From f6ec4b3827ba109d77e66bc9c1573cb4707ff48b Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 09:30:12 -0500 Subject: [PATCH 01/13] rename eccode prefix to ec --- src/bioregistry/data/bioregistry.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index cae908fd8..10c0314d6 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -31012,7 +31012,7 @@ "pattern": "^\\d{7}$", "uri_format": "http://purl.obolibrary.org/obo/ECAO_$1" }, - "eccode": { + "ec": { "bartoc": { "description": "By the late 1950's it had become evident that the nomenclature of enzymology, in the absence of any guiding authority, in a period when the number of known enzymes was increasing rapidly, was getting out of hand. The naming of enzymes by individual workers had proved far from satisfactory in practice. In many cases the same enzymes became known by several different names, while conversely the same name was sometimes given to different enzymes. Many of the names conveyed little or no idea of the nature of the reactions catalysed, and similar names were sometimes given to enzymes of quite different types. To meet this situation, various attempts to bring order into the general nomenclature of enzymes, or into that of particular groups of enzymes, were made by individuals or small groups of specialists, but none of the resulting nomenclatures met with general approval. (...) The Enzyme List in the sixth edition (1992) contains 3540 entries, of which 178 record enzymes which are now transferred elsewhere in the list, and 166 have been deleted completely. Thus the number of enzymes actually listed is 3196, an increase of 29% on the 1984 edition.", "homepage": "https://www.abbexa.com/enzyme-commission-number", @@ -31179,6 +31179,7 @@ "prefix": "106" }, "pattern": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.[nB]\\d{1,3}|\\.-\\.-\\.-|\\.\\d{1,3}\\.-\\.-|\\.\\d{1,3}\\.\\d{1,3}\\.-)?$", + "preferred_prefix": "EC", "prefixcommons": { "description": "IntEnz is a freely available resource focused on enzyme nomenclature. IntEnz contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB) on the nomenclature and classification of enzyme-catalysed reactions.", "example": "17854", From 4a77f760e8d169bb8f85ee06aecbcf8c70e81767 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 09:31:14 -0500 Subject: [PATCH 02/13] Update link to use correct prefix in glossary --- docs/glossary.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/glossary.md b/docs/glossary.md index 8f9784483..52c24d474 100644 --- a/docs/glossary.md +++ b/docs/glossary.md @@ -30,7 +30,7 @@ number (e.g., Gene Ontology), and some are expansive (e.g., [NCI Thesaurus (NCIT)](https://bioregistry.io/efo)). Some resources are complete by definition (e.g., -[Enzyme Classification](https://bioregistry.io/eccode)), some resources are +[Enzyme Classification](https://bioregistry.io/ec)), some resources are complete but subject to change (e.g., HGNC), and some are always incomplete (e.g., PDB). From 4706aaf180445aea96369baed22225c4cb26918f Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 09:31:47 -0500 Subject: [PATCH 03/13] Update prefix in warnings --- docs/_data/warnings.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_data/warnings.yml b/docs/_data/warnings.yml index e57554668..225d5ca7b 100644 --- a/docs/_data/warnings.yml +++ b/docs/_data/warnings.yml @@ -121,7 +121,7 @@ wrong_patterns: homepage: https://www.enzyme-database.org/ miriam: ^\d+\.-\.-\.-|\d+\.\d+\.-\.-|\d+\.\d+\.\d+\.-|\d+\.\d+\.\d+\.(n)?