DESCRIPTION

Package: dynplot
Type: Package
Title: Visualising Single-Cell Trajectories
Version: 1.1.2
Authors@R: 
    c(person(given = "Robrecht",
             family = "Cannoodt",
             role = c("aut", "cre", "cph"),
             email = "rcannood@gmail.com",
             comment = c(ORCID = "0000-0003-3641-729X")),
      person(given = "Wouter",
             family = "Saelens",
             role = "aut",
             email = "wouter.saelens@ugent.be",
             comment = c(ORCID = "0000-0002-7114-6248")))
Description: Visualise a single-cell trajectory as a graph or dendrogram, 
  as a dimensionality reduction or heatmap of the expression data, 
  or a comparison between two trajectories as a pairwise scatterplot
  or dimensionality reduction projection. Saelens and Cannoodt et
  al. (2019) <doi:10.1038/s41587-019-0071-9>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/dynverse/dynplot
BugReports: https://github.com/dynverse/dynplot/issues
Depends:
  R (>= 3.0.0)
Imports:
  assertthat,
  dplyr,
  dynutils (>= 1.0.2),
  dynfeature (>= 1.0.0),
  dyndimred (>= 1.0.0),
  dynwrap (>= 1.0.0),
  GA,
  ggforce,
  ggplot2 (>= 3.0),
  ggraph (>= 2.0),
  ggrepel,
  igraph,
  MASS,
  methods,
  patchwork,
  purrr,
  reshape2,
  tibble,
  tidyr,
  tidygraph,
  vipor
Suggests:
  covr,
  hexbin,
  knitr,
  RColorBrewer,
  rje,
  rmarkdown,
  testthat (>= 3.0.0),
  uwot
VignetteBuilder: knitr
Collate: 
    'milestone_palette.R'
    'add_milestone_coloring.R'
    'add_cell_coloring.R'
    'add_density_coloring.R'
    'data.R'
    'dummy_proofing.R'
    'expect_ggplot.R'
    'is_colour_vector.R'
    'linearise_cells.R'
    'mix_colors.R'
    'optimize_order.R'
    'package.R'
    'plot_dendro.R'
    'project_waypoints.R'
    'plot_dimred.R'
    'plot_edge_flips.R'
    'plot_graph.R'
    'plot_heatmap.R'
    'plot_linearised_comparison.R'
    'plot_onedim.R'
    'plot_strip.R'
    'plot_topology.R'
    'theme_clean.R'
Roxygen: list(markdown = TRUE)