VCF to RDF Mapping

VCF to RDF Mapping

The team worked to produce an ontology mapping from Variant Call Format (VCF) files to RDF, to facilitate offline conversion of VCF to RDF formats as well as to enable querying VCF files directly with SPARQL.

BioHackathon Team

• Worked on by Raoul, Arto, Kieron.
• Based on previous work at BioHackathon 2014 by Raoul and Francesco.

Software Produced

• https://github.com/ruby-rdf/rdf-vcf *
• https://github.com/helios/bio-sparql-otf