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Bed data link not working #4

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GangLiTarheel opened this issue Nov 8, 2023 · 2 comments
Open

Bed data link not working #4

GangLiTarheel opened this issue Nov 8, 2023 · 2 comments

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@GangLiTarheel
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GangLiTarheel commented Nov 8, 2023

Hi,
I am trying to download the data from link: https://bedbase.org/#/bedsplash/edc716833d4b5ee75c34a0692fc353d5
I get this link for the summary table: https://dozmorovlab.github.io/excluderanges/
But it seems it is not working. Could you fix the link for this? Or do you think it is a bedbase issue?
Thanks!

@mdozmorov
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@nsheff, could you please check? The HTTP download link from the landing page indeed don't work. And, API calls seem failing. I've tried wget http://bedbase.org/api/bed/edc716833d4b5ee75c34a0692fc353d5/file/bed -O mm39.excluderanges.bed.gz. It may be a global change, which download instructions we should adjust?

@GangLiTarheel, you can always download the data from Google Drive and access them in R.

@nsheff
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nsheff commented Nov 8, 2023

we're updating bedbase and it look like we broke the links on this version...

instead if https://data2.bedbase.org/ ... it should be http://data.bedbase.org/ ...

So it's here: http://data.bedbase.org/bed_files/mm39.excluderanges.bed.gz

I'll work on getting this fixed today

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