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Package claiming OpenSSL 3.2.0 required when conda-tree depends -t <package> reports differently #679

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mkf62 opened this issue Nov 14, 2024 · 2 comments
Open
1 task done

Package claiming OpenSSL 3.2.0 required when conda-tree depends -t <package> reports differently #679

mkf62 opened this issue Nov 14, 2024 · 2 comments
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bug Something isn't working linux

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@mkf62
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mkf62 commented Nov 14, 2024

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

I'm not sure where to post this, but saw a very similar issue (#19801) reported here so figured I'd follow suit. I have a virtual environment installed that utilizes openssl 3.4.0, and the packages that need it all report >3.3.0 is needed for openssl when I run conda-tree depends -t <package>. It seems like mamba is not finding the appropriate package, but I'm not even sure how to start debugging this.

Running on RHEL 9 machine. If I run python through the interpreter, I get no errors. But if I run it through a WSGI application (Flask), I get errors in the apache logs about an OpenSSL version missing, like these:

[Thu Nov 14 13:31:11.629663 2024] [wsgi:error] [pid 3162348:tid 3162534] /opt/miniforge3/envs/chap/lib/python3.12/site-packages/xarray/backends/plugins.py:110: RuntimeWarning: Engine 'rasterio' loading failed:
[Thu Nov 14 13:31:11.629693 2024] [wsgi:error] [pid 3162348:tid 3162534] /lib64/libssl.so.3: version `OPENSSL_3.2.0' not found (required by /opt/miniforge3/envs/chap/lib/python3.12/site-packages/rasterio/../../.././libcurl.so.4)

[Thu Nov 14 13:31:11.641510 2024] [wsgi:error] [pid 3162348:tid 3162534]    File "/opt/miniforge3/envs/chap/lib/python3.12/site-packages/xarray/backends/netCDF4_.py", line 415, in open
[Thu Nov 14 13:31:11.641513 2024] [wsgi:error] [pid 3162348:tid 3162534]      import netCDF4
[Thu Nov 14 13:31:11.641519 2024] [wsgi:error] [pid 3162348:tid 3162534]   File "/opt/miniforge3/envs/chap/lib/python3.12/site-packages/netCDF4/__init__.py", line 3, in <module>
[Thu Nov 14 13:31:11.641523 2024] [wsgi:error] [pid 3162348:tid 3162534]     from ._netCDF4 import *
[Thu Nov 14 13:31:11.641541 2024] [wsgi:error] [pid 3162348:tid 3162534] ImportError: /lib64/libssl.so.3: version `OPENSSL_3.2.0' not found (required by /opt/miniforge3/envs/chap/lib/python3.12/site-packages/netCDF4/../../.././libcurl.so.4)

Any ideas where I need to look or what I need to do to solve something like this? I have already tried deleting and reinstalling the virutal environment and cleaning cache with mamba clean --all.

Installed packages

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
affine                    2.4.0              pyhd8ed1ab_0    conda-forge
archspec                  0.2.3              pyhd8ed1ab_0    conda-forge
attrs                     24.2.0             pyh71513ae_0    conda-forge
aws-c-auth                0.8.0                hcd8ed7f_7    conda-forge
aws-c-cal                 0.8.0                he70792b_1    conda-forge
aws-c-common              0.10.0               hb9d3cd8_0    conda-forge
aws-c-compression         0.3.0                hba2fe39_1    conda-forge
aws-c-event-stream        0.5.0                h127f702_4    conda-forge
aws-c-http                0.9.0                h8a7d7e2_5    conda-forge
aws-c-io                  0.15.1               h2a50c78_1    conda-forge
aws-c-mqtt                0.11.0               hd25e75f_5    conda-forge
aws-c-s3                  0.7.0                h858c4ad_7    conda-forge
aws-c-sdkutils            0.2.1                hba2fe39_0    conda-forge
aws-checksums             0.2.0                hba2fe39_1    conda-forge
aws-crt-cpp               0.29.3               hbc793f2_2    conda-forge
aws-sdk-cpp               1.11.407             h5cd358a_9    conda-forge
azure-core-cpp            1.14.0               h5cfcd09_0    conda-forge
azure-identity-cpp        1.10.0               h113e628_0    conda-forge
azure-storage-blobs-cpp   12.13.0              h3cf044e_1    conda-forge
azure-storage-common-cpp  12.8.0               h736e048_1    conda-forge
azure-storage-files-datalake-cpp 12.12.0              ha633028_1    conda-forge
blinker                   1.9.0              pyhff2d567_0    conda-forge
blosc                     1.21.6               hef167b5_0    conda-forge
bokeh                     3.6.1              pyhd8ed1ab_0    conda-forge
boltons                   24.0.0             pyhd8ed1ab_0    conda-forge
branca                    0.7.2              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hb9d3cd8_2    conda-forge
brotli-bin                1.1.0                hb9d3cd8_2    conda-forge
brotli-python             1.1.0           py312h2ec8cdc_2    conda-forge
bzip2                     1.0.8                h4bc722e_7    conda-forge
c-ares                    1.34.3               heb4867d_0    conda-forge
ca-certificates           2024.8.30            hbcca054_0    conda-forge
certifi                   2024.8.30          pyhd8ed1ab_0    conda-forge
cffi                      1.17.1          py312h06ac9bb_0    conda-forge
cftime                    1.6.4           py312hc0a28a1_1    conda-forge
charset-normalizer        3.4.0              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               3.1.0              pyhd8ed1ab_1    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
conda                     24.9.2          py312h7900ff3_0    conda-forge
conda-libmamba-solver     24.9.0             pyhd8ed1ab_0    conda-forge
conda-package-handling    2.4.0              pyh7900ff3_0    conda-forge
conda-package-streaming   0.11.0             pyhd8ed1ab_0    conda-forge
conda-tree                1.1.0              pyhd8ed1ab_2    conda-forge
contourpy                 1.3.1           py312h68727a3_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
cyrus-sasl                2.1.27               h54b06d7_7    conda-forge
cytoolz                   1.0.0           py312h66e93f0_1    conda-forge
dask                      2024.11.2          pyhd8ed1ab_0    conda-forge
dask-core                 2024.11.2          pyhd8ed1ab_0    conda-forge
dask-expr                 1.1.19             pyhd8ed1ab_0    conda-forge
distributed               2024.11.2          pyhd8ed1ab_0    conda-forge
distro                    1.9.0              pyhd8ed1ab_0    conda-forge
dnspython                 2.7.0              pyhff2d567_0    conda-forge
email-validator           2.2.0              pyhd8ed1ab_0    conda-forge
email_validator           2.2.0                hd8ed1ab_0    conda-forge
flask                     3.1.0              pyhff2d567_0    conda-forge
flask-cors                5.0.0              pyhd8ed1ab_0    conda-forge
flask-sqlalchemy          3.1.1              pyhd8ed1ab_0    conda-forge
fmt                       11.0.2               h434a139_0    conda-forge
folium                    0.18.0             pyhd8ed1ab_0    conda-forge
fonttools                 4.54.1          py312h178313f_1    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
freexl                    2.0.0                h743c826_0    conda-forge
frozendict                2.4.6           py312h66e93f0_0    conda-forge
fsspec                    2024.10.0          pyhff2d567_0    conda-forge
geoalchemy2               0.16.0             pyhd8ed1ab_0    conda-forge
geopandas                 1.0.1              pyhd8ed1ab_1    conda-forge
geopandas-base            1.0.1              pyha770c72_1    conda-forge
geos                      3.13.0               h5888daf_0    conda-forge
geotiff                   1.7.3                h77b800c_3    conda-forge
gflags                    2.2.2             h5888daf_1005    conda-forge
giflib                    5.2.2                hd590300_0    conda-forge
glog                      0.7.1                hbabe93e_0    conda-forge
greenlet                  3.1.1           py312h2ec8cdc_0    conda-forge
h2                        4.1.0              pyhd8ed1ab_0    conda-forge
hdf4                      4.2.15               h2a13503_7    conda-forge
hdf5                      1.14.3          nompi_hdf9ad27_105    conda-forge
hpack                     4.0.0              pyh9f0ad1d_0    conda-forge
hyperframe                6.0.1              pyhd8ed1ab_0    conda-forge
icu                       75.1                 he02047a_0    conda-forge
idna                      3.10               pyhd8ed1ab_0    conda-forge
importlib-metadata        8.5.0              pyha770c72_0    conda-forge
importlib_metadata        8.5.0                hd8ed1ab_0    conda-forge
itsdangerous              2.2.0              pyhd8ed1ab_0    conda-forge
jinja2                    3.1.4              pyhd8ed1ab_0    conda-forge
joblib                    1.4.2              pyhd8ed1ab_0    conda-forge
json-c                    0.18                 h6688a6e_0    conda-forge
jsonpatch                 1.33               pyhd8ed1ab_0    conda-forge
jsonpointer               3.0.0           py312h7900ff3_1    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.7           py312h68727a3_0    conda-forge
krb5                      1.21.3               h659f571_0    conda-forge
lcms2                     2.16                 hb7c19ff_0    conda-forge
ld_impl_linux-64          2.43                 h712a8e2_2    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libabseil                 20240722.0      cxx17_h5888daf_1    conda-forge
libaec                    1.1.3                h59595ed_0    conda-forge
libarchive                3.7.4                hfca40fe_0    conda-forge
libarrow                  18.0.0           h3e543c6_4_cpu    conda-forge
libarrow-acero            18.0.0           h5888daf_4_cpu    conda-forge
libarrow-dataset          18.0.0           h5888daf_4_cpu    conda-forge
libarrow-substrait        18.0.0           h5c8f2c3_4_cpu    conda-forge
libblas                   3.9.0           25_linux64_openblas    conda-forge
libbrotlicommon           1.1.0                hb9d3cd8_2    conda-forge
libbrotlidec              1.1.0                hb9d3cd8_2    conda-forge
libbrotlienc              1.1.0                hb9d3cd8_2    conda-forge
libcblas                  3.9.0           25_linux64_openblas    conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
libcurl                   8.10.1               hbbe4b11_0    conda-forge
libdeflate                1.22                 hb9d3cd8_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 hd590300_2    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.6.4                h5888daf_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    14.2.0               h77fa898_1    conda-forge
libgcc-ng                 14.2.0               h69a702a_1    conda-forge
libgdal-core              3.9.3                hef9eae6_3    conda-forge
libgfortran               14.2.0               h69a702a_1    conda-forge
libgfortran-ng            14.2.0               h69a702a_1    conda-forge
libgfortran5              14.2.0               hd5240d6_1    conda-forge
libgomp                   14.2.0               h77fa898_1    conda-forge
libgoogle-cloud           2.31.0               h804f50b_0    conda-forge
libgoogle-cloud-storage   2.31.0               h0121fbd_0    conda-forge
libgrpc                   1.67.1               hc2c308b_0    conda-forge
libiconv                  1.17                 hd590300_2    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
libkml                    1.3.0             hf539b9f_1021    conda-forge
liblapack                 3.9.0           25_linux64_openblas    conda-forge
libmamba                  1.5.10               hf72d635_1    conda-forge
libmambapy                1.5.10          py312hf3f0a4e_1    conda-forge
libnetcdf                 4.9.2           nompi_h135f659_114    conda-forge
libnghttp2                1.64.0               h161d5f1_0    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libntlm                   1.4               h7f98852_1002    conda-forge
libopenblas               0.3.28          pthreads_h94d23a6_1    conda-forge
libparquet                18.0.0           h6bd9018_4_cpu    conda-forge
libpng                    1.6.44               hadc24fc_0    conda-forge
libpq                     17.0                 h04577a9_4    conda-forge
libprotobuf               5.28.2               h5b01275_0    conda-forge
libre2-11                 2024.07.02           hbbce691_1    conda-forge
librttopo                 1.1.0               h97f6797_17    conda-forge
libsolv                   0.7.30               h3509ff9_0    conda-forge
libspatialite             5.1.0               h1b4f908_11    conda-forge
libsqlite                 3.47.0               hadc24fc_1    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx                 14.2.0               hc0a3c3a_1    conda-forge
libstdcxx-ng              14.2.0               h4852527_1    conda-forge
libthrift                 0.21.0               h0e7cc3e_0    conda-forge
libtiff                   4.7.0                he137b08_1    conda-forge
libutf8proc               2.8.0                h166bdaf_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libwebp-base              1.4.0                hd590300_0    conda-forge
libxcb                    1.17.0               h8a09558_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libxml2                   2.13.5               hb346dea_0    conda-forge
libzip                    1.11.2               h6991a6a_0    conda-forge
libzlib                   1.3.1                hb9d3cd8_2    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lz4                       4.3.3           py312hb3f7f12_1    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              hd590300_1001    conda-forge
mapclassify               2.8.1              pyhd8ed1ab_0    conda-forge
markupsafe                3.0.2           py312h178313f_0    conda-forge
matplotlib-base           3.9.2           py312hd3ec401_2    conda-forge
menuinst                  2.2.0           py312h7900ff3_0    conda-forge
minizip                   4.0.7                h401b404_0    conda-forge
msgpack-python            1.1.0           py312h68727a3_0    conda-forge
msgspec                   0.18.6          py312h98912ed_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
ncurses                   6.5                  he02047a_1    conda-forge
netcdf4                   1.7.1           nompi_py312h21d6d8e_102    conda-forge
networkx                  3.4.2              pyh267e887_2    conda-forge
numpy                     2.1.3           py312h58c1407_0    conda-forge
openjpeg                  2.5.2                h488ebb8_0    conda-forge
openldap                  2.6.8                hedd0468_0    conda-forge
openssl                   3.4.0                hb9d3cd8_0    conda-forge
orc                       2.0.2                he039a57_2    conda-forge
packaging                 24.2               pyhd8ed1ab_0    conda-forge
pandas                    2.2.3           py312hf9745cd_1    conda-forge
partd                     1.4.2              pyhd8ed1ab_0    conda-forge
pcre2                     10.44                hba22ea6_2    conda-forge
pillow                    11.0.0          py312h7b63e92_0    conda-forge
pip                       24.3.1             pyh8b19718_0    conda-forge
platformdirs              4.3.6              pyhd8ed1ab_0    conda-forge
pluggy                    1.5.0              pyhd8ed1ab_0    conda-forge
proj                      9.5.0                h12925eb_0    conda-forge
psutil                    6.1.0           py312h66e93f0_0    conda-forge
psycopg2                  2.9.9           py312hfaedaf9_2    conda-forge
pthread-stubs             0.4               hb9d3cd8_1002    conda-forge
pyarrow                   18.0.0          py312h7900ff3_1    conda-forge
pyarrow-core              18.0.0          py312h01725c0_1_cpu    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.6           py312h98912ed_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pyogrio                   0.10.0          py312he8b4914_0    conda-forge
pyparsing                 3.2.0              pyhd8ed1ab_1    conda-forge
pyproj                    3.7.0           py312he630544_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.12.6          hc5c86c4_2_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-dotenv             1.0.1              pyhd8ed1ab_0    conda-forge
python-tzdata             2024.2             pyhd8ed1ab_0    conda-forge
python_abi                3.12                    5_cp312    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0.2           py312h66e93f0_1    conda-forge
qhull                     2020.2               h434a139_5    conda-forge
rasterio                  1.4.2           py312h8456570_0    conda-forge
re2                       2024.07.02           h77b4e00_1    conda-forge
readline                  8.2                  h8228510_1    conda-forge
reproc                    14.2.4.post0         hd590300_1    conda-forge
reproc-cpp                14.2.4.post0         h59595ed_1    conda-forge
requests                  2.32.3             pyhd8ed1ab_0    conda-forge
rioxarray                 0.17.0             pyhd8ed1ab_0    conda-forge
ruamel.yaml               0.18.6          py312h66e93f0_1    conda-forge
ruamel.yaml.clib          0.2.8           py312h66e93f0_1    conda-forge
s2n                       1.5.7                hd3e8b83_0    conda-forge
scikit-learn              1.5.2           py312h7a48858_1    conda-forge
scipy                     1.14.1          py312h62794b6_1    conda-forge
setuptools                75.3.0             pyhd8ed1ab_0    conda-forge
shapely                   2.0.6           py312h391bc85_2    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.2.1                ha2e4443_0    conda-forge
sniffio                   1.3.1              pyhd8ed1ab_0    conda-forge
snuggs                    1.4.7              pyhd8ed1ab_1    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
sqlalchemy                2.0.36          py312h66e93f0_0    conda-forge
sqlite                    3.47.0               h9eae976_1    conda-forge
tblib                     3.0.0              pyhd8ed1ab_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
toolz                     1.0.0              pyhd8ed1ab_0    conda-forge
tornado                   6.4.1           py312h66e93f0_1    conda-forge
tqdm                      4.67.0             pyhd8ed1ab_0    conda-forge
truststore                0.10.0             pyhd8ed1ab_0    conda-forge
typing-extensions         4.12.2               hd8ed1ab_0    conda-forge
typing_extensions         4.12.2             pyha770c72_0    conda-forge
tzdata                    2024b                hc8b5060_0    conda-forge
unicodedata2              15.1.0          py312h66e93f0_1    conda-forge
uriparser                 0.9.8                hac33072_0    conda-forge
urllib3                   2.2.3              pyhd8ed1ab_0    conda-forge
werkzeug                  3.1.3              pyhff2d567_0    conda-forge
wheel                     0.45.0             pyhd8ed1ab_0    conda-forge
xarray                    2024.10.0          pyhd8ed1ab_0    conda-forge
xerces-c                  3.2.5                h988505b_2    conda-forge
xorg-libxau               1.0.11               hb9d3cd8_1    conda-forge
xorg-libxdmcp             1.1.5                hb9d3cd8_0    conda-forge
xyzservices               2024.9.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.8.0                h59595ed_0    conda-forge
zict                      3.0.0              pyhd8ed1ab_0    conda-forge
zipp                      3.21.0             pyhd8ed1ab_0    conda-forge
zlib                      1.3.1                hb9d3cd8_2    conda-forge
zstandard                 0.23.0          py312hef9b889_1    conda-forge
zstd                      1.5.6                ha6fb4c9_0    conda-forge

Environment info

active environment : chap
    active env location : /opt/miniforge3/envs/chap
            shell level : 2
       user config file : /root/.condarc
 populated config files : /opt/miniforge3/.condarc
          conda version : 24.7.1
    conda-build version : not installed
         python version : 3.12.6.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=skylake_avx512
                          __conda=24.7.1=0
                          __glibc=2.34=0
                          __linux=5.14.0=0
                          __unix=0=0
       base environment : /opt/miniforge3  (writable)
      conda av data dir : /opt/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /opt/miniforge3/pkgs
                          /root/.conda/pkgs
       envs directories : /opt/miniforge3/envs
                          /root/.conda/envs
               platform : linux-64
             user-agent : conda/24.7.1 requests/2.32.3 CPython/3.12.6 Linux/5.14.0-427.42.1.el9_4.x86_64 rhel/9.4 glibc/2.34 solver/libmamba conda-libmamba-solver/24.7.0 libmambapy/1.5.9
                UID:GID : 0:0
             netrc file : None
           offline mode : False
@mkf62 mkf62 added the bug Something isn't working label Nov 14, 2024
@hmaarrfk
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can you please provide the output of the command:

env

@hmaarrfk hmaarrfk added the linux label Nov 15, 2024
@mkf62
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mkf62 commented Nov 15, 2024

can you please provide the output of the command:

env

Here you are, ran as root:

SHELL=/bin/bash
NVM_INC=/root/.nvm/versions/node/v20.5.0/include/node
SUDO_GID=100
CONDA_EXE=/opt/miniforge3/bin/conda
_CE_M=
HOSTNAME=hdc
HISTSIZE=1000
SUDO_COMMAND=/bin/su
SUDO_USER=fd7
XML_CATALOG_FILES=file:///opt/miniforge3/etc/xml/catalog file:///etc/xml/catalog
PWD=/home/fd7
LOGNAME=root
CONDA_PREFIX=/opt/miniforge3
HOME=/root
LANG=en_US.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:
CONDA_PROMPT_MODIFIER=(base) 
NVM_DIR=/root/.nvm
TERM=xterm-256color
_CE_CONDA=
LESSOPEN=||/usr/bin/lesspipe.sh %s
USER=root
CONDA_SHLVL=1
SHLVL=1
NVM_CD_FLAGS=
CONDA_PYTHON_EXE=/opt/miniforge3/bin/python
CONDA_DEFAULT_ENV=base
which_declare=declare -f
XDG_DATA_DIRS=/root/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
PATH=/opt/miniforge3/bin:/opt/miniforge3/condabin:/root/.nvm/versions/node/v20.5.0/bin:/root/.local/bin:/root/bin:/opt/miniforge3/bin:/sbin:/bin:/usr/sbin:/usr/bin:/var/cfengine/bin
SUDO_UID=6412
NVM_BIN=/root/.nvm/versions/node/v20.5.0/bin
MAIL=/var/spool/mail/fd7
BASH_FUNC_which%%=() {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
_=/bin/env

I also decided to run it as the user that actually runs the Apache applications. I can see /opt/miniforge3/bin in it's PATH, but I'm wondering if it needs the others like /opt/miniforge3/condabin? :

SHELL=/bin/bash
HISTCONTROL=ignoredups
HISTSIZE=1000
HOSTNAME=hdc
PWD=/home/hydro
LOGNAME=hydro
HOME=/home/hydro
LANG=en_US.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:
TERM=xterm-256color
LESSOPEN=||/usr/bin/lesspipe.sh %s
USER=hydro
SHLVL=1
which_declare=declare -f
XDG_DATA_DIRS=/home/hydro/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
PATH=/home/hydro/.local/bin:/home/hydro/bin:/opt/miniforge3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/var/cfengine/bin
MAIL=/var/spool/mail/hydro
BASH_FUNC_which%%=() {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
_=/usr/bin/env

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@hmaarrfk @mkf62