Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New terms request #4630

Open
Catriona-dot opened this issue Feb 1, 2025 · 0 comments
Open

New terms request #4630

Catriona-dot opened this issue Feb 1, 2025 · 0 comments

Comments

@Catriona-dot
Copy link

Hello,

Could you look at the four terms below in PMID: 39046578 please? 

Term Location Molecule Name

1/ Disaccharide 1 beta Scheme 1, Fig 1 α-D-GlcNAcp-(1 → 4)- β-D-(2,3-diNAc) ManAp
2/ Disaccharide 1 alpha Scheme 1, Fig 1 α-D-GlcNAcp-(1 → 4)- α-D-(2,3-diNAc) ManAp
3/ Trisaccharide 2 beta Scheme 9, Fig 1 α-D-GlcNAcp-(1 → 4)-β-D-(2,3-diNAc)ManAp-(1 → 3)- β-L-(4NMe)FucNAcp
4/ Pentasaccharide 5 Scheme 9, Fig 1 α-D-GlcNAcp- (1 → 4)˗ β-D-(2,3-diNAc) ManAp (1 → 3)˗ β-L-(4NMe)FucNAcp-(1 → 6) –[L-α˗D- Hepp-(1 → 4)] -α-D-GlcNp

They are Bordetella pertussis lipooligosaccharides.

https://pubmed.ncbi.nlm.nih.gov/39046578/

PMID_39046578.pdf

Do these structures exist in ChEBI already? 

If so, could you tell me their ChEBI IDs? If not, would you be able to create them?

This is needed for an IEDB curation.

Thanks,
Catriona

@ rvita

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant