v4.2.0

What's Changed

• Update biolink-model.yaml by @mbrush in #1481
• Add klat by @kevinschaper in #1487
• infores catalog has now moved to its own repository.
• onset is reintroduced to ONLY support HP disease-> phenotype annotations, not "treats" associations.
• Knowledge level agent type new dir by @sierra-moxon in #1470
• check links in doc by @sierra-moxon in #1465
• Fix category type for pydantic generated models, remove pydantic 1 generation by @sierra-moxon in #1468
• Update links and autogenerated artifacts in README.md by @deepakunni3 in #1476
• fix mislabeled ranges to domain by @sierra-moxon in #1475
• relaxed mappings for a couple of chemicals, made them mappings of Che… by @sierra-moxon in #1474
• remove skos:relatedMatch as an exact mapping to biolink relate… by @sierra-moxon in #1473
• fix order of prefixes for small molecule and chemical entity by @sierra-moxon in #1471
• Adds knowledge_level and agent_type as association slots, makes them required and sets a default value. by @kevinschaper
• Bump idna from 3.6 to 3.7 by @dependabot in #1488
• 4.2.0 by @sierra-moxon in #1489

Full Changelog: v4.2.0-rc.2...v4.2.0

v4.2.0-rc.2

What's Changed

• remove information resource catalog from biolink repository by @sierra-moxon in #1469
• support onset in HPO annotations for monarch, but restrict use of ons… by @sierra-moxon in #1478
• Support hpoa annotation format by @sierra-moxon in #1479

Full Changelog: v4.2.0-rc.1...v4.2.0-rc.2

v4.2.0-rc.1

What's Changed

• Knowledge level agent type new dir by @sierra-moxon in #1470
• check links in doc by @sierra-moxon in #1465
• Fix catagory type for pydantic generated models, remove pydantic 1 generation by @sierra-moxon in #1468
• Update links and autogenerated artifacts in README.md by @deepakunni3 in #1476
• fix mislabeled ranges to domain by @sierra-moxon in #1475
• relaxed mappings for a couple of chemicals, made them mappings of Che… by @sierra-moxon in #1474
• remove - skos:relatedMatch as an exact mapping to biolink relate… by @sierra-moxon in #1473
• move semmed administered_to and associated_with to their new respecti… by @sierra-moxon in #1472
• fix order of prefixes for small molecule and chemical entity by @sierra-moxon in #1471

Full Changelog: v4.1.6...v4.2.0-rc.1

v4.1.6

What's Changed

• remove commas from mixin predicate inverse by @sierra-moxon in #1463
• Remove rdfs:label slot_uri from in_taxon_label by @kevinschaper in #1464

Full Changelog: v4.1.5...v4.1.6

v4.1.5

What's Changed

• clean up spell config, extend contraindicated to include biological process, add mappings by @sierra-moxon in #1461
• Update README.md by @baig in #1449
• adding inverses for treats hierarchy not currently inversed by @sierra-moxon in #1460
  v4.1.3...v4.1.4

Full Changelog: v4.1.3...v4.1.5

v4.1.4

What's Changed

• Update README.md by @baig in #1449
• adding inverses for treats hierarchy not currently inversed by @sierra-moxon in #1460

New Contributors

• @baig made their first contribution in #1449

Full Changelog: v4.1.3...v4.1.4

v4.1.3

What's Changed

• (Remove explicit rdflib dependency by @kevinschaper in #1459

Full Changelog: v4.1.2...v4.1.3

v4.1.2

What's Changed

• Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #1446
• Add frequency quantifier mixin to disease to phenotypic feature association by @kevinschaper in #1451
• Exploring Agent/Service Provider infores updates Jan2024 by @colleenXu in #1450

Full Changelog: v4.1.1...v4.1.2

v4.1.1

What's Changed

• Add RO mapping for gene/condition relations by @cbizon in #1443
• fix whitespace issues by @gprice1129 in #1441
• Adding 'phenotypic feature to disease association' plus related mixins by @RichardBruskiewich in #1444
• Documentation bug fixes and adding more examples and visualizations to help with the treats migration by @sierra-moxon in #1445

New Contributors

• @gprice1129 made their first contribution in #1441

Full Changelog: v4.1.0...v4.1.1

v4.1.0

What's Changed

• ubergraph and sri-reference-kg/monarchinitiative updates by @EvanDietzMorris in #1428
• Add infores validation checks to PRs and makefile target by @sierra-moxon in #1434
• add canonical flag to superclass of by @sierra-moxon in #1433
• make subclass of an inverse of superclass of by @sierra-moxon in #1435
• make changes according to https://docs.google.com/spreadsheets/d/12SP… by @sierra-moxon in #1436
• Adds infores:aop-cam (Adverse Outcome Pathways Casual Activity Models) by @gaurav in #1437
• Treats viz test by @sierra-moxon in #1439
• "max predicate approach" for refactoring "treats" by @sierra-moxon in #1328
• Dec 2023 infores updates for Service Provider/BTE by @colleenXu in #1429
• add context at beginning, fix some awkward wording by @nlharris in #1438
• ready for release 4.1.0 by @sierra-moxon in #1440

Full Changelog: v4.0.0...v4.1.0