From 10de079605b1ead9c79c6c612e6a048fdf1ec9f7 Mon Sep 17 00:00:00 2001 From: Martin Fenner Date: Thu, 7 Dec 2023 17:46:16 +0100 Subject: [PATCH] build docs site --- docs/_quarto.yml | 26 +- docs/_site/favicon.ico | Bin 0 -> 1150 bytes docs/_site/images/icon.png | Bin 0 -> 6068 bytes docs/_site/index.html | 198 +++-- docs/_site/readers/bibtex_reader.html | 802 +++++++++++++++++ docs/_site/search.json | 72 +- .../bootstrap/bootstrap-dark.min.css | 2 +- .../site_libs/bootstrap/bootstrap.min.css | 2 +- .../quarto-syntax-highlighting-dark.css | 134 ++- .../quarto-syntax-highlighting.css | 222 +++-- docs/_site/utils/doi_utils.html | 787 +++++++++++++++++ docs/_site/writers/bibtex_writer.html | 803 ++++++++++++++++++ docs/favicon.ico | Bin 0 -> 1150 bytes docs/images/icon.png | Bin 0 -> 6068 bytes docs/index.qmd | 77 +- docs/readers/bibtex_reader.ipynb | 37 + docs/utils/doi_utils.ipynb | 28 + docs/writers/bibtex_writer.ipynb | 39 + 18 files changed, 2935 insertions(+), 294 deletions(-) create mode 100644 docs/_site/favicon.ico create mode 100644 docs/_site/images/icon.png create mode 100644 docs/_site/readers/bibtex_reader.html create mode 100644 docs/_site/utils/doi_utils.html create mode 100644 docs/_site/writers/bibtex_writer.html create mode 100644 docs/favicon.ico create mode 100644 docs/images/icon.png create mode 100644 docs/readers/bibtex_reader.ipynb create mode 100644 docs/utils/doi_utils.ipynb create mode 100644 docs/writers/bibtex_writer.ipynb diff --git a/docs/_quarto.yml b/docs/_quarto.yml index ca4a13af..7b7cad78 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -7,13 +7,24 @@ execute: freeze: true website: title: "commonmeta-ruby" + favicon: favicon.ico + bread-crumbs: false navbar: - left: - - href: index.qmd - text: Guide - tools: + background: light + logo: "/images/icon.png" + logo-alt: "commonmeta-py" + right: - icon: github href: https://github.com/front-matter/commonmeta-ruby + sidebar: + contents: + - index.qmd + - section: "Readers" + contents: "readers/*.ipynb" + - section: "Writers" + contents: "writers/*.ipynb" + - section: "Utils" + contents: "utils/*.ipynb" page-footer: left: "Copyright ©2023 Front Matter." right: @@ -27,6 +38,9 @@ format: theme: light: [flatly, theme.scss] dark: [darkly, theme.scss] - page-layout: article + code-fold: false + code-block-bg: true + code-block-border-left: "#38a169" + highlight-style: github toc: true - toc-location: left + toc-location: right diff --git a/docs/_site/favicon.ico b/docs/_site/favicon.ico new file mode 100644 index 0000000000000000000000000000000000000000..b1aad2bae1ac5e0cd53f3ba9ffde89cb644ede75 GIT binary patch literal 1150 zcmb7EO-NKx6uv?G#D!oHNhulGLMTL9NI^-PprVp??Mx#holM1ktwddnKj}ik5JCxZ z;X<$yD(D9ltVK-o-u#crOyg4re`cJ&&-3nmH{v;tbszU$?m74S&UenaJjQm=mzBk6 z&10228Ovde71AUVS%jT7#>i(L_wSUKpG~u0z;BB{t56>4da`!i!lWQWr;oma8#D9yR>%0$x)pO{-`U}$|VGh|g ze*>?6Swnld2Q9~4czVK38iE2J&)fjX|8-~yJ(v8rchrfl3qEw7^Zn@|wxE!;4S8aC zSn7iHtPeMG?P#U=_m4R-Yzbtnfs8#|7eLK!JKl6^ymzCILl~+JpmLWD-^Z5I*TK+~ zp!`}-x^Zitf^O3N;@TXaZKph3OK*i=XfWjPE1S3882${6f_)mpy80p=N;O0jwfYq#3BaJgij`fVca^8s%#sYjyO|3mOs`)gB^1P?DfC^L#r2$@xLqLdmVAYur(S1%N3sr4s>5hY2oFkJ(6#IR RoakE+0Zh8h|AYTMZve&Jj@AGG literal 0 HcmV?d00001 diff --git a/docs/_site/images/icon.png b/docs/_site/images/icon.png new file mode 100644 index 0000000000000000000000000000000000000000..2757f7fb552efe21c8b3feab07e7039dae11bbd1 GIT binary patch literal 6068 zcmXw7XH*ki6AqzC6Qp;PW)MP`W)KNYnjlr0(h_yVn9hMWxdKwsY%k?J@i zsNpf3S#OFHR*wqa8ZQt2dc5{9wWcwr@bh3DWdxZGtcEo?1?=G%olAh+O;K+1$8CrI zR4og|QTjm2epr}u?3_n&@x+7V;;ja*UNfrQy7}G=?Bwd_mz{8eh#rc!GV^$`?Zl0Gt|YDhY^184 z!=L})sIoHU$jF?o+|HQIyHJv%DJ4vsGTVIq*zj5gN)am)7eA$=NG^Lism_?wSO^WD z54@z%PpQIq8h>_9rnjPv(Xz|<;TE5@tUOj@C%Ch-Gh1fZvuib`bCTs#*HesEs@x94C<16) z+hekn+g#Kxc-Np|<~=`vt%3P=*jHPSjUN`#Hfgd|K(~h;^L+0Z$R&9M`vZ{ zy8adRJE3E}sLiX*UI(ze?Byggit=ZvUju2JljQS~V!SbpZ`@#800VY!=E&J@tT5 z<*MDN>B0d8DxPFlOHlJuhBMfTq=ii%Q+ia4p$VttSgPw(RO0MIREfyM$i$cwIy<{! 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Guide

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DOI Gem Version Coverage Maintainability Rating GitHub

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commonmeta-ruby

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Ruby gem and command-line utility for the conversion of scholarly metadata, including schema.org. Based on the bolognese gem, but using commonmeta as the intermediate format, and supporting additional metadata formats. A Python version is available at commonmeta-py.

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+ + + +
+ + +

DOI Gem Version GitHub

+

commonmeta-ruby is a Ruby gem and command-line utility for the conversion of scholarly metadata, including schema.org. Based on the bolognese gem, but using commonmeta as the intermediate format, and supporting additional metadata formats. A Python version is available at commonmeta-py.

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+

Installation

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Requires Ruby 3.0 or later (Ruby 2.x has reached its end of life March 2023). Then add the following to your Gemfile to install the latest version:

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gem 'commonmeta-ruby'
+

Then run bundle install to install into your environment.

+

You can also install the gem system-wide in the usual way:

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gem install commonmeta-ruby
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+
+

Commands

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Run the commonmeta command with either an identifier (DOI or URL) or filename:

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commonmeta https://doi.org/10.7554/elife.01567
+
commonmeta example.xml
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commonmeta can read BibTeX files (file extension .bib), RIS files (file extension .ris), Crossref files (file extension .xml), DataCite files and CSL-JSON files.

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The input format (e.g. Crossref or BibteX) is automatically detected, but you can also provide the format with the --from or -f flag. The supported input formats are listed in the table above.

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The output format is determined by the --to or -t flag, and defaults to schema_org.

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Show all commands with commonmeta help:

+
Commands:
+  commonmeta                 # convert metadata
+  commonmeta --version, -v   # print the version
+  commonmeta help [COMMAND]  # Describe available commands or one specific command
+
+
+

Errors

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Errors are returned to STDOUT.

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All input is validated against the commonmeta JSON schema.

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Supported Metadata Formats

commonmeta-ruby reads and/or writes these metadata formats:

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Supported Metad -

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Installation

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Requires Ruby 3.0 or later (Ruby 2.x has reached its end of life March 2023). Then add the following to your Gemfile to install the latest version:

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gem 'commonmeta-ruby'
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Then run bundle install to install into your environment.

-

You can also install the gem system-wide in the usual way:

-
gem install commonmeta-ruby
-
diff --git a/docs/_site/readers/bibtex_reader.html b/docs/_site/readers/bibtex_reader.html new file mode 100644 index 00000000..5b032954 --- /dev/null +++ b/docs/_site/readers/bibtex_reader.html @@ -0,0 +1,802 @@ + + + + + + + + + + +commonmeta-ruby - BibTex Reader + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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+ + + +
+ +
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BibTex Reader

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+ +
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This notebook shows how to read metadata in BibTex format.

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+ + + +
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Fetch the metadata

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Copyright ©2023 Front Matter.

