CITATION.cff

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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "epiparameter" in publications use:'
type: software
license: MIT
title: 'epiparameter: Classes and Helper Functions for Working with Epidemiological
  Parameters'
version: 0.4.0.9000
doi: 10.5281/zenodo.11110881
identifiers:
- type: doi
  value: 10.32614/CRAN.package.epiparameter
- type: url
  value: https://epiverse-trace.github.io/epiparameter/
abstract: Classes and helper functions for loading, extracting, converting, manipulating,
  plotting and aggregating epidemiological parameters for infectious diseases. Epidemiological
  parameters extracted from the literature are loaded from the 'epiparameterDB' R
  package.
authors:
- family-names: Lambert
  given-names: Joshua W.
  email: joshua.lambert@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-5218-3046
- family-names: Kucharski
  given-names: Adam
  email: adam.kucharski@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-8814-9421
- family-names: Tamayo
  given-names: Carmen
  email: carmen.tamayo-cuartero@lshtm.ac.uk
  orcid: https://orcid.org/0000-0003-4184-2864
preferred-citation:
  type: manual
  title: 'epiparameter: Classes and Helper Functions for Working with Epidemiological
    Parameters'
  authors:
  - family-names: Lambert
    given-names: Joshua W.
    email: joshua.lambert@lshtm.ac.uk
    orcid: https://orcid.org/0000-0001-5218-3046
  - family-names: Kucharski
    given-names: Adam
    email: adam.kucharski@lshtm.ac.uk
    orcid: https://orcid.org/0000-0001-8814-9421
  - family-names: Tamayo
    given-names: Carmen
    email: carmen.tamayo-cuartero@lshtm.ac.uk
    orcid: https://orcid.org/0000-0003-4184-2864
  year: '2025'
  doi: 10.5281/zenodo.11110881
  url: https://epiverse-trace.github.io/epiparameter/
repository: https://CRAN.R-project.org/package=epiparameter
repository-code: https://github.com/epiverse-trace/epiparameter
url: https://github.com/epiverse-trace/epiparameter/
contact:
- family-names: Lambert
  given-names: Joshua W.
  email: joshua.lambert@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-5218-3046
keywords:
- data-access
- data-package
- epidemiology
- epiverse
- probability-distribution
- r
- r-package
references:
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
  version: '>= 4.1.0'
- type: software
  title: cachem
  abstract: 'cachem: Cache R Objects with Automatic Pruning'
  notes: Imports
  url: https://cachem.r-lib.org/
  repository: https://CRAN.R-project.org/package=cachem
  authors:
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.cachem
- type: software
  title: checkmate
  abstract: 'checkmate: Fast and Versatile Argument Checks'
  notes: Imports
  url: https://mllg.github.io/checkmate/
  repository: https://CRAN.R-project.org/package=checkmate
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  year: '2025'
  doi: 10.32614/CRAN.package.checkmate
- type: software
  title: cli
  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Imports
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.cli
- type: software
  title: distcrete
  abstract: 'distcrete: Discrete Distribution Approximations'
  notes: Imports
  url: https://github.com/reconhub/distcrete
  repository: https://CRAN.R-project.org/package=distcrete
  authors:
  - family-names: FitzJohn
    given-names: Rich
    email: rich.fitzjohn@gmail.com
  - family-names: Cori
    given-names: Anne
  - family-names: Jombart
    given-names: Thibaut
  year: '2025'
  doi: 10.32614/CRAN.package.distcrete
- type: software
  title: distributional
  abstract: 'distributional: Vectorised Probability Distributions'
  notes: Imports
  url: https://pkg.mitchelloharawild.com/distributional/
  repository: https://CRAN.R-project.org/package=distributional
  authors:
  - family-names: O'Hara-Wild
    given-names: Mitchell
    email: mail@mitchelloharawild.com
    orcid: https://orcid.org/0000-0001-6729-7695
  - family-names: Kay
    given-names: Matthew
    orcid: https://orcid.org/0000-0001-9446-0419
  - family-names: Hayes
    given-names: Alex
    orcid: https://orcid.org/0000-0002-4985-5160
  - family-names: Hyndman
    given-names: Rob
    orcid: https://orcid.org/0000-0002-2140-5352
  year: '2025'
  doi: 10.32614/CRAN.package.distributional
- type: software
  title: epiparameterDB
  abstract: 'epiparameterDB: Database of Epidemiological Parameters'
  notes: Imports
  url: https://github.com/epiverse-trace/epiparameterDB/
  repository: https://CRAN.R-project.org/package=epiparameterDB
  authors:
  - family-names: Lambert
    given-names: Joshua W.
    email: joshua.lambert@lshtm.ac.uk
    orcid: https://orcid.org/0000-0001-5218-3046
  - family-names: Kucharski
    given-names: Adam
    email: adam.kucharski@lshtm.ac.uk
    orcid: https://orcid.org/0000-0001-8814-9421
  - family-names: Tamayo
    given-names: Carmen
    email: carmen.tamayo-cuartero@lshtm.ac.uk
    orcid: https://orcid.org/0000-0003-4184-2864
  year: '2025'
  doi: 10.32614/CRAN.package.epiparameterDB
- type: software
  title: graphics
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: lifecycle
  abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
  notes: Imports
  url: https://lifecycle.r-lib.org/
  repository: https://CRAN.R-project.org/package=lifecycle
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  year: '2025'
  doi: 10.32614/CRAN.package.lifecycle
- type: software
  title: pillar
  abstract: 'pillar: Coloured Formatting for Columns'
  notes: Imports
  url: https://pillar.r-lib.org/
  repository: https://CRAN.R-project.org/package=pillar
  authors:
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Wickham
    given-names: Hadley
  year: '2025'
  doi: 10.32614/CRAN.package.pillar
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: tools
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: bookdown
  abstract: 'bookdown: Authoring Books and Technical Documents with R Markdown'
  notes: Suggests
  url: https://pkgs.rstudio.com/bookdown/
  repository: https://CRAN.R-project.org/package=bookdown
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.bookdown
- type: software
  title: DT
  abstract: 'DT: A Wrapper of the JavaScript Library ''DataTables'''
  notes: Suggests
  url: https://github.com/rstudio/DT
  repository: https://CRAN.R-project.org/package=DT
  authors:
  - family-names: Xie
    given-names: Yihui
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Tan
    given-names: Xianying
  year: '2025'
  doi: 10.32614/CRAN.package.DT
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Suggests
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2025'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: RColorBrewer
  abstract: 'RColorBrewer: ColorBrewer Palettes'
  notes: Suggests
  repository: https://CRAN.R-project.org/package=RColorBrewer
  authors:
  - family-names: Neuwirth
    given-names: Erich
    email: erich.neuwirth@univie.ac.at
  year: '2025'
  doi: 10.32614/CRAN.package.RColorBrewer
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://ropensci.r-universe.dev/spelling
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: Hester
    given-names: Jim
    email: james.hester@rstudio.com
  year: '2025'
  doi: 10.32614/CRAN.package.spelling
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: vdiffr
  abstract: 'vdiffr: Visual Regression Testing and Graphical Diffing'
  notes: Suggests
  url: https://vdiffr.r-lib.org/
  repository: https://CRAN.R-project.org/package=vdiffr
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Luciani
    given-names: T Jake
    email: jake@apache.org
  - family-names: Decorde
    given-names: Matthieu
    email: matthieu.decorde@ens-lyon.fr
  - family-names: Lise
    given-names: Vaudor
    email: lise.vaudor@ens-lyon.fr
  year: '2025'
  doi: 10.32614/CRAN.package.vdiffr
  version: '>= 1.0.7'
- type: software
  title: visNetwork
  abstract: 'visNetwork: Network Visualization using ''vis.js'' Library'
  notes: Suggests
  url: https://datastorm-open.github.io/visNetwork/
  repository: https://CRAN.R-project.org/package=visNetwork
  authors:
  - name: Almende B.V. and Contributors
    website: https://visjs.org/
  - family-names: Thieurmel
    given-names: Benoit
    email: bthieurmel@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.visNetwork