\d+$ name: Enzyme Commission Code - prefix: eccode + prefix: ec - correct: ^\d{7}$ homepage: https://www.evidenceontology.org miriam: ECO:\d{7}$ From 342e97842c2bfc975e4db67bce87124b3b1ab230 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 16:58:00 -0500 Subject: [PATCH 04/13] Update README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 52ffbefd7..eb3ca0214 100644 --- a/README.md +++ b/README.md @@ -169,8 +169,8 @@ assert 'ncbitaxon' == normalize_prefix('taxonomy') assert 'pubchem.compound' == normalize_prefix('pubchem') # This works for prefixes that are often written many ways, like: -assert 'eccode' == normalize_prefix('ec-code') -assert 'eccode' == normalize_prefix('EC_CODE') +assert 'ec' == normalize_prefix('ec-code') +assert 'ec' == normalize_prefix('EC_CODE') # If a prefix is not registered, it gives back `None` assert normalize_prefix('not a real key') is None From 38a18e819d009a2963413ffdb25a6cdd8f2936a7 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 17:01:01 -0500 Subject: [PATCH 05/13] Update docstring for normalize_prefix() --- src/bioregistry/resolve.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/bioregistry/resolve.py b/src/bioregistry/resolve.py index 01005a58c..f05e1367e 100644 --- a/src/bioregistry/resolve.py +++ b/src/bioregistry/resolve.py @@ -948,8 +948,8 @@ def normalize_prefix(prefix: str, *, use_preferred: bool = False) -> str | None: This works for prefixes that are often written many ways, like: - >>> assert "eccode" == normalize_prefix("ec-code") - >>> assert "eccode" == normalize_prefix("EC_CODE") + >>> assert "ec" == normalize_prefix("ec-code") + >>> assert "ec" == normalize_prefix("EC_CODE") Get a "preferred" prefix: From e9c6bbed2b0f7620dc4c9c39319ca943c6e04952 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 17:01:52 -0500 Subject: [PATCH 06/13] Update instances of eccode in "provides" key --- src/bioregistry/data/bioregistry.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 10c0314d6..85c32332a 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -11108,7 +11108,7 @@ ], "uri_format": "http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1" }, - "provides": "eccode", + "provides": "ec", "publications": [ { "doi": "10.1016/j.jbiotec.2017.04.020", @@ -62021,7 +62021,7 @@ }, "name": "KEGG Enzyme", "part_of": "kegg", - "provides": "eccode" + "provides": "ec" }, "kegg.genes": { "biocontext": { @@ -103221,7 +103221,7 @@ ], "uri_format": "http://sabiork.h-its.org/index2.jsp?EC=$1" }, - "provides": "eccode", + "provides": "ec", "publications": [ { "pubmed": "17822389", From 3643f828f1a16e3bdfbabfd80063cf7c7e8c2ca0 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 17:03:32 -0500 Subject: [PATCH 07/13] Update access.html --- src/bioregistry/app/templates/meta/access.html | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/bioregistry/app/templates/meta/access.html b/src/bioregistry/app/templates/meta/access.html index 96a9d9ffe..e73eda6d8 100644 --- a/src/bioregistry/app/templates/meta/access.html +++ b/src/bioregistry/app/templates/meta/access.html @@ -76,8 +76,8 @@

Python Package Usage

assert 'pubchem.compound' == bioregistry.normalize_prefix('pubchem') # This works for prefixes that are often written many ways, like: -assert 'eccode' == bioregistry.normalize_prefix('ec-code') -assert 'eccode' == bioregistry.normalize_prefix('EC_CODE') +assert 'ec' == bioregistry.normalize_prefix('ec-code') +assert 'ec' == bioregistry.normalize_prefix('EC_CODE') # If a prefix is not registered, it gives back `None` assert bioregistry.normalize_prefix('not a real key') is None From 754aced225d5091c7a8367ec8ca7e50e93a4fdb4 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 17:08:56 -0500 Subject: [PATCH 08/13] Revert to eccode --- docs/_data/warnings.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_data/warnings.yml b/docs/_data/warnings.yml index 225d5ca7b..e57554668 100644 --- a/docs/_data/warnings.yml +++ b/docs/_data/warnings.yml @@ -121,7 +121,7 @@ wrong_patterns: homepage: https://www.enzyme-database.org/ miriam: ^\d+\.-\.-\.-|\d+\.\d+\.-\.-|\d+\.\d+\.\d+\.-|\d+\.\d+\.\d+\.(n)?\d+$ name: Enzyme Commission Code - prefix: ec + prefix: eccode - correct: ^\d{7}$ homepage: https://www.evidenceontology.org miriam: ECO:\d{7}$ From 8b0f8a80ceb404cdd956c4f150fc0a46f7064acc Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 17:09:21 -0500 Subject: [PATCH 09/13] Update tests --- tests/test_identifiers_org.py | 2 +- tests/test_resolve.py | 16 ++++++++-------- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/tests/test_identifiers_org.py b/tests/test_identifiers_org.py index 5f887bca9..14c382d24 100644 --- a/tests/test_identifiers_org.py +++ b/tests/test_identifiers_org.py @@ -36,7 +36,7 @@ def test_get_prefix(self): """Test getting identifiers.org prefixes.""" for prefix, miriam_prefix in [ ("ncbitaxon", "taxonomy"), - ("eccode", "ec-code"), + ("ec", "ec-code"), ]: with self.subTest(prefix=prefix): self.assertEqual(miriam_prefix, bioregistry.get_identifiers_org_prefix(prefix)) diff --git a/tests/test_resolve.py b/tests/test_resolve.py index d679859f6..2805bb87f 100644 --- a/tests/test_resolve.py +++ b/tests/test_resolve.py @@ -20,8 +20,8 @@ def test_resolve(self): ("ncbitaxon", "taxonomy"), ("scomp", "SCOMP"), ("sfam", "SFAM"), - ("eccode", "ec-code"), - ("eccode", "EC_CODE"), + ("ec", "ec-code"), + ("ec", "EC_CODE"), ("chembl.compound", "chembl.compound"), ("chembl.compound", "chemblcompound"), ("chembl", "chembl"), @@ -41,12 +41,12 @@ def test_get(self): def test_validate_true(self): """Test that validation returns true.""" tests = [ - ("eccode", "1"), - ("eccode", "1.1"), - ("eccode", "1.1.1"), - ("eccode", "1.1.1.1"), - ("eccode", "1.1.123.1"), - ("eccode", "1.1.1.123"), + ("ec", "1"), + ("ec", "1.1"), + ("ec", "1.1.1"), + ("ec", "1.1.1.1"), + ("ec", "1.1.123.1"), + ("ec", "1.1.1.123"), # Namespace in LUI: Standard rule for upper-casing ("chebi", "24867"), ("chebi", "CHEBI:1234"), From 5dd41e5bd811cdfb937d95cf6c1bb7b8c02ff6d3 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 19:34:41 -0500 Subject: [PATCH 10/13] Add eccode as synonym --- src/bioregistry/data/bioregistry.json | 181 +++++++++++++------------- 1 file changed, 91 insertions(+), 90 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 85c32332a..f746b6860 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -30922,96 +30922,6 @@ }, "pattern": "^E(S|D)i\\d+-\\w$" }, - "ecacc": { - "cellosaurus": { - "category": "Cell line collections (Providers)", - "homepage": "https://www.culturecollections.org.uk/about-us/ecacc/", - "name": "European Collection of Cell Cultures", - "prefix": "ECACC", - "uri_format": "https://www.culturecollections.org.uk/products/celllines/detail.jsp?refId=$1" - }, - "contributor": { - "email": "cthoyt@gmail.com", - "github": "cthoyt", - "name": "Charles Tapley Hoyt", - "orcid": "0000-0003-4423-4370" - }, - "description": "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).", - "example": "90062901", - "homepage": "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx", - "mappings": { - "cellosaurus": "ECACC" - }, - "name": "European Collection of Authenticated Cell Culture", - "pattern": "^\\d+$", - "uri_format": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1" - }, - "ecao": { - "aberowl": { - "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", - "download_owl": "http://aber-owl.net/media/ontologies/ECAO/4/ecao.owl", - "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", - "name": "The Echinoderm Anatomy and Development Ontology", - "prefix": "ECAO" - }, - "bioportal": { - "contact": { - "email": "ettensohn@cmu.edu", - "name": "Charles Ettensohn" - }, - "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", - "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", - "name": "The Echinoderm Anatomy and Development Ontology", - "prefix": "ECAO" - }, - "example": "0107180", - "mappings": { - "aberowl": "ECAO", - "bioportal": "ECAO", - "obofoundry": "ecao", - "ols": "ecao", - "ontobee": "ECAO" - }, - "obofoundry": { - "contact": "ettensohn@cmu.edu", - "contact.github": "ettensohn", - "contact.label": "Charles Ettensohn", - "contact.orcid": "0000-0002-3625-0955", - "depends_on": [ - "cl", - "ro", - "uberon" - ], - "deprecated": false, - "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", - "domain": "anatomy and development", - "download.obo": "http://purl.obolibrary.org/obo/ecao.obo", - "download.owl": "http://purl.obolibrary.org/obo/ecao.owl", - "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", - "license": "CC BY 3.0", - "license.url": "http://creativecommons.org/licenses/by/3.0/", - "name": "The Echinoderm Anatomy and Development Ontology", - "preferredPrefix": "ECAO", - "prefix": "ecao", - "repository": "https://github.com/echinoderm-ontology/ecao_ontology" - }, - "ols": { - "description": "None", - "download_owl": "http://purl.obolibrary.org/obo/ecao.owl", - "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", - "name": "Echinoderm Anatomy and Development Ontology", - "prefix": "ecao", - "version": "2024-08-22", - "version.iri": "http://purl.obolibrary.org/obo/ecao/releases/2024-08-22/ecao.owl" - }, - "ontobee": { - "library": "Library", - "name": "The Echinoderm Anatomy and Development Ontology", - "prefix": "ECAO" - }, - "pattern": "^\\d{7}$", - "uri_format": "http://purl.obolibrary.org/obo/ECAO_$1" - }, "ec": { "bartoc": { "description": "By the late 1950's it had become evident that the nomenclature of enzymology, in the absence of any guiding authority, in a period when the number of known enzymes was increasing rapidly, was getting out of hand. The naming of enzymes by individual workers had proved far from satisfactory in practice. In many cases the same enzymes became known by several different names, while conversely the same name was sometimes given to different enzymes. Many of the names conveyed little or no idea of the nature of the reactions catalysed, and similar names were sometimes given to enzymes of quite different types. To meet this situation, various attempts to bring order into the general nomenclature of enzymes, or into that of particular groups of enzymes, were made by individuals or small groups of specialists, but none of the resulting nomenclatures met with general approval. (...) The Enzyme List in the sixth edition (1992) contains 3540 entries, of which 178 record enzymes which are now transferred elsewhere in the list, and 166 have been deleted completely. Thus the number of enzymes actually listed is 3196, an increase of 29% on the 1984 edition.", @@ -31228,6 +31138,7 @@ "ECCODE", "EC_CODE", "ec-code", + "eccode", "intenz" ], "togoid": { @@ -31281,6 +31192,96 @@ "uri_format": "http://enzyme.expasy.org/EC/$1" } }, + "ecacc": { + "cellosaurus": { + "category": "Cell line collections (Providers)", + "homepage": "https://www.culturecollections.org.uk/about-us/ecacc/", + "name": "European Collection of Cell Cultures", + "prefix": "ECACC", + "uri_format": "https://www.culturecollections.org.uk/products/celllines/detail.jsp?refId=$1" + }, + "contributor": { + "email": "cthoyt@gmail.com", + "github": "cthoyt", + "name": "Charles Tapley Hoyt", + "orcid": "0000-0003-4423-4370" + }, + "description": "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).", + "example": "90062901", + "homepage": "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx", + "mappings": { + "cellosaurus": "ECACC" + }, + "name": "European Collection of Authenticated Cell Culture", + "pattern": "^\\d+$", + "uri_format": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1" + }, + "ecao": { + "aberowl": { + "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", + "download_owl": "http://aber-owl.net/media/ontologies/ECAO/4/ecao.owl", + "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", + "name": "The Echinoderm Anatomy and Development Ontology", + "prefix": "ECAO" + }, + "bioportal": { + "contact": { + "email": "ettensohn@cmu.edu", + "name": "Charles Ettensohn" + }, + "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", + "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", + "name": "The Echinoderm Anatomy and Development Ontology", + "prefix": "ECAO" + }, + "example": "0107180", + "mappings": { + "aberowl": "ECAO", + "bioportal": "ECAO", + "obofoundry": "ecao", + "ols": "ecao", + "ontobee": "ECAO" + }, + "obofoundry": { + "contact": "ettensohn@cmu.edu", + "contact.github": "ettensohn", + "contact.label": "Charles Ettensohn", + "contact.orcid": "0000-0002-3625-0955", + "depends_on": [ + "cl", + "ro", + "uberon" + ], + "deprecated": false, + "description": "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586).", + "domain": "anatomy and development", + "download.obo": "http://purl.obolibrary.org/obo/ecao.obo", + "download.owl": "http://purl.obolibrary.org/obo/ecao.owl", + "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", + "license": "CC BY 3.0", + "license.url": "http://creativecommons.org/licenses/by/3.0/", + "name": "The Echinoderm Anatomy and Development Ontology", + "preferredPrefix": "ECAO", + "prefix": "ecao", + "repository": "https://github.com/echinoderm-ontology/ecao_ontology" + }, + "ols": { + "description": "None", + "download_owl": "http://purl.obolibrary.org/obo/ecao.owl", + "homepage": "https://github.com/echinoderm-ontology/ecao_ontology", + "name": "Echinoderm Anatomy and Development Ontology", + "prefix": "ecao", + "version": "2024-08-22", + "version.iri": "http://purl.obolibrary.org/obo/ecao/releases/2024-08-22/ecao.owl" + }, + "ontobee": { + "library": "Library", + "name": "The Echinoderm Anatomy and Development Ontology", + "prefix": "ECAO" + }, + "pattern": "^\\d{7}$", + "uri_format": "http://purl.obolibrary.org/obo/ECAO_$1" + }, "ecg": { "aberowl": { "description": "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.", From 6bd4d1ee17a837ee8f7aa5d19e07932e075c0e24 Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Tue, 11 Feb 2025 21:15:01 -0500 Subject: [PATCH 11/13] Run prettier --- docs/glossary.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/docs/glossary.md b/docs/glossary.md index 52c24d474..7a8da7e04 100644 --- a/docs/glossary.md +++ b/docs/glossary.md @@ -30,9 +30,8 @@ number (e.g., Gene Ontology), and some are expansive (e.g., [NCI Thesaurus (NCIT)](https://bioregistry.io/efo)). Some resources are complete by definition (e.g., -[Enzyme Classification](https://bioregistry.io/ec)), some resources are -complete but subject to change (e.g., HGNC), and some are always incomplete -(e.g., PDB). +[Enzyme Classification](https://bioregistry.io/ec)), some resources are complete +but subject to change (e.g., HGNC), and some are always incomplete (e.g., PDB). Resources do not always correspond one-to-one with projects, such as how the ChEMBL database contains both the From be853db9ab5d6173edd05f3e543a9c8ccb5758af Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Wed, 12 Feb 2025 16:25:38 -0500 Subject: [PATCH 12/13] Update CONTRIBUTING.md --- docs/CONTRIBUTING.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/CONTRIBUTING.md b/docs/CONTRIBUTING.md index c5ad9eadd..015953540 100644 --- a/docs/CONTRIBUTING.md +++ b/docs/CONTRIBUTING.md @@ -70,7 +70,7 @@ that's required to go with a given prefix. Unfortunately, these requirements can not be applied retroactively and can not be trivially applied to automatically imported prefixes. In some cases, historical prefixes can be modified to follow these requirements. For example, -Identifiers.org's `ec-code` was renamed to `eccode` while maintaining `ec-code` +Identifiers.org's `ec-code` was renamed to `ec` while maintaining `ec-code` as a synonym. Original discussion about minimum prefix requirements can be found at From 81f63d77f91055d6609e4d183086091eff1e0fc7 Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Wed, 12 Feb 2025 19:27:00 -0500 Subject: [PATCH 13/13] Run prettier --- docs/CONTRIBUTING.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/CONTRIBUTING.md b/docs/CONTRIBUTING.md index 015953540..0c3df32d4 100644 --- a/docs/CONTRIBUTING.md +++ b/docs/CONTRIBUTING.md @@ -70,8 +70,8 @@ that's required to go with a given prefix. Unfortunately, these requirements can not be applied retroactively and can not be trivially applied to automatically imported prefixes. In some cases, historical prefixes can be modified to follow these requirements. For example, -Identifiers.org's `ec-code` was renamed to `ec` while maintaining `ec-code` -as a synonym. +Identifiers.org's `ec-code` was renamed to `ec` while maintaining `ec-code` as a +synonym. Original discussion about minimum prefix requirements can be found at https://github.com/biopragmatics/bioregistry/issues/158.