ERROR: operator does not exist: jsonb = bytea

[martinchapman]

Description

Hard to rule out a quirk of my setup as the source of this, but on the off chance this is a wider issue thought it worth flagging that I'm currently receiving ERROR: operator does not exist: jsonb = bytea from the Spring container on a fresh clone. I understand this issue was identified and fixed as a part of #568 (#568 (comment)), but for some reason it seems to persist for me.

Expected Behavior

Able to successfully view any example workflows after executing the steps in Recommended - Running with Docker.

Actual Behavior

Unable to view any example workflows.

Possible Fix

Behaviour is as expected if reverting the changes in 26843b2.

Fixes attempted with latest commit:

• Later Postgres image versions
• Reverting all (relevant) package version updates since 26843b2
• Pruning Docker system

Steps to Reproduce

1. git clone [email protected]:common-workflow-language/cwlviewer.git
2. cd cwlviewer
3. Optional (issue persists with or without): Switch from Spring image to local build in docker-compose.yml.
4. docker compose up
5. Visit http://localhost:8080/
6. Select 'compile' from 'Don't know what to view?'
7. Select 'Parse Workflow'

Context

Originally occurred after syncing a fork of CWL Viewer.

Your Environment

• Version used: main
• Environment name and version (e.g. Chrome 39, Java 17): Chrome 131.0.6778.70. Docker 27.1.1. Arch (256.8-1-arch) via WSL2 (5.15.167.4-microsoft-standard-WSL2)

[kinow]

Exception logged:

  Hint: No operator matches the given name and argument types. You might need to add explicit type casts.
  Position: 270
2024-11-17 21:27:31,986 ERROR [http-nio-8080-exec-2] o.a.j.l.DirectJDKLog: Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed: org.springframework.dao.InvalidDataAccessResourceUsageException: JDBC exception executing SQL [select w1_0.id,w1_0.cwltool_version,w1_0.doc,w1_0.docker_link,w1_0.inputs,w1_0.label,w1_0.last_commit,w1_0.license_link,w1_0.outputs,w1_0.retrieved_from,w1_0.retrieved_on,w1_0.ro_bundle_path,w1_0.steps,w1_0.visualisation_dot from workflow w1_0 where w1_0.retrieved_from=?] [ERROR: operator does not exist: jsonb = bytea
  Hint: No operator matches the given name and argument types. You might need to add explicit type casts.
  Position: 270] [n/a]; SQL [n/a]] with root cause
org.postgresql.util.PSQLException: ERROR: operator does not exist: jsonb = bytea
  Hint: No operator matches the given name and argument types. You might need to add explicit type casts.
  Position: 270
	at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2713)
	at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2401)
	at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:368)
	at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:498)
	at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:415)
	at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190)
	at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134)
	at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeQuery(ProxyPreparedStatement.java:52)
	at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeQuery(HikariProxyPreparedStatement.java)
	at org.hibernate.sql.results.jdbc.internal.DeferredResultSetAccess.executeQuery(DeferredResultSetAccess.java:239)
	at org.hibernate.sql.results.jdbc.internal.DeferredResultSetAccess.getResultSet(DeferredResultSetAccess.java:163)
	at org.hibernate.sql.results.jdbc.internal.JdbcValuesResultSetImpl.advanceNext(JdbcValuesResultSetImpl.java:254)
	at org.hibernate.sql.results.jdbc.internal.JdbcValuesResultSetImpl.processNext(JdbcValuesResultSetImpl.java:134)
	at org.hibernate.sql.results.jdbc.internal.AbstractJdbcValues.next(AbstractJdbcValues.java:19)
	at org.hibernate.sql.results.internal.RowProcessingStateStandardImpl.next(RowProcessingStateStandardImpl.java:66)
	at org.hibernate.sql.results.spi.ListResultsConsumer.consume(ListResultsConsumer.java:198)
	at org.hibernate.sql.results.spi.ListResultsConsumer.consume(ListResultsConsumer.java:33)
	at org.hibernate.sql.exec.internal.JdbcSelectExecutorStandardImpl.doExecuteQuery(JdbcSelectExecutorStandardImpl.java:361)
	at org.hibernate.sql.exec.internal.JdbcSelectExecutorStandardImpl.executeQuery(JdbcSelectExecutorStandardImpl.java:168)
	at org.hibernate.sql.exec.internal.JdbcSelectExecutorStandardImpl.list(JdbcSelectExecutorStandardImpl.java:93)
	at org.hibernate.sql.exec.spi.JdbcSelectExecutor.list(JdbcSelectExecutor.java:31)
	at org.hibernate.query.sqm.internal.ConcreteSqmSelectQueryPlan.lambda$new$0(ConcreteSqmSelectQueryPlan.java:110)
	at org.hibernate.query.sqm.internal.ConcreteSqmSelectQueryPlan.withCacheableSqmInterpretation(ConcreteSqmSelectQueryPlan.java:303)
	at org.hibernate.query.sqm.internal.ConcreteSqmSelectQueryPlan.performList(ConcreteSqmSelectQueryPlan.java:244)
	at org.hibernate.query.sqm.internal.QuerySqmImpl.doList(QuerySqmImpl.java:518)
	at org.hibernate.query.spi.AbstractSelectionQuery.list(AbstractSelectionQuery.java:367)
	at org.hibernate.query.spi.AbstractSelectionQuery.getSingleResult(AbstractSelectionQuery.java:473)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:405)
	at jdk.proxy2/jdk.proxy2.$Proxy143.getSingleResult(Unknown Source)
	at org.springframework.data.jpa.repository.query.JpaQueryExecution$SingleEntityExecution.doExecute(JpaQueryExecution.java:223)
	at org.springframework.data.jpa.repository.query.JpaQueryExecution.execute(JpaQueryExecution.java:92)
	at org.springframework.data.jpa.repository.query.AbstractJpaQuery.doExecute(AbstractJpaQuery.java:148)
	at org.springframework.data.jpa.repository.query.AbstractJpaQuery.execute(AbstractJpaQuery.java:136)
	at org.springframework.data.repository.core.support.RepositoryMethodInvoker.doInvoke(RepositoryMethodInvoker.java:136)
	at org.springframework.data.repository.core.support.RepositoryMethodInvoker.invoke(RepositoryMethodInvoker.java:120)
	at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.doInvoke(QueryExecutorMethodInterceptor.java:164)
	at org.springframework.data.repository.core.support.QueryExecutorMethodInterceptor.invoke(QueryExecutorMethodInterceptor.java:143)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:184)
	at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:123)
	at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:391)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:184)
	at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:137)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:184)
	at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:135)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:184)
	at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:97)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:184)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:244)
	at jdk.proxy2/jdk.proxy2.$Proxy138.findByRetrievedFrom(Unknown Source)
	at org.commonwl.view.workflow.WorkflowService.getWorkflow(WorkflowService.java:167)
	at org.commonwl.view.workflow.WorkflowController.createWorkflow(WorkflowController.java:140)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:205)
	at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:150)
	at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:118)
	at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:884)
	at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:797)
	at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87)
	at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1081)
	at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:974)
	at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1011)
	at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:914)
	at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:590)
	at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885)
	at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:205)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
	at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
	at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
	at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:167)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:482)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:115)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:341)
	at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:391)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:894)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1740)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52)
	at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
	at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.base/java.lang.Thread.run(Thread.java:840)