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Error in importing pycisTopic.pseudobulk_peak_calling #200

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AdotaLover opened this issue Feb 13, 2025 · 2 comments
Open

Error in importing pycisTopic.pseudobulk_peak_calling #200

AdotaLover opened this issue Feb 13, 2025 · 2 comments

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@AdotaLover
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AdotaLover commented Feb 13, 2025

hi,i'm new to multiome and thank you for your tools!But i met an error

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
Cell In[43], line 1
----> 1 from pycisTopic.pseudobulk_peak_calling import export_pseudobulk
      2 bw_paths, bed_paths = export_pseudobulk(input_data = cell_data,
      3                  variable = 'celltype',                                                                     # variable by which to generate pseubulk profiles, in this case we want pseudobulks per celltype
      4                  sample_id_col = 'sample_id',
   (...)
     12                  _temp_dir = os.path.join(tmp_dir, 'ray_spill'),
     13                  split_pattern = '-')

ModuleNotFoundError: No module named 'pycisTopic.pseudobulk_peak_calling'

my version is '2.0a0' and my python version is 3.11.0,thank you!

@AdotaLover
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But i import pycisTopic successfully

@ghuls
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ghuls commented Feb 14, 2025

Make sure you have installed pycisTopic and that your current directory is not the parent dir of this cloned repo (as python will look in the local dir first for a package.

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