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+
+
+ + + + + \ No newline at end of file diff --git a/docs/_site/search.json b/docs/_site/search.json index 55d391ad..ad11099f 100644 --- a/docs/_site/search.json +++ b/docs/_site/search.json @@ -1,16 +1,74 @@ [ { - "objectID": "index.html#supported-metadata-formats", - "href": "index.html#supported-metadata-formats", - "title": "commonmeta-ruby", - "section": "Supported Metadata Formats", - "text": "Supported Metadata Formats\ncommonmeta-ruby reads and/or writes these metadata formats:\n\n\n\nFormat\nName\nContent Type\nRead\nWrite\n\n\n\n\nCommonmeta\ncommonmeta\napplication/vnd.commonmeta+json\nyes\nyes\n\n\nCrossRef Unixref XML\ncrossref\napplication/vnd.crossref.unixref+xml\nyes\nyes\n\n\nCrossref\ncrossref\napplication/vnd.crossref+json\nyes\nno\n\n\nDataCite\ndatacite\napplication/vnd.datacite.datacite+json\nyes\nyes\n\n\nSchema.org (in JSON-LD)\nschema_org\napplication/vnd.schemaorg.ld+json\nyes\nyes\n\n\nRDF XML\nrdf_xml\napplication/rdf+xml\nno\nyes\n\n\nRDF Turtle\nturtle\ntext/turtle\nno\nyes\n\n\nCSL-JSON\ncsl\napplication/vnd.citationstyles.csl+json\nyes\nyes\n\n\nFormatted text citation\ncitation\ntext/x-bibliography\nno\nyes\n\n\nCodemeta\ncodemeta\napplication/vnd.codemeta.ld+json\nyes\nyes\n\n\nCitation File Format (CFF)\ncff\napplication/vnd.cff+yaml\nyes\nyes\n\n\nJATS\njats\napplication/vnd.jats+xml\nno\nyes\n\n\nCSV\ncsv\ntext/csv\nno\nyes\n\n\nBibTex\nbibtex\napplication/x-bibtex\nyes\nyes\n\n\nRIS\nris\napplication/x-research-info-systems\nyes\nyes" + "objectID": "writers/bibtex_writer.html", + "href": "writers/bibtex_writer.html", + "title": "BibTex Writer", + "section": "", + "text": "As with all commonmeta-ruby notebooks, we start by fetching metadata, in this example a journal article via its Crossref DOI, and then convert it to the commonmeta format.", + "crumbs": [ + "Writers", + "BibTex Writer" + ] + }, + { + "objectID": "writers/bibtex_writer.html#fetch-the-metadata", + "href": "writers/bibtex_writer.html#fetch-the-metadata", + "title": "BibTex Writer", + "section": "", + "text": "As with all commonmeta-ruby notebooks, we start by fetching metadata, in this example a journal article via its Crossref DOI, and then convert it to the commonmeta format.", + "crumbs": [ + "Writers", + "BibTex Writer" + ] + }, + { + "objectID": "index.html", + "href": "index.html", + "title": "Guide", + "section": "", + "text": "commonmeta-ruby is a Ruby gem and command-line utility for the conversion of scholarly metadata, including schema.org. Based on the bolognese gem, but using commonmeta as the intermediate format, and supporting additional metadata formats. A Python version is available at commonmeta-py.", + "crumbs": [ + "Guide" + ] }, { "objectID": "index.html#installation", "href": "index.html#installation", - "title": "commonmeta-ruby", + "title": "Guide", "section": "Installation", - "text": "Installation\nRequires Ruby 3.0 or later (Ruby 2.x has reached its end of life March 2023). Then add the following to your Gemfile to install the latest version:\ngem 'commonmeta-ruby'\nThen run bundle install to install into your environment.\nYou can also install the gem system-wide in the usual way:\ngem install commonmeta-ruby" + "text": "Installation\nRequires Ruby 3.0 or later (Ruby 2.x has reached its end of life March 2023). Then add the following to your Gemfile to install the latest version:\ngem 'commonmeta-ruby'\nThen run bundle install to install into your environment.\nYou can also install the gem system-wide in the usual way:\ngem install commonmeta-ruby", + "crumbs": [ + "Guide" + ] + }, + { + "objectID": "index.html#commands", + "href": "index.html#commands", + "title": "Guide", + "section": "Commands", + "text": "Commands\nRun the commonmeta command with either an identifier (DOI or URL) or filename:\ncommonmeta https://doi.org/10.7554/elife.01567\ncommonmeta example.xml\ncommonmeta can read BibTeX files (file extension .bib), RIS files (file extension .ris), Crossref files (file extension .xml), DataCite files and CSL-JSON files.\nThe input format (e.g. Crossref or BibteX) is automatically detected, but you can also provide the format with the --from or -f flag. The supported input formats are listed in the table above.\nThe output format is determined by the --to or -t flag, and defaults to schema_org.\nShow all commands with commonmeta help:\nCommands:\n commonmeta # convert metadata\n commonmeta --version, -v # print the version\n commonmeta help [COMMAND] # Describe available commands or one specific command", + "crumbs": [ + "Guide" + ] + }, + { + "objectID": "index.html#errors", + "href": "index.html#errors", + "title": "Guide", + "section": "Errors", + "text": "Errors\nErrors are returned to STDOUT.\nAll input is validated against the commonmeta JSON schema.", + "crumbs": [ + "Guide" + ] + }, + { + "objectID": "index.html#supported-metadata-formats", + "href": "index.html#supported-metadata-formats", + "title": "Guide", + "section": "Supported Metadata Formats", + "text": "Supported Metadata Formats\ncommonmeta-ruby reads and/or writes these metadata formats:\n\n\n\nFormat\nName\nContent Type\nRead\nWrite\n\n\n\n\nCommonmeta\ncommonmeta\napplication/vnd.commonmeta+json\nyes\nyes\n\n\nCrossRef Unixref XML\ncrossref\napplication/vnd.crossref.unixref+xml\nyes\nyes\n\n\nCrossref\ncrossref\napplication/vnd.crossref+json\nyes\nno\n\n\nDataCite\ndatacite\napplication/vnd.datacite.datacite+json\nyes\nyes\n\n\nSchema.org (in JSON-LD)\nschema_org\napplication/vnd.schemaorg.ld+json\nyes\nyes\n\n\nRDF XML\nrdf_xml\napplication/rdf+xml\nno\nyes\n\n\nRDF Turtle\nturtle\ntext/turtle\nno\nyes\n\n\nCSL-JSON\ncsl\napplication/vnd.citationstyles.csl+json\nyes\nyes\n\n\nFormatted text citation\ncitation\ntext/x-bibliography\nno\nyes\n\n\nCodemeta\ncodemeta\napplication/vnd.codemeta.ld+json\nyes\nyes\n\n\nCitation File Format (CFF)\ncff\napplication/vnd.cff+yaml\nyes\nyes\n\n\nJATS\njats\napplication/vnd.jats+xml\nno\nyes\n\n\nCSV\ncsv\ntext/csv\nno\nyes\n\n\nBibTex\nbibtex\napplication/x-bibtex\nyes\nyes\n\n\nRIS\nris\napplication/x-research-info-systems\nyes\nyes", + "crumbs": [ + 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minmax(500px, calc(1000px - 3em)) [body-content-end] 1.5em [body-end body-end-outset page-end-inset page-end] 5fr [screen-end-inset] 1.5em [screen-end]}body.floating.fullcontent .page-columns{display:grid;gap:0;grid-template-columns:[screen-start] 1.5em [screen-start-inset] 5fr [page-start page-start-inset body-start-outset body-start] 1em [body-content-start] minmax(500px, calc(800px - 3em)) [body-content-end] 1.5em [body-end body-end-outset page-end-inset page-end] 4fr [screen-end-inset] 1.5em [screen-end]}body.docked.slimcontent .page-columns{display:grid;gap:0;grid-template-columns:[screen-start] 1.5em [screen-start-inset page-start page-start-inset body-start-outset body-start body-content-start] minmax(500px, calc(750px - 3em)) [body-content-end] 1.5em [body-end] 50px [body-end-outset] minmax(25px, 50px) [page-end-inset] 50px [page-end] 5fr [screen-end-inset] 1.5em [screen-end]}body.docked.listing .page-columns{display:grid;gap:0;grid-template-columns:[screen-start] 1.5em 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body-end-outset page-end-inset page-end screen-end-inset] 1.5em [screen-end]}body:not(.floating):not(.docked) .page-columns.toc-left .page-columns{display:grid;gap:0;grid-template-columns:[screen-start] 1.5em [screen-start-inset page-start page-start-inset body-start-outset body-start body-content-start] minmax(0px, 1fr) [body-content-end body-end body-end-outset page-end-inset page-end screen-end-inset] 1.5em [screen-end]}nav[role=doc-toc]{display:none}}body,.page-row-navigation{grid-template-rows:[page-top] max-content [contents-top] max-content [contents-bottom] max-content [page-bottom]}.page-rows-contents{grid-template-rows:[content-top] minmax(max-content, 1fr) [content-bottom] minmax(60px, max-content) [page-bottom]}.page-full{grid-column:screen-start/screen-end 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.btn-close,.offcanvas .btn-close{background-image:url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%23000'%3e%3cpath d='M.293.293a1 1 0 0 1 1.414 0L8 6.586 14.293.293a1 1 0 1 1 1.414 1.414L9.414 8l6.293 6.293a1 1 0 0 1-1.414 1.414L8 9.414l-6.293 6.293a1 1 0 0 1-1.414-1.414L6.586 8 .293 1.707a1 1 0 0 1 0-1.414z'/%3e%3c/svg%3e")} diff --git a/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting-dark.css b/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting-dark.css index 343d2f80..3676fae4 100644 --- a/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting-dark.css +++ b/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting-dark.css @@ -1,35 +1,34 @@ /* quarto syntax highlight colors */ :root { - --quarto-hl-al-color: #f07178; - --quarto-hl-an-color: #d4d0ab; - --quarto-hl-at-color: #00e0e0; - --quarto-hl-bn-color: #d4d0ab; - --quarto-hl-bu-color: #abe338; - --quarto-hl-ch-color: #abe338; - --quarto-hl-co-color: #f8f8f2; - --quarto-hl-cv-color: #ffd700; - --quarto-hl-cn-color: #ffd700; - --quarto-hl-cf-color: #ffa07a; - --quarto-hl-dt-color: #ffa07a; - --quarto-hl-dv-color: #d4d0ab; - --quarto-hl-do-color: #f8f8f2; - --quarto-hl-er-color: #f07178; - --quarto-hl-ex-color: #00e0e0; - --quarto-hl-fl-color: #d4d0ab; - --quarto-hl-fu-color: #ffa07a; - --quarto-hl-im-color: #abe338; - --quarto-hl-in-color: #d4d0ab; - --quarto-hl-kw-color: #ffa07a; - --quarto-hl-op-color: #ffa07a; - --quarto-hl-ot-color: #00e0e0; - --quarto-hl-pp-color: #dcc6e0; - --quarto-hl-re-color: #00e0e0; - --quarto-hl-sc-color: #abe338; - --quarto-hl-ss-color: #abe338; - --quarto-hl-st-color: #abe338; - --quarto-hl-va-color: #00e0e0; - --quarto-hl-vs-color: #abe338; - --quarto-hl-wa-color: #dcc6e0; + --quarto-hl-al-color: #ff5555; + --quarto-hl-an-color: #6a737d; + --quarto-hl-at-color: #f97583; + --quarto-hl-bn-color: #79b8ff; + --quarto-hl-bu-color: #f97583; + --quarto-hl-ch-color: #9ecbff; + --quarto-hl-co-color: #6a737d; + --quarto-hl-cv-color: #6a737d; + --quarto-hl-cn-color: #79b8ff; + --quarto-hl-cf-color: #f97583; + --quarto-hl-dt-color: #f97583; + --quarto-hl-dv-color: #79b8ff; + --quarto-hl-do-color: #6a737d; + --quarto-hl-er-color: #ff5555; + --quarto-hl-ex-color: #f97583; + --quarto-hl-fl-color: #79b8ff; + --quarto-hl-fu-color: #b392f0; + --quarto-hl-im-color: #9ecbff; + --quarto-hl-in-color: #6a737d; + --quarto-hl-kw-color: #f97583; + --quarto-hl-op-color: #e1e4e8; + --quarto-hl-pp-color: #f97583; + --quarto-hl-re-color: #6a737d; + --quarto-hl-sc-color: #79b8ff; + --quarto-hl-ss-color: #9ecbff; + --quarto-hl-st-color: #9ecbff; + --quarto-hl-va-color: #ffab70; + --quarto-hl-vs-color: #9ecbff; + --quarto-hl-wa-color: #ff5555; } /* other quarto variables */ @@ -38,148 +37,139 @@ } code span.al { - background-color: #2a0f15; font-weight: bold; - color: #f07178; + color: #ff5555; } code span.an { - color: #d4d0ab; + color: #6a737d; } code span.at { - color: #00e0e0; + color: #f97583; } code span.bn { - color: #d4d0ab; + color: #79b8ff; } code span.bu { - color: #abe338; + color: #f97583; } code span.ch { - color: #abe338; + color: #9ecbff; } code span.co { - font-style: italic; - color: #f8f8f2; + color: #6a737d; } code span.cv { - color: #ffd700; + color: #6a737d; } code span.cn { - color: #ffd700; + color: #79b8ff; } code span.cf { - font-weight: bold; - color: #ffa07a; + color: #f97583; } code span.dt { - color: #ffa07a; + color: #f97583; } code span.dv { - color: #d4d0ab; + color: #79b8ff; } code span.do { - color: #f8f8f2; + color: #6a737d; } code span.er { - color: #f07178; + color: #ff5555; text-decoration: underline; } code span.ex { font-weight: bold; - color: #00e0e0; + color: #f97583; } code span.fl { - color: #d4d0ab; + color: #79b8ff; } code span.fu { - color: #ffa07a; + color: #b392f0; } code span.im { - color: #abe338; + color: #9ecbff; } code span.in { - color: #d4d0ab; + color: #6a737d; } code span.kw { - font-weight: bold; - color: #ffa07a; + color: #f97583; } pre > code.sourceCode > span { - color: #f8f8f2; + color: #e1e4e8; } code span { - color: #f8f8f2; + color: #e1e4e8; } code.sourceCode > span { - color: #f8f8f2; + color: #e1e4e8; } div.sourceCode, div.sourceCode pre.sourceCode { - color: #f8f8f2; + color: #e1e4e8; } code span.op { - color: #ffa07a; -} - -code span.ot { - color: #00e0e0; + color: #e1e4e8; } code span.pp { - color: #dcc6e0; + color: #f97583; } code span.re { - background-color: #f8f8f2; - color: #00e0e0; + color: #6a737d; } code span.sc { - color: #abe338; + color: #79b8ff; } code span.ss { - color: #abe338; + color: #9ecbff; } code span.st { - color: #abe338; + color: #9ecbff; } code span.va { - color: #00e0e0; + color: #ffab70; } code span.vs { - color: #abe338; + color: #9ecbff; } code span.wa { - color: #dcc6e0; + color: #ff5555; } .prevent-inlining { diff --git a/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting.css b/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting.css index d9fd98f0..a3dab6c5 100644 --- a/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting.css +++ b/docs/_site/site_libs/quarto-html/quarto-syntax-highlighting.css @@ -1,34 +1,34 @@ /* quarto syntax highlight colors */ :root { - --quarto-hl-ot-color: #003B4F; - --quarto-hl-at-color: #657422; - --quarto-hl-ss-color: #20794D; - --quarto-hl-an-color: #5E5E5E; - --quarto-hl-fu-color: #4758AB; - --quarto-hl-st-color: #20794D; - --quarto-hl-cf-color: #003B4F; - --quarto-hl-op-color: #5E5E5E; - --quarto-hl-er-color: #AD0000; - --quarto-hl-bn-color: #AD0000; - --quarto-hl-al-color: #AD0000; - --quarto-hl-va-color: #111111; - --quarto-hl-bu-color: inherit; - --quarto-hl-ex-color: inherit; - --quarto-hl-pp-color: #AD0000; - --quarto-hl-in-color: #5E5E5E; - --quarto-hl-vs-color: #20794D; - --quarto-hl-wa-color: #5E5E5E; - --quarto-hl-do-color: #5E5E5E; - --quarto-hl-im-color: #00769E; - --quarto-hl-ch-color: #20794D; - --quarto-hl-dt-color: #AD0000; - --quarto-hl-fl-color: #AD0000; - --quarto-hl-co-color: #5E5E5E; - --quarto-hl-cv-color: #5E5E5E; - --quarto-hl-cn-color: #8f5902; - --quarto-hl-sc-color: #5E5E5E; - --quarto-hl-dv-color: #AD0000; - --quarto-hl-kw-color: #003B4F; + --quarto-hl-al-color: #ff5555; + --quarto-hl-an-color: #6a737d; + --quarto-hl-at-color: #d73a49; + --quarto-hl-bn-color: #005cc5; + --quarto-hl-bu-color: #d73a49; + --quarto-hl-ch-color: #032f62; + --quarto-hl-co-color: #6a737d; + --quarto-hl-cv-color: #6a737d; + --quarto-hl-cn-color: #005cc5; + --quarto-hl-cf-color: #d73a49; + --quarto-hl-dt-color: #d73a49; + --quarto-hl-dv-color: #005cc5; + --quarto-hl-do-color: #6a737d; + --quarto-hl-er-color: #ff5555; + --quarto-hl-ex-color: #d73a49; + --quarto-hl-fl-color: #005cc5; + --quarto-hl-fu-color: #6f42c1; + --quarto-hl-im-color: #032f62; + --quarto-hl-in-color: #6a737d; + --quarto-hl-kw-color: #d73a49; + --quarto-hl-op-color: #24292e; + --quarto-hl-pp-color: #d73a49; + --quarto-hl-re-color: #6a737d; + --quarto-hl-sc-color: #005cc5; + --quarto-hl-ss-color: #032f62; + --quarto-hl-st-color: #032f62; + --quarto-hl-va-color: #e36209; + --quarto-hl-vs-color: #032f62; + --quarto-hl-wa-color: #ff5555; } /* other quarto variables */ @@ -36,164 +36,140 @@ --quarto-font-monospace: SFMono-Regular, Menlo, Monaco, Consolas, "Liberation Mono", "Courier New", monospace; } -pre > code.sourceCode > span { - color: #003B4F; -} - -code span { - color: #003B4F; +code span.al { + font-weight: bold; + color: #ff5555; } -code.sourceCode > span { - color: #003B4F; +code span.an { + color: #6a737d; } -div.sourceCode, -div.sourceCode pre.sourceCode { - color: #003B4F; +code span.at { + color: #d73a49; } -code span.ot { - color: #003B4F; - font-style: inherit; +code span.bn { + color: #005cc5; } -code span.at { - color: #657422; - font-style: inherit; +code span.bu { + color: #d73a49; } -code span.ss { - color: #20794D; - font-style: inherit; +code span.ch { + color: #032f62; } -code span.an { - color: #5E5E5E; - font-style: inherit; +code span.co { + color: #6a737d; } -code span.fu { - color: #4758AB; - font-style: inherit; +code span.cv { + color: #6a737d; } -code span.st { - color: #20794D; - font-style: inherit; +code span.cn { + color: #005cc5; } code span.cf { - color: #003B4F; - font-style: inherit; + color: #d73a49; } -code span.op { - color: #5E5E5E; - font-style: inherit; +code span.dt { + color: #d73a49; } -code span.er { - color: #AD0000; - font-style: inherit; +code span.dv { + color: #005cc5; } -code span.bn { - color: #AD0000; - font-style: inherit; +code span.do { + color: #6a737d; } -code span.al { - color: #AD0000; - font-style: inherit; +code span.er { + color: #ff5555; + text-decoration: underline; } -code span.va { - color: #111111; - font-style: inherit; +code span.ex { + font-weight: bold; + color: #d73a49; } -code span.bu { - font-style: inherit; +code span.fl { + color: #005cc5; } -code span.ex { - font-style: inherit; +code span.fu { + color: #6f42c1; } -code span.pp { - color: #AD0000; - font-style: inherit; +code span.im { + color: #032f62; } code span.in { - color: #5E5E5E; - font-style: inherit; + color: #6a737d; } -code span.vs { - color: #20794D; - font-style: inherit; +code span.kw { + color: #d73a49; } -code span.wa { - color: #5E5E5E; - font-style: italic; +pre > code.sourceCode > span { + color: #24292e; } -code span.do { - color: #5E5E5E; - font-style: italic; +code span { + color: #24292e; } -code span.im { - color: #00769E; - font-style: inherit; +code.sourceCode > span { + color: #24292e; } -code span.ch { - color: #20794D; - font-style: inherit; +div.sourceCode, +div.sourceCode pre.sourceCode { + color: #24292e; } -code span.dt { - color: #AD0000; - font-style: inherit; +code span.op { + color: #24292e; } -code span.fl { - color: #AD0000; - font-style: inherit; +code span.pp { + color: #d73a49; } -code span.co { - color: #5E5E5E; - font-style: inherit; +code span.re { + color: #6a737d; } -code span.cv { - color: #5E5E5E; - font-style: italic; +code span.sc { + color: #005cc5; } -code span.cn { - color: #8f5902; - font-style: inherit; +code span.ss { + color: #032f62; } -code span.sc { - color: #5E5E5E; - font-style: inherit; +code span.st { + color: #032f62; } -code span.dv { - color: #AD0000; - font-style: inherit; +code span.va { + color: #e36209; } -code span.kw { - color: #003B4F; - font-style: inherit; +code span.vs { + color: #032f62; +} + +code span.wa { + color: #ff5555; } .prevent-inlining { diff --git a/docs/_site/utils/doi_utils.html b/docs/_site/utils/doi_utils.html new file mode 100644 index 00000000..41df2a02 --- /dev/null +++ b/docs/_site/utils/doi_utils.html @@ -0,0 +1,787 @@ + + + + + + + + + +commonmeta-ruby - doi_utils + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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doi_utils

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Copyright ©2023 Front Matter.

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+ + + + + \ No newline at end of file diff --git a/docs/_site/writers/bibtex_writer.html b/docs/_site/writers/bibtex_writer.html new file mode 100644 index 00000000..e1117613 --- /dev/null +++ b/docs/_site/writers/bibtex_writer.html @@ -0,0 +1,803 @@ + + + + + + + + + + +commonmeta-ruby - BibTex Writer + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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BibTex Writer

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This notebook shows how to generate BibTex metadata from a scholarly resource in commonmeta format generated by commonmeta-ruby.

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Fetch the metadata

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As with all commonmeta-ruby notebooks, we start by fetching metadata, in this example a journal article via its Crossref DOI, and then convert it to the commonmeta format.

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Copyright ©2023 Front Matter.

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-[![Coverage](https://sonarcloud.io/api/project_badges/measure?project=front-matter_commonmeta-ruby&metric=coverage)](https://sonarcloud.io/summary/new_code?id=front-matter_commonmeta-ruby) -[![Maintainability Rating](https://sonarcloud.io/api/project_badges/measure?project=front-matter_commonmeta-ruby&metric=sqale_rating)](https://sonarcloud.io/summary/new_code?id=front-matter_commonmeta-ruby) ![GitHub](https://img.shields.io/github/license/front-matter/commonmeta-ruby?logo=MIT) -# commonmeta-ruby +commonmeta-ruby is a Ruby gem and command-line utility for the conversion of scholarly metadata, including [schema.org](https://schema.org). Based on the [bolognese](https://github.com/datacite/bolognese) gem, but using [commonmeta](https://commonmeta.org) as the intermediate format, and supporting additional metadata formats. A Python version is available at [commonmeta-py](https://github.com/front-matter/commonmeta-py). + +## Installation -Ruby gem and command-line utility for the conversion of scholarly metadata, including [schema.org](https://schema.org). Based on the [bolognese](https://github.com/datacite/bolognese) gem, but using [commonmeta](https://commonmeta.org) as the intermediate format, and supporting additional metadata formats. A Python version is available at [commonmeta-py](https://github.com/front-matter/commonmeta-py). +Requires Ruby 3.0 or later (Ruby 2.x [has reached its end of life](https://endoflife.date/ruby) March 2023). Then add the following to your `Gemfile` to install the +latest version: + +``` +gem 'commonmeta-ruby' +``` + +Then run `bundle install` to install into your environment. + +You can also install the gem system-wide in the usual way: + +``` +gem install commonmeta-ruby +``` + +## Commands + +Run the `commonmeta` command with either an identifier (DOI or URL) or filename: + +``` +commonmeta https://doi.org/10.7554/elife.01567 +``` + +``` +commonmeta example.xml +``` + +commonmeta can read BibTeX files (file extension `.bib`), RIS files (file extension `.ris`), Crossref files (file extension `.xml`), DataCite files and CSL-JSON files. + +The input format (e.g. Crossref or BibteX) is automatically detected, but +you can also provide the format with the `--from` or `-f` flag. The supported +input formats are listed in the table above. + +The output format is determined by the `--to` or `-t` flag, and defaults to `schema_org`. + +Show all commands with `commonmeta help`: + +``` +Commands: + commonmeta # convert metadata + commonmeta --version, -v # print the version + commonmeta help [COMMAND] # Describe available commands or one specific command +``` + +## Errors + +Errors are returned to STDOUT. + +All input is validated against the commonmeta JSON schema. ## Supported Metadata Formats @@ -29,20 +81,3 @@ commonmeta-ruby reads and/or writes these metadata formats: | [CSV](https://en.wikipedia.org/wiki/Comma-separated_values) | csv | text/csv | no | yes | | [BibTex](http://en.wikipedia.org/wiki/BibTeX) | bibtex | application/x-bibtex | yes | yes | | [RIS](http://en.wikipedia.org/wiki/RIS_(file_format)) | ris | application/x-research-info-systems | yes | yes | - -## Installation - -Requires Ruby 3.0 or later (Ruby 2.x [has reached its end of life](https://endoflife.date/ruby) March 2023). Then add the following to your `Gemfile` to install the -latest version: - -```ruby -gem 'commonmeta-ruby' -``` - -Then run `bundle install` to install into your environment. - -You can also install the gem system-wide in the usual way: - -```bash -gem install commonmeta-ruby -``` \ No newline at end of file diff --git a/docs/readers/bibtex_reader.ipynb b/docs/readers/bibtex_reader.ipynb new file mode 100644 index 00000000..1a625c48 --- /dev/null +++ b/docs/readers/bibtex_reader.ipynb @@ -0,0 +1,37 @@ +{ + "cells": [ + { + "cell_type": "raw", + "metadata": {}, + "source": [ + "---\n", + "title: BibTex Reader\n", + "description: |\n", + " This notebook shows how to read metadata in BibTex format.\n", + "---" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Fetch the metadata" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Ruby 3.2.2", + "language": "ruby", + "name": "ruby" + }, + "language_info": { + "file_extension": ".rb", + "mimetype": "application/x-ruby", + "name": "ruby", + "version": "3.2.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/utils/doi_utils.ipynb b/docs/utils/doi_utils.ipynb new file mode 100644 index 00000000..eec9fcc5 --- /dev/null +++ b/docs/utils/doi_utils.ipynb @@ -0,0 +1,28 @@ +{ + "cells": [ + { + "cell_type": "raw", + "metadata": {}, + "source": [ + "---\n", + "title: doi_utils\n", + "---" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Ruby 3.2.2", + "language": "ruby", + "name": "ruby" + }, + "language_info": { + "file_extension": ".rb", + "mimetype": "application/x-ruby", + "name": "ruby", + "version": "3.2.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/writers/bibtex_writer.ipynb b/docs/writers/bibtex_writer.ipynb new file mode 100644 index 00000000..867a15cf --- /dev/null +++ b/docs/writers/bibtex_writer.ipynb @@ -0,0 +1,39 @@ +{ + "cells": [ + { + "cell_type": "raw", + "metadata": {}, + "source": [ + "---\n", + "title: BibTex Writer\n", + "description: |\n", + " This notebook shows how to generate BibTex metadata from a scholarly resource in commonmeta format generated by commonmeta-ruby.\n", + "---" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Fetch the metadata\n", + "\n", + "As with all commonmeta-ruby notebooks, we start by fetching metadata, in this example a journal article via its Crossref DOI, and then convert it to the commonmeta format." + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Ruby 3.2.2", + "language": "ruby", + "name": "ruby" + }, + "language_info": { + "file_extension": ".rb", + "mimetype": "application/x-ruby", + "name": "ruby", + "version": "3.2.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +}