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This is more of a question rather than a description of a bug.
While trying to run incidence analysis, the code stopped while trying to run function generateTargetDenominatorCohortSet.
The error (part of it) I got is the following:
Error in `validateGeneratedCohortSet()`:
! There is overlap between entries in the cohort, 18 overlaps detected first 5:
I also got the same error message (but with more overlaps) while running function cdm_from_con but I could get past that by setting argument .soft_validation to FALSE.
From the CDMConnector documentation of the function above we read:
Other analytic packages may break or produce incorrect results if soft_validation is TRUE and the observation period table contains overlapping observation periods.
I assume that this is the case for the IncidencePrevalence package but I would like to confirm with you.
My questions are the following:
Is function generateTargetDenominatorCohortSet errors because ignoring overlapping observation periods would overestimate the time in the denominator?
Is there a potential workaround to prevent this error from popping up? Or do we have to resolve this during ETL?
Thanks,
George
The text was updated successfully, but these errors were encountered:
Hi,
This is more of a question rather than a description of a bug.
While trying to run incidence analysis, the code stopped while trying to run function
generateTargetDenominatorCohortSet
.The error (part of it) I got is the following:
I also got the same error message (but with more overlaps) while running function
cdm_from_con
but I could get past that by setting argument.soft_validation
toFALSE
.From the
CDMConnector
documentation of the function above we read:I assume that this is the case for the
IncidencePrevalence
package but I would like to confirm with you.My questions are the following:
generateTargetDenominatorCohortSet
errors because ignoring overlapping observation periods would overestimate the time in the denominator?Thanks,
George
The text was updated successfully, but these errors were encountered: