pip install fails on M3

[balewski]

Hi, can help me with installing mthree inside podman on MacOS Sonoma?
This is my Dockeckerfile

FROM ubuntu:24.04

# Set non-interactive mode for apt-get
ARG DEBIAN_FRONTEND=noninteractive
ENV TZ=America/Los_Angeles

RUN echo "1a-AAAAAAAAAAAAAAAAAAAAAAAAAAAAA OS update" && \
    apt-get update && \
    apt-get install -y locales autoconf automake gcc g++ make vim wget ssh openssh-server sudo git emacs aptitude build-essential xterm python3-pip python3-tk python3-scipy python3-dev iputils-ping net-tools screen feh hdf5-tools python3-bitstring plocate graphviz tzdata x11-apps python3-venv && \
    apt-get clean

# Create a virtual environment for Python packages to avoid the externally managed environment issue
RUN python3 -m venv /opt/venv

# Activate the virtual environment
ENV PATH="/opt/venv/bin:$PATH"

RUN /opt/venv/bin/pip install numpy
RUN   /opt/venv/bin/pip install mthree 

The image is build with command:
podman build -f aa -t balewski/junk:p2 .
The crash is:

aarch64-linux-gnu-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-aarch64-cpython-312/mthree/hamming.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/mthree/hamming.cpython-312-aarch64-linux-gnu.so
      building 'mthree.matrix' extension
      aarch64-linux-gnu-g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/tmp/pip-build-env-99lc0k15/overlay/lib/python3.12/site-packages/numpy/_core/include -I/opt/venv/include -I/usr/include/python3.12 -c mthree/matrix.cpp -o build/temp.linux-aarch64-cpython-312/mthree/matrix.o -O3 -std=c++17 -DNPY_NO_DEPRECATED_API=NPY_1_23_API_VERSION
      mthree/matrix.cpp:1292:10: fatal error: src/distance.h: No such file or directory
       1292 | #include "src/distance.h"
            |          ^~~~~~~~~~~~~~~~
      compilation terminated.
      error: command '/usr/bin/aarch64-linux-gnu-g++' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for mthree
Failed to build mthree
ERROR: Could not build wheels for mthree, which is required to install pyproject.toml-based projects
Error: building at STEP "RUN /opt/venv/bin/pip install mthree": while running runtime: exit status 1

Thanks
Jan

[nonhermitian]

I think the header files need to be added to the manifest