work_log_run_mild_v102

perl somaticwrapper.pl --rdir /scratch1/fs1/dinglab/scao/sw/mildvep102 --log /scratch1/fs1/dinglab/scao/sw/mildvep102.log --ref  /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg  /storage1/fs1/songcao/Active/Database/smg_database/smg.lung.tsv --users songcao --groupname SomaticWXS --step 11 --sre 1

perl somaticwrapper.pl --rdir /scratch1/fs1/dinglab/scao/sw/mildvep102 --log /scratch1/fs1/dinglab/scao/sw/mildvep102.log --ref  /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg  /storage1/fs1/songcao/Active/Database/smg_database/smg.lung.tsv --users songcao --groupname SomaticWXS --step 12 --sre 1

perl somaticwrapper.pl --rdir /scratch1/fs1/dinglab/scao/sw/mildvep102 --log /scratch1/fs1/dinglab/scao/sw/mildvep102.log --ref  /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg  /storage1/fs1/songcao/Active/Database/smg_database/smg.lung.tsv --users songcao --groupname SomaticWXS --sre 1 --step 13 --sre 1

perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/mild/datafreeze/somatic.WXS/mildvep102  --log /storage1/fs1/dinglab/Active/Projects/scao/mild/datafreeze/somatic.WXS/mildvep102.log --ref  /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q dinglab --smg  /storage1/fs1/songcao/Active/Database/smg_database/smg.lung.tsv --users songcao --groupname SomaticWXS --sre 1 --step 12 --sre 1

perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/mild/datafreeze/somatic.WXS/mildvep102  --log /storage1/fs1/dinglab/Active/Projects/scao/mild/datafreeze/somatic.WXS/mildvep102.log --ref  /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q dinglab --smg  /storage1/fs1/songcao/Active/Database/smg_database/smg.lung.tsv --users songcao --groupname SomaticWXS --sre 1 --step 13 --sre 1