diff --git a/SInCohMap_openEO_Sentinel2.ipynb b/SInCohMap_openEO_Sentinel2.ipynb
index 828b63c..e132d74 100644
--- a/SInCohMap_openEO_Sentinel2.ipynb
+++ b/SInCohMap_openEO_Sentinel2.ipynb
@@ -32,7 +32,20 @@
"- Common use cases for optical data:\n",
" - Create and apply a cloud mask\n",
" - Create a cloud free median composite\n",
- " - Mask out the clouds and compute the monthly mean NDVI"
+ " - Mask out the clouds and compute the monthly mean NDVI\n",
+ " \n",
+ "## FAQ:\n",
+ "**Q: I receive a 403 error, what does it mean?**\n",
+ "\n",
+ "A: If you get a 403 error, it usually means that the connection with the openEO back-end dropped. Please re run\n",
+ "\n",
+ "`conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")`\n",
+ "\n",
+ "and re run you code from `load_collection` onwards.\n",
+ "\n",
+ "**Q: I receive a 500 error, what does it mean?**\n",
+ "\n",
+ "A: It is a server error: something went wrong processing your request. Please check carefully that the area and time range you are requesting are available in the datacube (you can use `conn.describe_collection('COLLECTION_NAME')`) Currently the error logs are not passed if you run your request as a synchronous call (i.e. using `.download()`). If you run you process as a batch job you will get a more informative error message."
]
},
{
diff --git a/SInCohMap_openEO_examples.ipynb b/SInCohMap_openEO_examples.ipynb
index 1c21e69..b37a9b6 100644
--- a/SInCohMap_openEO_examples.ipynb
+++ b/SInCohMap_openEO_examples.ipynb
@@ -25,16 +25,18 @@
"\n",
"Getting started guide for openEO with python: https://openeo.org/documentation/1.0/python/\n",
"\n",
- "## Topics:\n",
- "- Login to Eurac's openEO backend containing the SInCohMap datacubes\n",
- "- Discover the data sets and processes\n",
- "- Access and process data via openEO processes\n",
- "- Common use cases for radar data:\n",
- " - Compute the intensity over the area of interest with different Multi Look sizes in SAR and geocoded domain.\n",
- " - Geocode the obtained values.\n",
- " - Compute the coherence for a given temporal baseline.\n",
- "- Common use cases for optical data:\n",
- " - Mask out the clouds and compute the weekly mean NDVI"
+ "## FAQ:\n",
+ "**Q: I receive a 403 error, what does it mean?**\n",
+ "\n",
+ "A: If you get a 403 error, it usually means that the connection with the openEO back-end dropped. Please re run\n",
+ "\n",
+ "`conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")`\n",
+ "\n",
+ "and re run you code from `load_collection` onwards.\n",
+ "\n",
+ "**Q: I receive a 500 error, what does it mean?**\n",
+ "\n",
+ "A: It is a server error: something went wrong processing your request. Please check carefully that the area and time range you are requesting are available in the datacube (you can use `conn.describe_collection('COLLECTION_NAME')`) Currently the error logs are not passed if you run your request as a synchronous call (i.e. using `.download()`). If you run you process as a batch job you will get a more informative error message."
]
},
{
@@ -47,7 +49,7 @@
},
{
"cell_type": "code",
- "execution_count": 1,
+ "execution_count": 3,
"id": "0205484c-3eff-4825-bdae-78357b775897",
"metadata": {
"scrolled": true
@@ -16033,7 +16035,7 @@
},
{
"cell_type": "code",
- "execution_count": 175,
+ "execution_count": 8,
"id": "a4fa0ed5-6678-4ca7-9442-c8521cfa0c90",
"metadata": {
"scrolled": true
@@ -24483,18 +24485,21 @@
"id": "a1a06e33-674d-4890-a3d9-be0d06c54ceb",
"metadata": {},
"source": [
+ "\n",
"### Load the datacube"
]
},
{
"cell_type": "code",
- "execution_count": 71,
+ "execution_count": null,
"id": "d0775a26-949c-4210-b737-27786a8490f1",
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
+ "conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")\n",
+ "\n",
"collection = 'SAR2Cube_SInCohMap_S1_L0_147_ASC_DONYANA'\n",
"temporal_extent = [\"2018-06-01T00:00:00.000Z\", \"2018-06-30T00:00:00.000Z\"]\n",
"\n",
@@ -24697,24 +24702,6 @@
"Load the datacube"
]
},
- {
- "cell_type": "code",
- "execution_count": 134,
- "id": "912de89d-5e9a-4068-a75a-575a929f3529",
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "Authenticated using refresh token.\n"
- ]
- }
- ],
- "source": [
- "conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")"
- ]
- },
{
"cell_type": "code",
"execution_count": 112,
@@ -24724,9 +24711,11 @@
},
"outputs": [],
"source": [
+ "conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")\n",
+ "\n",
"collection = 'SAR2Cube_SInCohMap_S1_L0_147_ASC_DONYANA'\n",
"# collection = 'SAR2Cube_SInCohMap_S1_L0_154_DSC_DONYANA'\n",
- "# spatial_extent = {'west':bbox[0],'east':bbox[2],'south':bbox[1],'north':bbox[3]}\n",
+ "spatial_extent = {'west':bbox[0],'east':bbox[2],'south':bbox[1],'north':bbox[3]}\n",
"temporal_extent = [\"2018-06-01T00:00:00.000Z\", \"2018-06-20T00:00:00.000Z\"]\n",
"\n",
"S1_slant_range = conn.load_collection(collection,spatial_extent=spatial_extent,temporal_extent=temporal_extent)"
@@ -24991,8 +24980,10 @@
"metadata": {},
"outputs": [],
"source": [
- "collection = 'SAR2Cube_L0_117_ASC_ST_2016_2020_IFG_LIA_DEM'\n",
- "# spatial_extent = {'west':bbox[0],'east':bbox[2],'south':bbox[1],'north':bbox[3]}\n",
+ "conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")\n",
+ "\n",
+ "collection = 'SAR2Cube_SInCohMap_S1_L0_147_ASC_DONYANA'\n",
+ "spatial_extent = {'west':bbox[0],'east':bbox[2],'south':bbox[1],'north':bbox[3]}\n",
"temporal_extent = [\"2018-01-01T00:00:00.000Z\", \"2019-01-01T00:00:00.000Z\"]\n",
"\n",
"S1_slant_range = conn.load_collection(collection,spatial_extent=spatial_extent,temporal_extent=temporal_extent)\n",
@@ -25023,7 +25014,7 @@
"\n",
"S1_INT_ML_MEAN = S1_INT_ML.reduce_dimension(reducer=mean, dimension='DATE')\n",
"\n",
- "args_geocoding = {'resolution':20,'crs':32632}\n",
+ "args_geocoding = {'resolution':20,'crs':32629}\n",
"S1_INT_ML_GEOCODED = S1_INT_ML_MEAN.process(\"geocode\",args_geocoding, data=S1_INT_ML_MEAN)\n",
"\n",
"S1_INT_ML_GEOCODED_GTIFF = S1_INT_ML_GEOCODED.save_result(format='GTiff')"
@@ -25062,7 +25053,6 @@
"metadata": {},
"outputs": [],
"source": [
- "job_id = \"8bd3844b-2f2e-4aa6-96bc-2841e98315fc\"\n",
"job = conn.job(job_id)"
]
},
@@ -39081,6 +39071,69 @@
"# Coherence computation on-the-fly"
]
},
+ {
+ "cell_type": "markdown",
+ "id": "7d2cef35-a659-40a0-98d6-f7da59ae5886",
+ "metadata": {},
+ "source": [
+ "## Select the AOI\n",
+ "Use the rectangle selection tool to select the area of interest"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 33,
+ "id": "910c431a-6e89-48bc-8f1a-5cfe50dad84c",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "application/vnd.jupyter.widget-view+json": {
+ "model_id": "21197eec1bd14ee98ab9fbcb37e6eae6",
+ "version_major": 2,
+ "version_minor": 0
+ },
+ "text/plain": [
+ "Map(center=[37.2, -6.2], controls=(ZoomControl(options=['position', 'zoom_in_text', 'zoom_in_title', 'zoom_out…"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "center = [37.2, -6.2]\n",
+ "zoom = 9\n",
+ "\n",
+ "eoMap = openeoMap(center,zoom)\n",
+ "eoMap.map"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 34,
+ "id": "0d486a20-0276-460a-86e9-70e16e525e2f",
+ "metadata": {
+ "scrolled": true
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Coordinates selected from map: \n",
+ " west -6.107025 \n",
+ " east -6.05175 \n",
+ " south 37.121392 \n",
+ " north 37.144658\n"
+ ]
+ }
+ ],
+ "source": [
+ "bbox = eoMap.getBbox()\n",
+ "print(\"Coordinates selected from map:\",'\\n west',bbox[0],'\\n east',bbox[2],'\\n south',bbox[1],'\\n north',bbox[3])"
+ ]
+ },
{
"cell_type": "markdown",
"id": "pharmaceutical-success",
@@ -39091,14 +39144,24 @@
},
{
"cell_type": "code",
- "execution_count": 123,
+ "execution_count": 35,
"id": "accompanied-setting",
"metadata": {
"scrolled": true
},
- "outputs": [],
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Authenticated using refresh token.\n"
+ ]
+ }
+ ],
"source": [
- "collection = 'SAR2Cube_L0_117_ASC_ST_2016_2020_IFG_LIA_DEM'\n",
+ "conn = openeo.connect(openeoHost).authenticate_oidc(client_id=\"openEO_PKCE\")\n",
+ "\n",
+ "collection = 'SAR2Cube_SInCohMap_S1_L0_147_ASC_DONYANA'\n",
"spatial_extent = {'west':bbox[0],'east':bbox[2],'south':bbox[1],'north':bbox[3]}\n",
"temporal_extent = [\"2018-06-05T00:00:00.000Z\", \"2018-07-05T00:00:00.000Z\"]\n",
"\n",
@@ -39115,7 +39178,7 @@
},
{
"cell_type": "code",
- "execution_count": 124,
+ "execution_count": 36,
"id": "casual-husband",
"metadata": {},
"outputs": [],
@@ -39126,7 +39189,7 @@
},
{
"cell_type": "code",
- "execution_count": 125,
+ "execution_count": 37,
"id": "indian-basket",
"metadata": {},
"outputs": [],
@@ -39137,7 +39200,7 @@
},
{
"cell_type": "code",
- "execution_count": 126,
+ "execution_count": 38,
"id": "phantom-combination",
"metadata": {},
"outputs": [],
@@ -39148,7 +39211,7 @@
},
{
"cell_type": "code",
- "execution_count": 127,
+ "execution_count": 39,
"id": "cooked-entity",
"metadata": {},
"outputs": [],
@@ -39184,7 +39247,7 @@
},
{
"cell_type": "code",
- "execution_count": 128,
+ "execution_count": 40,
"id": "similar-mathematics",
"metadata": {
"scrolled": true
@@ -39196,7 +39259,7 @@
},
{
"cell_type": "code",
- "execution_count": 129,
+ "execution_count": 41,
"id": "tutorial-package",
"metadata": {
"scrolled": true
@@ -39217,7 +39280,7 @@
},
{
"cell_type": "code",
- "execution_count": 130,
+ "execution_count": 42,
"id": "phantom-lesbian",
"metadata": {
"scrolled": true
@@ -39229,37 +39292,114 @@
},
{
"cell_type": "code",
- "execution_count": 131,
+ "execution_count": 44,
"id": "quality-programming",
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
- "args_geocoding = {'resolution':20,'crs':32632}\n",
- "S1_COH_GEOCODED = S1_COH.process(\"geocode\",args_geocoding, data=S1_COH)"
+ "args_geocoding = {'resolution':60,'crs':32629}\n",
+ "S1_COH_GEOCODED = S1_COH.process(\"geocode\",args_geocoding, data=S1_COH)\n",
+ "S1_COH_GEOCODED_NC = S1_COH_GEOCODED.save_result(format='netCDF')"
]
},
{
"cell_type": "code",
- "execution_count": 132,
- "id": "daily-hometown",
- "metadata": {
- "scrolled": true
- },
+ "execution_count": 45,
+ "id": "ef7ba6d5-fa19-4213-894a-c43c26e5f500",
+ "metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
- "CPU times: user 305 ms, sys: 68.7 ms, total: 373 ms\n",
- "Wall time: 38.2 s\n"
+ "Batch job created with id: 30f23049-788e-4cc1-8ecc-6da69db4f9c5\n"
]
}
],
"source": [
- "%%time\n",
- "S1_COH_GEOCODED.download(\"./data/S1_COH_6DAYS_GEOCODED.nc\",format='netCDF')"
+ "job = conn.create_job(S1_COH_GEOCODED_NC,title=\"Donyana_6D_coherence\")\n",
+ "job_id = job.job_id\n",
+ "if job_id:\n",
+ " print(\"Batch job created with id: \",job_id)\n",
+ " job.start_job()\n",
+ "else:\n",
+ " print(\"Error! Job ID is None\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 46,
+ "id": "dfa2ec8a-5636-4ba8-843a-0303a18f7baf",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "job = conn.job(job_id)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 47,
+ "id": "4bca73dd-1b12-46c4-b409-cfa9619812ec",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ " \n",
+ " \n",
+ " \n",
+ " \n",
+ " "
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "execution_count": 47,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "job"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 48,
+ "id": "d3739f24-4b15-4f9b-9cb7-be0ffd82a3cf",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "[PosixPath('job_result/process.json'), PosixPath('job_result/result.nc')]"
+ ]
+ },
+ "execution_count": 48,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "result = job.get_results()\n",
+ "result.download_files(\"./data/\")"
]
},
{