From f0da1cd67677801d12ee8a264893ca5f5cd7ab1e Mon Sep 17 00:00:00 2001 From: Ward Langeraert Date: Mon, 4 Nov 2024 08:35:18 +0100 Subject: [PATCH 1/3] add origin story --- README.Rmd | 4 +++- README.md | 8 ++++++-- 2 files changed, 9 insertions(+), 3 deletions(-) diff --git a/README.Rmd b/README.Rmd index 37b7fc6..de9d806 100644 --- a/README.Rmd +++ b/README.Rmd @@ -40,9 +40,11 @@ You can install the development version from [GitHub](https://github.com/) with: remotes::install_github("b-cubed-eu/gcube") ``` -## Package name rationale +## Package name rationale and origin story The name **gcube** stands for 'generate cube' since it can be used to generate biodiversity data cubes from minimal input. +It was first developed during the hackathon 'Hacking Biodiversity Data Cubes for Policy', where it won the first price in the category 'Visualization and training'. +You can read the full story here: ## Example diff --git a/README.md b/README.md index 8d8568b..def473c 100644 --- a/README.md +++ b/README.md @@ -41,10 +41,14 @@ You can install the development version from remotes::install_github("b-cubed-eu/gcube") ``` -## Package name rationale +## Package name rationale and origin story The name **gcube** stands for ‘generate cube’ since it can be used to -generate biodiversity data cubes from minimal input. +generate biodiversity data cubes from minimal input. It was first +developed during the hackathon ‘Hacking Biodiversity Data Cubes for +Policy’, where it won the first price in the category ‘Visualization and +training’. You can read the full story here: + ## Example From b0cd86ebbb2fac24571eef1579c0b9b59208ac49 Mon Sep 17 00:00:00 2001 From: Ward Langeraert Date: Mon, 4 Nov 2024 08:35:28 +0100 Subject: [PATCH 2/3] update package version --- .zenodo.json | 2 +- CITATION.cff | 2 +- DESCRIPTION | 2 +- NEWS.md | 4 ++ codemeta.json | 150 +++++++------------------------------------------- inst/CITATION | 4 +- 6 files changed, 28 insertions(+), 136 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 0af4a5e..501b5bd 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -1,6 +1,6 @@ { "title": "gcube: Simulating Biodiversity Data Cubes", - "version": "0.4.0", + "version": "1.0.0", "license": "MIT", "upload_type": "software", "description": "

Simulation framework for biodiversity data cubes.<\/p>", diff --git a/CITATION.cff b/CITATION.cff index f59ae65..f6eb99d 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -25,4 +25,4 @@ abstract: "Simulation framework for biodiversity data cubes." identifiers: - type: url value: https://b-cubed-eu.github.io/gcube/ -version: 0.4.0 +version: 1.0.0 diff --git a/DESCRIPTION b/DESCRIPTION index d101f80..d3021b8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: gcube Title: Simulating Biodiversity Data Cubes -Version: 0.4.0 +Version: 1.0.0 Authors@R: c( person("Ward", "Langeraert", , "ward.langeraert@inbo.be", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-5900-8109", affiliation = "Research Institute for Nature and Forest (INBO)")), diff --git a/NEWS.md b/NEWS.md index e53d1bb..503f172 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# gcube 1.0.0 + +* Add package origin story. + # gcube 0.4.0 * Consolidate documentation across all functions, README, and vignettes. diff --git a/codemeta.json b/codemeta.json index 3f4a34e..4a16ad8 100644 --- a/codemeta.json +++ b/codemeta.json @@ -8,7 +8,7 @@ "codeRepository": "https://github.com/b-cubed-eu/gcube", "issueTracker": "https://github.com/b-cubed-eu/gcube/issues", "license": "https://spdx.org/licenses/MIT", - "version": "0.4.0", + "version": "1.0.0", "programmingLanguage": { "@type": "ComputerLanguage", "name": "R", @@ -130,113 +130,50 @@ { "@type": "SoftwareApplication", "identifier": "ggExtra", - "name": "ggExtra", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=ggExtra" + "name": "ggExtra" }, { "@type": "SoftwareApplication", "identifier": "ggplot2", - "name": "ggplot2", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=ggplot2" + "name": "ggplot2" }, { "@type": "SoftwareApplication", "identifier": "knitr", - "name": "knitr", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=knitr" + "name": "knitr" }, { "@type": "SoftwareApplication", "identifier": "rmarkdown", - "name": "rmarkdown", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=rmarkdown" + "name": "rmarkdown" }, { "@type": "SoftwareApplication", "identifier": "testthat", "name": "testthat", - "version": ">= 3.0.0", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=testthat" + "version": ">= 3.0.0" }, { "@type": "SoftwareApplication", "identifier": "tidyterra", - "name": "tidyterra", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=tidyterra" + "name": "tidyterra" } ], "softwareRequirements": { "1": { "@type": "SoftwareApplication", "identifier": "assertthat", - "name": "assertthat", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=assertthat" + "name": "assertthat" }, "2": { "@type": "SoftwareApplication", "identifier": "dplyr", - "name": "dplyr", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=dplyr" + "name": "dplyr" }, "3": { "@type": "SoftwareApplication", "identifier": "gstat", - "name": "gstat", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=gstat" + "name": "gstat" }, "4": { "@type": "SoftwareApplication", @@ -246,50 +183,22 @@ "5": { "@type": "SoftwareApplication", "identifier": "mnormt", - "name": "mnormt", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=mnormt" + "name": "mnormt" }, "6": { "@type": "SoftwareApplication", "identifier": "purrr", - "name": "purrr", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=purrr" + "name": "purrr" }, "7": { "@type": "SoftwareApplication", "identifier": "rlang", - "name": "rlang", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=rlang" + "name": "rlang" }, "8": { "@type": "SoftwareApplication", "identifier": "sf", - "name": "sf", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=sf" + "name": "sf" }, "9": { "@type": "SoftwareApplication", @@ -299,42 +208,21 @@ "10": { "@type": "SoftwareApplication", "identifier": "terra", - "name": "terra", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=terra" + "name": "terra" }, "11": { "@type": "SoftwareApplication", "identifier": "tidyr", - "name": "tidyr", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=tidyr" + "name": "tidyr" }, "12": { "@type": "SoftwareApplication", "identifier": "vegan", - "name": "vegan", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=vegan" + "name": "vegan" }, "SystemRequirements": null }, - "fileSize": "555.681KB", + "fileSize": "557.326KB", "citation": [ { "@type": "SoftwareSourceCode", @@ -346,7 +234,7 @@ "familyName": "Langeraert" } }, - "name": "gcube: Simulating Biodiversity Data Cubes. Version 0.4.0", + "name": "gcube: Simulating Biodiversity Data Cubes. Version 1.0.0", "url": "https://b-cubed-eu.github.io/gcube/" } ], diff --git a/inst/CITATION b/inst/CITATION index cfdcf06..b023afd 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -2,12 +2,12 @@ citHeader("To cite `gcube` in publications please use:") # begin checklist entry bibentry( bibtype = "Manual", - title = "gcube: Simulating Biodiversity Data Cubes. Version 0.4.0", + title = "gcube: Simulating Biodiversity Data Cubes. Version 1.0.0", author = c( author = c(person(given = "Ward", family = "Langeraert"))), year = 2024, url = "https://b-cubed-eu.github.io/gcube/", abstract = "Simulation framework for biodiversity data cubes.", - textVersion = "Langeraert, Ward (2024) gcube: Simulating Biodiversity Data Cubes. Version 0.4.0. https://b-cubed-eu.github.io/gcube/", + textVersion = "Langeraert, Ward (2024) gcube: Simulating Biodiversity Data Cubes. Version 1.0.0. https://b-cubed-eu.github.io/gcube/", keywords = "simulation; data cubes; B-Cubed; biodiversity; Monte-Carlo", ) # end checklist entry From 61a073595400399f5d3e8ae18196136476c2d896 Mon Sep 17 00:00:00 2001 From: Ward Langeraert Date: Mon, 4 Nov 2024 14:05:16 +0100 Subject: [PATCH 3/3] use double quotes --- README.Rmd | 4 ++-- README.md | 8 ++++---- inst/en_gb.dic | 2 -- 3 files changed, 6 insertions(+), 8 deletions(-) diff --git a/README.Rmd b/README.Rmd index de9d806..e047d2d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -42,8 +42,8 @@ remotes::install_github("b-cubed-eu/gcube") ## Package name rationale and origin story -The name **gcube** stands for 'generate cube' since it can be used to generate biodiversity data cubes from minimal input. -It was first developed during the hackathon 'Hacking Biodiversity Data Cubes for Policy', where it won the first price in the category 'Visualization and training'. +The name **gcube** stands for "generate cube" since it can be used to generate biodiversity data cubes from minimal input. +It was first developed during the hackathon "Hacking Biodiversity Data Cubes for Policy", where it won the first price in the category "Visualization and training". You can read the full story here: ## Example diff --git a/README.md b/README.md index def473c..4c228aa 100644 --- a/README.md +++ b/README.md @@ -43,11 +43,11 @@ remotes::install_github("b-cubed-eu/gcube") ## Package name rationale and origin story -The name **gcube** stands for ‘generate cube’ since it can be used to +The name **gcube** stands for “generate cube” since it can be used to generate biodiversity data cubes from minimal input. It was first -developed during the hackathon ‘Hacking Biodiversity Data Cubes for -Policy’, where it won the first price in the category ‘Visualization and -training’. You can read the full story here: +developed during the hackathon “Hacking Biodiversity Data Cubes for +Policy”, where it won the first price in the category “Visualization and +training”. You can read the full story here: ## Example diff --git a/inst/en_gb.dic b/inst/en_gb.dic index d390749..5bb2593 100644 --- a/inst/en_gb.dic +++ b/inst/en_gb.dic @@ -2,8 +2,6 @@ CMD SpatRaster codecov -cube’ -cube’ det etc prob