-
Notifications
You must be signed in to change notification settings - Fork 4
/
Copy pathanalyzeCrowdingSurvey3.m
557 lines (542 loc) · 21.4 KB
/
analyzeCrowdingSurvey3.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
%% Analyze the data collected by runCrowdingSurvey3. May 2019
% Ignore data whose thresholds suggest poor fixation.
% For VSS 2019.
experiment='CrowdingSurvey3';
printFilenames=false;
makePlotLinear=false;
myPath=fileparts(mfilename('fullpath')); % Takes 0.1 s.
addpath(fullfile(myPath,'lib')); % Folder in same directory as this M file.
dataFolder=fullfile(fileparts(mfilename('fullpath')),'data');
cd(dataFolder);
close all
%% READ ALL DATA OF EXPERIMENT FILES INTO A LIST OF THRESHOLDS "oo".
vars={'experiment' 'condition' 'conditionName' 'dataFilename' ... % 'experiment'
'experimenter' 'observer' 'localHostName' 'trialsDesired' 'thresholdParameter' ...
'eccentricityXYDeg' 'targetDeg' 'spacingDeg' 'flankingDirection'...
'viewingDistanceCm' 'durationSec' ...
'contrast' 'pixPerCm' 'nearPointXYPix' 'beginningTime'...
'block' 'blocksDesired' 'brightnessSetting' 'trialData' 'targetFont' 'script' 'task'};
oo1=ReadExperimentData(experiment,vars);
fprintf('%4.0f thresholds in experiment %s\n',length(oo1),experiment);
% oo2=ReadExperimentData('CrowdingSurvey2',vars);
% fprintf('%4.0f thresholds in experiment %s\n',length(oo2),'CrowdingSurvey2');
% oo=[oo1 oo2];
oo=oo1;
fprintf('%4.0f thresholds all together\n',length(oo));
%% CLEAN
nanCounter=0;
for oi=1:length(oo)
oo(oi).P=mean([oo(oi).trialData.targetScores]);
switch oo(oi).thresholdParameter
case 'size'
oo(oi).spacingDeg=nan;
oo(oi).flankingDirection='none';
case 'spacing'
oo(oi).targetDeg=nan;
oo(oi).spacingDegMaxTested=max([oo(oi).trialData.spacingDeg]);
end
mate=[];
for ii=[oi-1 oi+1]
if ii<1 || ii>length(oo)
continue
end
if all(oo(oi).eccentricityXYDeg==-oo(ii).eccentricityXYDeg) && ...
streq(oo(oi).thresholdParameter,oo(ii).thresholdParameter) &&...
streq(oo(oi).targetFont,oo(ii).targetFont) &&...
streq(oo(oi).observer,oo(ii).observer)
mate=ii;
break
end
end
if isempty(mate)
warning('Found point %d at (%.1f %.1f) with no mate at -eccentricityXYDeg.',...
oi,oo(oi).eccentricityXYDeg(1),oo(oi).eccentricityXYDeg(2));
list=oi;
else
list=[oi mate];
oo(oi).mate=mate;
oo(mate).mate=oi;
end
if ismember(oo(oi).observer,{'Delisia Cuebas'})
if ismember(oo(oi).thresholdParameter,{'spacing'})
% Foveal crowding collected with wrong font.
if all(oo(oi).eccentricityXYDeg==[0 0])
oo(oi).spacingDeg=nan;
fprintf('Setting to nan, %s crowding at (%.0f %.0f) deg with %s font.\n',...
oo(oi).observer,oo(oi).eccentricityXYDeg,oo(oi).targetFont);
end
% Crowding at (0 5) with Pelli performed badly.
if all(abs(oo(oi).eccentricityXYDeg)==[5 0]) && ismember(oo(oi).targetFont,{'Pelli'})
oo(oi).spacingDeg=nan;
fprintf('Setting to nan, %s crowding at (%.0f %.0f) deg with %s font.\n',...
oo(oi).observer,oo(oi).eccentricityXYDeg,oo(oi).targetFont);
end
end
end
oo(oi).radialDeg=norm(oo(oi).eccentricityXYDeg);
oo(oi).P=mean([oo(oi).trialData.targetScores]);
end
% Exclusion criteria. In many conditions every threshold has a mate,
% because we measured each eccentricity with the opposite eccentricity,
% interleaved. When we exclude a threshold we also exclude its mate, if it
% has one. We exclude any point with proportion correct less that 0.55
% (about 20% of data), and we exclude any pair of points (point and its
% mate) for which the absolute log ratio exceeds 0.2. 10^0.2=1.6.
bad=false(size(oo));
for oi=1:length(oo)
bad(oi)=bad(oi) || oo(oi).P<0.55;
if ~isempty(oo(oi).spacingDeg) && ~isempty(oo(oi).mate) && ~isempty(oo(oo(oi).mate).spacingDeg)
% If has mate, then ratio must not be extreme.
badPair=abs(log10(oo(oi).spacingDeg/oo(oo(oi).mate).spacingDeg))>0.2;
% If either is bad, then mark mate bad too.
bad(oi)=bad(oi)|bad(oo(oi).mate)|badPair;
bad(oo(oi).mate)=bad(oo(oi).mate)|bad(oi);
end
end
for oi=find(bad)
if ~isempty(oo(oi).spacingDeg) && ~isempty(oo(oi).mate) && ~isempty(oo(oo(oi).mate).spacingDeg)
logRatio=abs(log10(oo(oi).spacingDeg/oo(oo(oi).mate).spacingDeg));
else
logRatio=[];
end
fprintf('%d: P %.2f, log ratio %.1f, setting to nan, %s %s at %c(%.0f %.0f) deg with %s font.\n',...
oi,oo(oi).P,logRatio,...
oo(oi).observer,oo(oi).thresholdParameter,...
char(177),oo(oi).eccentricityXYDeg,oo(oi).targetFont);
end
nanCounter=0;
for oi=find(bad)
nanCounter=nanCounter+1;
oo(oi).spacingDeg=nan;
oo(oi).targetDeg=nan;
end
fprintf('<strong>Replaced %d of %d data points (%.0f%%) by nan.</strong>\n',nanCounter,length(oo),100*nanCounter/length(oo));
%% SELECT CONDITION(S)
if isempty(oo)
error('No conditions selected.');
end
% Report the relevant fields of each file.
t=struct2table(oo,'AsArray',true);
t=sortrows(t,{'observer' 'thresholdParameter' 'radialDeg'});
if printFilenames
fprintf('Ready to analyze %d thresholds:\n',length(oo));
switch experiment
case {'CrowdingSurvey3'}
disp(t(:,{'experiment' 'observer' 'localHostName' 'experimenter'...
'thresholdParameter' 'eccentricityXYDeg' ...
'flankingDirection' 'spacingDeg' 'targetDeg' ...
'spacingDegMaxTested' 'P' 'targetFont' ...
'dataFilename' ...
}));
end
end
t=sortrows(t,{'thresholdParameter' 'observer' 'radialDeg'});
filename=sprintf('%sData.xls',oo(1).experiment);
fprintf('<strong>Writing data to ''%s''.\n</strong>',filename);
writetable(t,fullfile(dataFolder,filename));
% return
%% SUMMARIZE WHAT WE HAVE FOR EACH OBSERVER
observers=unique({oo.observer});
s=[];
for si=1:length(observers)
s(si).observer=observers{si};
tt=t(ismember(t.observer,{observers{si}}),:);
s(si).conditions=height(tt);
s(si).experimenter=unique(table2cell(tt(:,'experimenter')));
s(si).experiment=unique(table2cell(tt(:,'experiment')));
s(si).localHostName=unique(table2cell(tt(:,'localHostName')));
s(si).numberOfComputers=length(s(si).localHostName);
params={'size' 'spacing'};
for j=1:length(params)
ttt=tt(ismember(tt.thresholdParameter,{params{j}}),:);
ecc=table2array(ttt(:,'radialDeg'))';
s(si).([params{j} 'EccDeg'])=sprintf('%g ',ecc);
if height(ttt)>0
s(si).localHostName=table2array(ttt(1,'localHostName'));
else
s(si).localHostName='';
end
end
s(si).beginningTime=min(table2array(tt(:,'beginningTime')));
s(si).date=datestr(datevec(s(si).beginningTime));
end
sTable=struct2table(s);
sTable=sortrows(sTable,{'beginningTime'});
sTable.beginningTime=[];
fprintf('\n<strong>%.0f rows. One row per observer, sorted by date:</strong>\n',height(sTable));
disp(sTable(:,{'date' 'conditions' 'observer' 'localHostName' ...
'experimenter' 'experiment'...
'spacingEccDeg' 'sizeEccDeg'}));
%% Compute each observer's mean and SD of deviation from log normal.
% Struct s with fields: observer, meanReLogNormal, sdReLogNorm.
% Assume we are given a huge oo struct, and each row has one threshold, and
% each row can be any observer.
s=[]; % s(si) is an array struct, indexed across observers.
observers=unique({oo.observer});
for si=1:length(observers)
s(si).observer=observers{si};
ok=ismember({oo.observer},observers{si}); % list of conditions for this observer.
oo1=oo(ok); % All conditions for one observer.
s(si).conditions=length(oo1);
for oi=1:length(oo1) % Iterate over all conditions for this observer.
s(si).eccentricityXYDeg(1:2,oi)=oo1(oi).eccentricityXYDeg;
s(si).radialDeg(oi)=norm(oo1(oi).eccentricityXYDeg);
s(si).beginningTime=oo1(1).beginningTime;
s(si).localHostName=oo1(1).localHostName;
s(si).experimenter=oo1(1).experimenter;
s(si).experiment=oo1(1).experiment;
s(si).date=datestr(datevec(s(si).beginningTime));
s(si).targetFont{oi}=oo1(oi).targetFont;
s(si).script{oi}=oo1(oi).script;
s(si).task{oi}=oo1(oi).task;
s(si).thresholdParameter{oi}=oo1(oi).thresholdParameter;
switch oo1(oi).thresholdParameter
case 'size'
s(si).sizeDeg(oi)=oo1(oi).targetDeg;
s(si).spacingDeg(oi)=nan;
s(si).sizeReNominal(oi)=oo1(oi).targetDeg/NominalAcuityDeg(oo1(oi).eccentricityXYDeg);
s(si).spacingReNominal(oi)=nan;
case 'spacing'
s(si).sizeDeg(oi)=nan;
s(si).spacingDeg(oi)=oo1(oi).spacingDeg;
s(si).sizeReNominal(oi)=nan;
s(si).spacingReNominal(oi)=...
oo1(oi).spacingDeg/NominalCrowdingDistanceDeg(oo1(oi).eccentricityXYDeg);
end
end
ok=isfinite(s(si).eccentricityXYDeg(1,:));
s(si).meanLogSizeReNominal=mean(log10(s(si).sizeReNominal(ok)),'omitnan');
s(si).SDLogSizeReNominal=std(log10(s(si).sizeReNominal(ok)),'omitnan');
ok=s(si).eccentricityXYDeg(1,:)~=0;
s(si).meanLogPeripheralSpacingReNominal=mean(log10(s(si).spacingReNominal(ok)),'omitnan');
s(si).SDLogPeripheralSpacingReNominal=std(log10(s(si).spacingReNominal(ok)),'omitnan');
sortX=-10;
ii=find(s(si).eccentricityXYDeg(1,:)==sortX);
if isempty(ii)
s(si).sort=nan;
else
ii=ii(1);
s(si).sort=s(si).meanLogPeripheralSpacingReNominal;
end
end
t=struct2table(s);
t=sortrows(t,'sort');
s=table2struct(t);
if 1
fprintf('\n<strong>%.0f observers, sorted by MeanLogPeripheralSpacing.\n</strong>',...
height(t));
disp(t);
tableTitle='List of observers, sorted by peripheral crowding';
tableFile=fullfile(fileparts(mfilename('fullpath')),'data',[tableTitle '.csv']);
writetable(t(:,{'observer' 'conditions' 'date' 'beginningTime' 'localHostName' ...
'experimenter' 'experiment' 'meanLogPeripheralSpacingReNominal' ...
'SDLogPeripheralSpacingReNominal'}),tableFile);
end
if 1
fprintf('\n<strong>%.0f observers, sorted by name.\n</strong>',...
height(t));
t.observerLower=lower(t.observer);
t=sortrows(t,{'observerLower'});
disp(t(:,{'observer' 'conditions' 'localHostName' 'date' 'experimenter'}));
tableTitle='List of observers, alphabetical';
tableFile=fullfile(fileparts(mfilename('fullpath')),'data',[tableTitle '.csv']);
writetable(t(:,{'observer' 'conditions' 'localHostName' 'date' 'beginningTime' ...
'experimenter' }),tableFile);
end
% return
% Plot crowding function for each observer.
figureTitle=sprintf('%d-crowding-functions',length(s));
r=Screen('Rect',0);
r(3)=r(3)/2;
r=r*0.8;
figure('Position',r,'DefaultAxesFontSize',6,'DefaultFigurePaperPositionMode','auto')
h=gcf;
h.Name=figureTitle;
% h.PaperOrientation='landscape';
h.Units='inches';
h.PaperPosition=[0.25 .25 8 10.5];
ratio=r(3)/r(4);
m=ceil(sqrt(length(s)/ratio));
n=ceil(length(s)/m);
p=[];
% si indexs through the observers.
for si=1:length(s)
subplot(m,n,si);
[~,jj]=sort(s(si).radialDeg);
ecc=s(si).radialDeg(jj);
eccXY=s(si).eccentricityXYDeg(:,jj);
spacing=s(si).spacingDeg(jj);
pelli=ismember(s(si).targetFont(jj),{'Pelli'});
color={'r' 'b'};
name={'vertical' 'horizontal'};
for k=1:length(color)
hv=eccXY(k,:)==0 & isfinite(spacing);
if sum(hv)==0
continue
end
ec=ecc(hv);
sp=spacing(hv);
hold on
clear medsp
for j=1:length(ec)
medsp(j)=median(sp(ec==ec(j)));
end
p(k)=plot(ec,medsp,[color{k} '-'],'DisplayName',name{k});
plot(ecc(hv & ~pelli),spacing(hv & ~pelli),[color{k} 'x']);
if any(hv & pelli)
pe=plot(ecc(hv & pelli),spacing(hv & pelli),'gx');
end
hold off
end
title(s(si).observer)
xlabel('Ecc (deg)');
ylabel('Spacing (deg)');
% legend(p);
% legend('boxoff');
% legend('Location','northwest');
ylim([0 4]);
xlim([0 10]);
end
set(findall(gcf,'-property','FontSize'),'FontSize',7);
annotation('textbox','String','x',...
'Position',[0.75 .9 .1 .1],'Color','green',...
'LineStyle','none','FontSize',10);
annotation('textbox','String',' indicates Pelli font',...
'Position',[0.75 .9 .1 .1],...
'LineStyle','none','FontSize',10);
annotation('textbox','String','--',...
'Position',[.1 0.88 .1 .1],'Color','blue',...
'LineStyle','none','FontSize',10);
annotation('textbox','String',' horizontal',...
'Position',[.1 0.88 .1 .1],...
'LineStyle','none','FontSize',10);
annotation('textbox','String','--',...
'Position',[.1 0.9 .1 .1],'Color','red',...
'LineStyle','none','FontSize',10);
annotation('textbox','String',' vertical',...
'Position',[.1 0.9 .1 .1],...
'LineStyle','none','FontSize',10);
figureTitle=sprintf('%d-crowding-functions',length(s));
graphFile=fullfile(fileparts(mfilename('fullpath')),'data',[figureTitle '.pdf']);
saveas(gcf,graphFile,'pdf')
return
figure
count=0;
for si=1:length(s)
s(si).quantile=si/length(s);
s(si).color=[1 0 0]*s(si).quantile+[0 1 0]*(1-s(si).quantile);
if s(si).SDLogPeripheralSpacingReNominal>0.26
% continue
end
if s(si).meanLogPeripheralSpacingReNominal>-1 && s(si).meanLogPeripheralSpacingReNominal<0.2
% Plot only the extremes of crowding distance.
% continue
end
% Spacing
ok=ismember({oo.observer},s(si).observer); % list of conditions for this observer.
ok=ok & ismember({oo.thresholdParameter},'spacing');
oo1=oo(ok); % All conditions for this observer and measure.
clear x y y2
for oi=1:length(oo1)
% x(oi)=abs(oo1(oi).eccentricityXYDeg(1));
x(oi)=oo1(oi).eccentricityXYDeg(1);
y(oi)=oo1(oi).spacingDeg / NominalCrowdingDistanceDeg(oo1(oi).eccentricityXYDeg);
y2(oi)=oo1(oi).targetDeg / NominalAcuityDeg(oo1(oi).eccentricityXYDeg);
end
[~,ii]=sort(x);
x=x(ii);
y=y(ii);
y2=y2(ii);
subplot(2,1,1)
semilogy(x,y,'-o','Color',s(si).color);
hold on
ylabel('Crowding dist re nominal');
xlabel('X eccentrity (deg)');
title('Crowding vs eccentricity');
text(-9.8,.015,'Nominal crowding distance = 0.3*(ecc+0.15)');
coloringMessage=sprintf('Color indicates quantile of crowding distance at (%d,0) deg.',...
sortX);
text(-9.8,60,coloringMessage);
ax=gca;
ax.FontSize=12;
count=count+1;
% Acuity
ok=ismember({oo.observer},s(si).observer); % list of conditions for this observer.
ok=ok & ismember({oo.thresholdParameter},'size');
oo1=oo(ok); % All conditions for this observer and measure.
if ~isempty(oo1)
clear x y
for oi=1:length(oo1)
% x(oi)=abs(oo1(oi).eccentricityXYDeg(1));
x(oi)=oo1(oi).eccentricityXYDeg(1);
y(oi)=oo1(oi).targetDeg / NominalAcuityDeg(oo1(oi).eccentricityXYDeg);
end
[~,ii]=sort(x);
x=x(ii);
y=y(ii);
subplot(2,1,2)
semilogy(x,y,'-o','Color',s(si).color);
hold on
xlim([-10 10]);
ylim([.001 10]);
ylabel('Acuity re nominal');
xlabel('X eccentrity (deg)');
title('Acuity vs eccentricity');
text(-9.8,.015/10,'Nominal acuity = 0.029*(ecc+2.72)');
text(-9.8,6,coloringMessage);
ax=gca;
ax.FontSize=12;
end
end
subplot(2,1,1)
text(8.5,.015,sprintf('N = %d',count));
subplot(2,1,2)
text(8.5,.015/10,sprintf('N = %d',count));
% SAVE PLOT TO DISK
figureTitle='Crowding & acuity vs eccentricity';
% graphFile=fullfile(fileparts(mfilename('fullpath')),'data',[figureTitle '.eps']);
% saveas(gcf,graphFile,'epsc')
fprintf('<strong>Writing ''%s.pdf'' to disk.</strong>\n',figureTitle);
graphFile=fullfile(fileparts(mfilename('fullpath')),'data',[figureTitle '.pdf']);
saveas(gcf,graphFile,'pdf')
return
%% COMPUTE MEAN FOR EACH OBSERVER FOR EACH MEASURE
% Replace repeated measures by their mean.
% The new table has the mean of each observer, at each location and
% flankingDirection.
% t=sortrows(t,{'eccentricityXYDeg','thresholdParameter','observer'});
tmean=table();
t(:,'n')={1}; % Number of thresholds represented by each row.
ti=1; % row index
while ~isempty(t)
if ti>1
tmean(ti,:)=tmean(1,:); % Add a row.
end
tmean(ti,t.Properties.VariableNames)=t(1,:);
tmean(:,{'spacingDeg' 'targetDeg'})=[];
match=ismember(t{:,'observer'},t{1,'observer'}) ...
& ismember(t.eccentricityXYDeg(:,1),t(1,:).eccentricityXYDeg(:,1)) ...
& ismember(t.flankingDirection,t(1,:).flankingDirection);
tmean(ti,'n')={sum(match)};
if sum(match)==0
error('No match.');
end
v=log10(t{match,'spacingDeg'});
v=vector(isfinite(v));
tmean(ti,'logSpacingDegMean')={mean(v)};
tmean(ti,'logSpacingDegSD')={std(v)};
tmean(ti,'logSpacingDegN')={length(v)};
v=log10(t{match,'targetDeg'});
v=vector(isfinite(v));
tmean(ti,'logAcuityDegMean')={mean(v)};
tmean(ti,'logAcuityDegSD')={std(v)};
tmean(ti,'logAcuityDegN')={length(v)};
t(match,:)=[];
ti=ti+1;
end
t=tmean;
clear height
fprintf('Repeated measures have been replaced by their means. %d thresholds over %d conditions.\n',sum(t.n),height(t));
disp(t(:,{'thresholdParameter','observer','n','eccentricityXYDeg', ...
'flankingDirection'}));
if false % SKIP HISTOGRAMS
%% PLOT HISTOGRAMS (ACROSS OBSERVERS) OF SEVERAL KINDS OF THRESHOLD. AT ±10, ±5, ±2.5, 0 DEG.
figure;
graphWidth=25;
graphHeight=50;
set(0,'units','centimeters');
screenSize=get(groot,'Screensize');
set(gcf,'units','centimeters','position',...
