_children</p></td>
</tr>
<tr class="row-even"><td><p>_f_delAttr</p></td>
<td><p>_f_delattr</p></td>
</tr>
<tr class="row-odd"><td><p>_f_getAttr</p></td>
<td><p>_f_getattr</p></td>
</tr>
<tr class="row-even"><td><p>_f_getChild</p></td>
<td><p>_f_get_child</p></td>
</tr>
<tr class="row-odd"><td><p>_f_isVisible</p></td>
<td><p>_f_isvisible</p></td>
</tr>
<tr class="row-even"><td><p>_f_iterNodes</p></td>
<td><p>_f_iter_nodes</p></td>
</tr>
<tr class="row-odd"><td><p>_f_listNodes</p></td>
<td><p>_f_list_nodes</p></td>
</tr>
<tr class="row-even"><td><p>_f_setAttr</p></td>
<td><p>_f_setattr</p></td>
</tr>
<tr class="row-odd"><td><p>_f_walkGroups</p></td>
<td><p>_f_walk_groups</p></td>
</tr>
<tr class="row-even"><td><p>_f_walkNodes</p></td>
<td><p>_f_walknodes</p></td>
</tr>
<tr class="row-odd"><td><p>_fancySelection</p></td>
<td><p>_fancy_selection</p></td>
</tr>
<tr class="row-even"><td><p>_fillCol</p></td>
<td><p>_fill_col</p></td>
</tr>
<tr class="row-odd"><td><p>_flushBufferedRows</p></td>
<td><p>_flush_buffered_rows</p></td>
</tr>
<tr class="row-even"><td><p>_flushFile</p></td>
<td><p>_flush_file</p></td>
</tr>
<tr class="row-odd"><td><p>_flushModRows</p></td>
<td><p>_flush_mod_rows</p></td>
</tr>
<tr class="row-even"><td><p>_g_addChildrenNames</p></td>
<td><p>_g_add_children_names</p></td>
</tr>
<tr class="row-odd"><td><p>_g_checkGroup</p></td>
<td><p>_g_check_group</p></td>
</tr>
<tr class="row-even"><td><p>_g_checkHasChild</p></td>
<td><p>_g_check_has_child</p></td>
</tr>
<tr class="row-odd"><td><p>_g_checkName</p></td>
<td><p>_g_check_name</p></td>
</tr>
<tr class="row-even"><td><p>_g_checkNotContains</p></td>
<td><p>_g_check_not_contains</p></td>
</tr>
<tr class="row-odd"><td><p>_g_checkOpen</p></td>
<td><p>_g_check_open</p></td>
</tr>
<tr class="row-even"><td><p>_g_closeDescendents</p></td>
<td><p>_g_close_descendents</p></td>
</tr>
<tr class="row-odd"><td><p>_g_closeGroup</p></td>
<td><p>_g_close_group</p></td>
</tr>
<tr class="row-even"><td><p>_g_copyAsChild</p></td>
<td><p>_g_copy_as_child</p></td>
</tr>
<tr class="row-odd"><td><p>_g_copyChildren</p></td>
<td><p>_g_copy_children</p></td>
</tr>
<tr class="row-even"><td><p>_g_copyRows</p></td>
<td><p>_g_copy_rows</p></td>
</tr>
<tr class="row-odd"><td><p>_g_copyRows_optim</p></td>
<td><p>_g_copy_rows_optim</p></td>
</tr>
<tr class="row-even"><td><p>_g_copyWithStats</p></td>
<td><p>_g_copy_with_stats</p></td>
</tr>
<tr class="row-odd"><td><p>_g_createHardLink</p></td>
<td><p>_g_create_hard_link</p></td>
</tr>
<tr class="row-even"><td><p>_g_delAndLog</p></td>
<td><p>_g_del_and_log</p></td>
</tr>
<tr class="row-odd"><td><p>_g_delLocation</p></td>
<td><p>_g_del_location</p></td>
</tr>
<tr class="row-even"><td><p>_g_flushGroup</p></td>
<td><p>_g_flush_group</p></td>
</tr>
<tr class="row-odd"><td><p>_g_getAttr</p></td>
<td><p>_g_getattr</p></td>
</tr>
<tr class="row-even"><td><p>_g_getChildGroupClass</p></td>
<td><p>_g_get_child_group_class</p></td>
</tr>
<tr class="row-odd"><td><p>_g_getChildLeafClass</p></td>
<td><p>_g_get_child_leaf_class</p></td>
</tr>
<tr class="row-even"><td><p>_g_getGChildAttr</p></td>
<td><p>_g_get_gchild_attr</p></td>
</tr>
<tr class="row-odd"><td><p>_g_getLChildAttr</p></td>
<td><p>_g_get_lchild_attr</p></td>
</tr>
<tr class="row-even"><td><p>_g_getLinkClass</p></td>
<td><p>_g_get_link_class</p></td>
</tr>
<tr class="row-odd"><td><p>_g_listAttr</p></td>
<td><p>_g_list_attr</p></td>
</tr>
<tr class="row-even"><td><p>_g_listGroup</p></td>
<td><p>_g_list_group</p></td>
</tr>
<tr class="row-odd"><td><p>_g_loadChild</p></td>
<td><p>_g_load_child</p></td>
</tr>
<tr class="row-even"><td><p>_g_logAdd</p></td>
<td><p>_g_log_add</p></td>
</tr>
<tr class="row-odd"><td><p>_g_logCreate</p></td>
<td><p>_g_log_create</p></td>
</tr>
<tr class="row-even"><td><p>_g_logMove</p></td>
<td><p>_g_log_move</p></td>
</tr>
<tr class="row-odd"><td><p>_g_maybeRemove</p></td>
<td><p>_g_maybe_remove</p></td>
</tr>
<tr class="row-even"><td><p>_g_moveNode</p></td>
<td><p>_g_move_node</p></td>
</tr>
<tr class="row-odd"><td><p>_g_postInitHook</p></td>
<td><p>_g_post_init_hook</p></td>
</tr>
<tr class="row-even"><td><p>_g_postReviveHook</p></td>
<td><p>_g_post_revive_hook</p></td>
</tr>
<tr class="row-odd"><td><p>_g_preKillHook</p></td>
<td><p>_g_pre_kill_hook</p></td>
</tr>
<tr class="row-even"><td><p>_g_propIndexes</p></td>
<td><p>_g_prop_indexes</p></td>
</tr>
<tr class="row-odd"><td><p>_g_readCoords</p></td>
<td><p>_g_read_coords</p></td>
</tr>
<tr class="row-even"><td><p>_g_readSelection</p></td>
<td><p>_g_read_selection</p></td>
</tr>
<tr class="row-odd"><td><p>_g_readSlice</p></td>
<td><p>_g_read_slice</p></td>
</tr>
<tr class="row-even"><td><p>_g_readSortedSlice</p></td>
<td><p>_g_read_sorted_slice</p></td>
</tr>
<tr class="row-odd"><td><p>_g_refNode</p></td>
<td><p>_g_refnode</p></td>
</tr>
<tr class="row-even"><td><p>_g_removeAndLog</p></td>
<td><p>_g_remove_and_log</p></td>
</tr>
<tr class="row-odd"><td><p>_g_setAttr</p></td>
<td><p>_g_setattr</p></td>
</tr>
<tr class="row-even"><td><p>_g_setLocation</p></td>
<td><p>_g_set_location</p></td>
</tr>
<tr class="row-odd"><td><p>_g_setNestedNamesDescr</p></td>
<td><p>_g_set_nested_names_descr</p></td>
</tr>
<tr class="row-even"><td><p>_g_setPathNames</p></td>
<td><p>_g_set_path_names</p></td>
</tr>
<tr class="row-odd"><td><p>_g_unrefNode</p></td>
<td><p>_g_unrefnode</p></td>
</tr>
<tr class="row-even"><td><p>_g_updateDependent</p></td>
<td><p>_g_update_dependent</p></td>
</tr>
<tr class="row-odd"><td><p>_g_updateLocation</p></td>
<td><p>_g_update_location</p></td>
</tr>
<tr class="row-even"><td><p>_g_updateNodeLocation</p></td>
<td><p>_g_update_node_location</p></td>
</tr>
<tr class="row-odd"><td><p>_g_updateTableLocation</p></td>
<td><p>_g_update_table_location</p></td>
</tr>
<tr class="row-even"><td><p>_g_widthWarning</p></td>
<td><p>_g_width_warning</p></td>
</tr>
<tr class="row-odd"><td><p>_g_writeCoords</p></td>
<td><p>_g_write_coords</p></td>
</tr>
<tr class="row-even"><td><p>_g_writeSelection</p></td>
<td><p>_g_write_selection</p></td>
</tr>
<tr class="row-odd"><td><p>_g_writeSlice</p></td>
<td><p>_g_write_slice</p></td>
</tr>
<tr class="row-even"><td><p>_getColumnInstance</p></td>
<td><p>_get_column_instance</p></td>
</tr>
<tr class="row-odd"><td><p>_getConditionKey</p></td>
<td><p>_get_condition_key</p></td>
</tr>
<tr class="row-even"><td><p>_getContainer</p></td>
<td><p>_get_container</p></td>
</tr>
<tr class="row-odd"><td><p>_getEnumMap</p></td>
<td><p>_get_enum_map</p></td>
</tr>
<tr class="row-even"><td><p>_getFileId</p></td>
<td><p>_get_file_id</p></td>
</tr>
<tr class="row-odd"><td><p>_getFinalAction</p></td>
<td><p>_get_final_action</p></td>
</tr>
<tr class="row-even"><td><p>_getInfo</p></td>
<td><p>_get_info</p></td>
</tr>
<tr class="row-odd"><td><p>_getLinkClass</p></td>
<td><p>_get_link_class</p></td>
</tr>
<tr class="row-even"><td><p>_getMarkID</p></td>
<td><p>_get_mark_id</p></td>
</tr>
<tr class="row-odd"><td><p>_getNode</p></td>
<td><p>_get_node</p></td>
</tr>
<tr class="row-even"><td><p>_getOrCreatePath</p></td>
<td><p>_get_or_create_path</p></td>
</tr>
<tr class="row-odd"><td><p>_getTypeColNames</p></td>
<td><p>_get_type_col_names</p></td>
</tr>
<tr class="row-even"><td><p>_getUnsavedNrows</p></td>
<td><p>_get_unsaved_nrows</p></td>
</tr>
<tr class="row-odd"><td><p>_getValueFromContainer</p></td>
<td><p>_get_value_from_container</p></td>
</tr>
<tr class="row-even"><td><p>_hiddenNameRE</p></td>
<td><p>_hidden_name_re</p></td>
</tr>
<tr class="row-odd"><td><p>_hiddenPathRE</p></td>
<td><p>_hidden_path_re</p></td>
</tr>
<tr class="row-even"><td><p>_indexNameOf</p></td>
<td><p>_index_name_of</p></td>
</tr>
<tr class="row-odd"><td><p>_indexNameOf_</p></td>
<td><p>_index_name_of_</p></td>
</tr>
<tr class="row-even"><td><p>_indexPathnameOf</p></td>
<td><p>_index_pathname_of</p></td>
</tr>
<tr class="row-odd"><td><p>_indexPathnameOfColumn</p></td>
<td><p>_index_pathname_of_column</p></td>
</tr>
<tr class="row-even"><td><p>_indexPathnameOfColumn_</p></td>
<td><p>_index_pathname_of_column_</p></td>
</tr>
<tr class="row-odd"><td><p>_indexPathnameOf_</p></td>
<td><p>_index_pathname_of_</p></td>
</tr>
<tr class="row-even"><td><p>_initLoop</p></td>
<td><p>_init_loop</p></td>
</tr>
<tr class="row-odd"><td><p>_initSortedSlice</p></td>
<td><p>_init_sorted_slice</p></td>
</tr>
<tr class="row-even"><td><p>_isWritable</p></td>
<td><p>_iswritable</p></td>
</tr>
<tr class="row-odd"><td><p>_is_CSI</p></td>
<td><p>_is_csi</p></td>
</tr>
<tr class="row-even"><td><p>_killNode</p></td>
<td><p>_killnode</p></td>
</tr>
<tr class="row-odd"><td><p>_lineChunkSize</p></td>
<td><p>_line_chunksize</p></td>
</tr>
<tr class="row-even"><td><p>_lineSeparator</p></td>
<td><p>_line_separator</p></td>
</tr>
<tr class="row-odd"><td><p>_markColumnsAsDirty</p></td>
<td><p>_mark_columns_as_dirty</p></td>
</tr>
<tr class="row-even"><td><p>_newBuffer</p></td>
<td><p>_new_buffer</p></td>
</tr>
<tr class="row-odd"><td><p>_notReadableError</p></td>
<td><p>_not_readable_error</p></td>
</tr>
<tr class="row-even"><td><p>_npSizeType</p></td>
<td><p>_npsizetype</p></td>
</tr>
<tr class="row-odd"><td><p>_nxTypeFromNPType</p></td>
<td><p>_nxtype_from_nptype</p></td>
</tr>
<tr class="row-even"><td><p>_opToCode</p></td>
<td><p>_op_to_code</p></td>
</tr>
<tr class="row-odd"><td><p>_openArray</p></td>
<td><p>_open_array</p></td>
</tr>
<tr class="row-even"><td><p>_openUnImplemented</p></td>
<td><p>_open_unimplemented</p></td>
</tr>
<tr class="row-odd"><td><p>_pointSelection</p></td>
<td><p>_point_selection</p></td>
</tr>
<tr class="row-even"><td><p>_processRange</p></td>
<td><p>_process_range</p></td>
</tr>
<tr class="row-odd"><td><p>_processRangeRead</p></td>
<td><p>_process_range_read</p></td>
</tr>
<tr class="row-even"><td><p>_pythonIdRE</p></td>
<td><p>_python_id_re</p></td>
</tr>
<tr class="row-odd"><td><p>_reIndex</p></td>
<td><p>_reindex</p></td>
</tr>
<tr class="row-even"><td><p>_readArray</p></td>
<td><p>_read_array</p></td>
</tr>
<tr class="row-odd"><td><p>_readCoordinates</p></td>
<td><p>_read_coordinates</p></td>
</tr>
<tr class="row-even"><td><p>_readCoords</p></td>
<td><p>_read_coords</p></td>
</tr>
<tr class="row-odd"><td><p>_readIndexSlice</p></td>
<td><p>_read_index_slice</p></td>
</tr>
<tr class="row-even"><td><p>_readSelection</p></td>
<td><p>_read_selection</p></td>
</tr>
<tr class="row-odd"><td><p>_readSlice</p></td>
<td><p>_read_slice</p></td>
</tr>
<tr class="row-even"><td><p>_readSortedSlice</p></td>
<td><p>_read_sorted_slice</p></td>
</tr>
<tr class="row-odd"><td><p>_refNode</p></td>
<td><p>_refnode</p></td>
</tr>
<tr class="row-even"><td><p>_requiredExprVars</p></td>
<td><p>_required_expr_vars</p></td>
</tr>
<tr class="row-odd"><td><p>_reservedIdRE</p></td>
<td><p>_reserved_id_re</p></td>
</tr>
<tr class="row-even"><td><p>_reviveNode</p></td>
<td><p>_revivenode</p></td>
</tr>
<tr class="row-odd"><td><p>_saveBufferedRows</p></td>
<td><p>_save_buffered_rows</p></td>
</tr>
<tr class="row-even"><td><p>_searchBin</p></td>
<td><p>_search_bin</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_b</p></td>
<td><p>_search_bin_na_b</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_d</p></td>
<td><p>_search_bin_na_d</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_e</p></td>
<td><p>_search_bin_na_e</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_f</p></td>
<td><p>_search_bin_na_f</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_g</p></td>
<td><p>_search_bin_na_g</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_i</p></td>
<td><p>_search_bin_na_i</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_ll</p></td>
<td><p>_search_bin_na_ll</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_s</p></td>
<td><p>_search_bin_na_s</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_ub</p></td>
<td><p>_search_bin_na_ub</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_ui</p></td>
<td><p>_search_bin_na_ui</p></td>
</tr>
<tr class="row-odd"><td><p>_searchBinNA_ull</p></td>
<td><p>_search_bin_na_ull</p></td>
</tr>
<tr class="row-even"><td><p>_searchBinNA_us</p></td>
<td><p>_search_bin_na_us</p></td>
</tr>
<tr class="row-odd"><td><p>_setAttributes</p></td>
<td><p>_set_attributes</p></td>
</tr>
<tr class="row-even"><td><p>_setColumnIndexing</p></td>
<td><p>_set_column_indexing</p></td>
</tr>
<tr class="row-odd"><td><p>_shadowName</p></td>
<td><p>_shadow_name</p></td>
</tr>
<tr class="row-even"><td><p>_shadowParent</p></td>
<td><p>_shadow_parent</p></td>
</tr>
<tr class="row-odd"><td><p>_shadowPath</p></td>
<td><p>_shadow_path</p></td>
</tr>
<tr class="row-even"><td><p>_sizeToShape</p></td>
<td><p>_size_to_shape</p></td>
</tr>
<tr class="row-odd"><td><p>_tableColumnPathnameOfIndex</p></td>
<td><p>_table_column_pathname_of_index</p></td>
</tr>
<tr class="row-even"><td><p>_tableFile</p></td>
<td><p>_table_file</p></td>
</tr>
<tr class="row-odd"><td><p>_tablePath</p></td>
<td><p>_table_path</p></td>
</tr>
<tr class="row-even"><td><p>_table__autoIndex</p></td>
<td><p>_table__autoindex</p></td>
</tr>
<tr class="row-odd"><td><p>_table__getautoIndex</p></td>
<td><p>_table__getautoindex</p></td>
</tr>
<tr class="row-even"><td><p>_table__setautoIndex</p></td>
<td><p>_table__setautoindex</p></td>
</tr>
<tr class="row-odd"><td><p>_table__whereIndexed</p></td>
<td><p>_table__where_indexed</p></td>
</tr>
<tr class="row-even"><td><p>_transGroupName</p></td>
<td><p>_trans_group_name</p></td>
</tr>
<tr class="row-odd"><td><p>_transGroupParent</p></td>
<td><p>_trans_group_parent</p></td>
</tr>
<tr class="row-even"><td><p>_transGroupPath</p></td>
<td><p>_trans_group_path</p></td>
</tr>
<tr class="row-odd"><td><p>_transName</p></td>
<td><p>_trans_name</p></td>
</tr>
<tr class="row-even"><td><p>_transParent</p></td>
<td><p>_trans_parent</p></td>
</tr>
<tr class="row-odd"><td><p>_transPath</p></td>
<td><p>_trans_path</p></td>
</tr>
<tr class="row-even"><td><p>_transVersion</p></td>
<td><p>_trans_version</p></td>
</tr>
<tr class="row-odd"><td><p>_unrefNode</p></td>
<td><p>_unrefnode</p></td>
</tr>
<tr class="row-even"><td><p>_updateNodeLocations</p></td>
<td><p>_update_node_locations</p></td>
</tr>
<tr class="row-odd"><td><p>_useIndex</p></td>
<td><p>_use_index</p></td>
</tr>
<tr class="row-even"><td><p>_vShape</p></td>
<td><p>_vshape</p></td>
</tr>
<tr class="row-odd"><td><p>_vType</p></td>
<td><p>_vtype</p></td>
</tr>
<tr class="row-even"><td><p>_v__nodeFile</p></td>
<td><p>_v__nodefile</p></td>
</tr>
<tr class="row-odd"><td><p>_v__nodePath</p></td>
<td><p>_v__nodepath</p></td>
</tr>
<tr class="row-even"><td><p>_v_colObjects</p></td>
<td><p>_v_colobjects</p></td>
</tr>
<tr class="row-odd"><td><p>_v_maxGroupWidth</p></td>
<td><p>_v_max_group_width</p></td>
</tr>
<tr class="row-even"><td><p>_v_maxTreeDepth</p></td>
<td><p>_v_maxtreedepth</p></td>
</tr>
<tr class="row-odd"><td><p>_v_nestedDescr</p></td>
<td><p>_v_nested_descr</p></td>
</tr>
<tr class="row-even"><td><p>_v_nestedFormats</p></td>
<td><p>_v_nested_formats</p></td>
</tr>
<tr class="row-odd"><td><p>_v_nestedNames</p></td>
<td><p>_v_nested_names</p></td>
</tr>
<tr class="row-even"><td><p>_v_objectID</p></td>
<td><p>_v_objectid</p></td>
</tr>
<tr class="row-odd"><td><p>_whereCondition</p></td>
<td><p>_where_condition</p></td>
</tr>
<tr class="row-even"><td><p>_writeCoords</p></td>
<td><p>_write_coords</p></td>
</tr>
<tr class="row-odd"><td><p>_writeSelection</p></td>
<td><p>_write_selection</p></td>
</tr>
<tr class="row-even"><td><p>_writeSlice</p></td>
<td><p>_write_slice</p></td>
</tr>
<tr class="row-odd"><td><p>appendLastRow</p></td>
<td><p>append_last_row</p></td>
</tr>
<tr class="row-even"><td><p>attrFromShadow</p></td>
<td><p>attr_from_shadow</p></td>
</tr>
<tr class="row-odd"><td><p>attrToShadow</p></td>
<td><p>attr_to_shadow</p></td>
</tr>
<tr class="row-even"><td><p>autoIndex</p></td>
<td><p>autoindex</p></td>
</tr>
<tr class="row-odd"><td><p>bufcoordsData</p></td>
<td><p>bufcoords_data</p></td>
</tr>
<tr class="row-even"><td><p>calcChunksize</p></td>
<td><p>calc_chunksize</p></td>
</tr>
<tr class="row-odd"><td><p>checkFileAccess</p></td>
<td><p>check_file_access</p></td>
</tr>
<tr class="row-even"><td><p>checkNameValidity</p></td>
<td><p>check_name_validity</p></td>
</tr>
<tr class="row-odd"><td><p>childName</p></td>
<td><p>childname</p></td>
</tr>