[screenSize(3)-graphWidth,0,graphWidth,graphHeight])
plusMinus=char(177);
for type=1:3
switch type
case 1
ok=streq(t.thresholdParameter,'size');
x=t(ok,:).logAcuityDegMean;
name='Acuity (deg)';
x=x(isfinite(x)); % Remove nans.
m=mean(x);
sd=std(x);
se=mean(t(ok,:).logAcuityDegSD./sqrt(t(ok,:).logAcuityDegN))/sqrt(length(x));
name=sprintf('%s, mean %.1f%c%.1f, Retest SE %.2f',name,m,plusMinus,sd,se);
case 2
ok=streq(t.thresholdParameter,'spacing') & ...
(streq(t.flankingDirection,'radial') | streq(t.flankingDirection,'horizontal'));
x=t{ok,'logSpacingDegMean'};
name='log Radial or Horizontal crowding distance (deg)';
x=x(isfinite(x)); % Remove nans.
m=mean(x);
sd=std(x);
se=mean(t(ok,:).logSpacingDegSD./sqrt(t(ok,:).logSpacingDegN))/sqrt(length(x));
name=sprintf('%s, mean %.1f%c%.1f, Retest SE %.2f',name,m,plusMinus,sd,se);
case 3
ok=streq(t.thresholdParameter,'spacing') & streq(t.flankingDirection,'tangential');
x=t{ok,'logSpacingDegMean'};
name='log Tangential crowding distance (deg)';
x=x(isfinite(x)); % Remove nans.
m=mean(x);
sd=std(x);
okPositive=ok & t.logSpacingDegSD>0;
se=mean(t(okPositive,:).logSpacingDegSD ./ sqrt(t(okPositive,:).logSpacingDegN))/sqrt(length(x));
name=sprintf('%s, mean %.1f%c%.1f, Retest SE %.2f',name,m,plusMinus,sd,se);
end
if sum(ok)==0
continue
end
ti=find(ok);
parameter=name;
subplot(3,1,type)
histogram(x,'BinWidth',0.1);
ylabel('Count');
xlabel(parameter);
title(sprintf('Histogram of %d hemispheres at (%c%.0f,%.0f) deg',length(x),plusMinus,abs(t{ti(1),'eccentricityXYDeg'})));
ax=gca;
ax.FontSize=12;
yticks(unique(round(ax.YTick)));
if ax.YLim(2)>4
ax.YMinorTick='on';
end
end
if true
% Align x axes of radial and tangential histograms.
subplot(3,1,2)
ax=gca;
radialXLim=ax.XLim;
subplot(3,1,3)
ax=gca;
tangentialXLim=ax.XLim;
ax.XLim(1)=min([radialXLim(1) tangentialXLim(1)]);
ax.XLim(2)=max([radialXLim(2) tangentialXLim(2)]);
subplot(3,1,2)
ax=gca;
ax.XLim(1)=min([radialXLim(1) tangentialXLim(1)]);
ax.XLim(2)=max([radialXLim(2) tangentialXLim(2)]);
end
return
%% SAVE PLOT TO DISK
figureTitle='Histograms';
graphFile=fullfile(fileparts(mfilename('fullpath')),'data',[figureTitle '.eps']);
saveas(gcf,graphFile,'epsc')
graphFile=fullfile(fileparts(mfilename('fullpath')),'data',[figureTitle '.fig']);
saveas(gcf,graphFile)
fprintf('Figure saved as ''/data/%s.eps'' and ''/data/%s.fig''\n',figureTitle,figureTitle);
%% SAVE TO DISK AS CSV AND FIG FILES
printConditions=true;
saveSpreadsheet=true;
vars={'thresholdParameter' 'observer' 'eccentricityXYDeg' 'flankingDirection' ...
'experiment' 'experimenter' 'trialsDesired' 'contrast' ...
'targetDeg' 'spacingDeg' 'durationSec' ...
'viewingDistanceCm' 'dataFilename'};
t=struct2table(oo,'AsArray',true);
t=sortrows(t,{'thresholdParameter' 'observer' 'eccentricityXYDeg' });
dataFilename=[experiment '.csv'];
if saveSpreadsheet
spreadsheet=fullfile(fileparts(mfilename('fullpath')),'data',dataFilename);
writetable(t,spreadsheet);
fprintf('Spreadsheet saved as: /data/%s\n',dataFilename);
end
if printConditions
disp(t(:,vars));
end
end