OpenAlex_ORCID_to_DOI,OpenAcess_V1.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "ac7bedaf-05fb-4eb0-9bf5-e4d1d68a08c3",
   "metadata": {
    "id": "ac7bedaf-05fb-4eb0-9bf5-e4d1d68a08c3"
   },
   "source": [
    "## Query OpenAlex for works and their Open Access Status authored by a person\n",
    "This notebook queries the [OpenAlex API](https://docs.openalex.org/api) via its `/works` endpoint for works authored by a person. It takes an ORCID URL from a list of ORCID IDs as input which is used to filter for works where '`authorships.author.orcid`' matches the given ORCID URL.\n",
    "The notebook iterates through the given list and displys all DOIs and their Open Access Status."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "1be34380",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Prerequisites:\n",
    "import requests         # dependency to make HTTP calls"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "ec8cc719",
   "metadata": {},
   "outputs": [],
   "source": [
    "# The input is a list of ORCID IDs\n",
    "list_of_ids=[\"0000-0001-5406-9458\", \"0000-0001-6604-6253\",\"0000-0001-8343-8654\"]"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "nWOX9dkvaZ97",
   "metadata": {
    "id": "nWOX9dkvaZ97"
   },
   "source": [
    "We use it to query the OpenAlex API for works that specified the ORCID URL within their metadata in the field '`authorships.author.orcid`'.\n",
    " Since the API uses [pagination](https://docs.openalex.org/api/get-lists-of-entities#pagination), we need to loop through all pages to get the complete result set."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "8b608640-96a8-47d1-9de7-b7d3f6fd5a47",
   "metadata": {
    "executionInfo": {
     "elapsed": 5,
     "status": "ok",
     "timestamp": 1643058187685,
     "user": {
      "displayName": "",
      "photoUrl": "",
      "userId": ""
     },
     "user_tz": -60
    },
    "id": "8b608640-96a8-47d1-9de7-b7d3f6fd5a47"
   },
   "outputs": [],
   "source": [
    "# OpenAlex endpoint to query for works\n",
    "OPENALEX_API_WORKS = \"https://api.openalex.org/works\"\n",
    "\n",
    "# query all works that are connected to orcid\n",
    "def query_openalex_for_person2works(orcid):\n",
    "    page = 1\n",
    "    max_page = 1\n",
    "    \n",
    "    while page <= max_page:\n",
    "        params = {'filter': 'authorships.author.orcid:'+orcid, 'page': page}\n",
    "        response = requests.get(url=OPENALEX_API_WORKS,\n",
    "                                params=params,\n",
    "                                headers= {'Accept': 'application/json'})\n",
    "        response.raise_for_status()\n",
    "        result=response.json()\n",
    "\n",
    "        # calculate max page number in first loop\n",
    "        if max_page == 1:\n",
    "            max_page = determine_max_page(result)\n",
    "        page = page + 1\n",
    "        yield result\n",
    "\n",
    "# calculate max number of result pages\n",
    "def determine_max_page(response_data):\n",
    "    item_count = response_data['meta']['count']\n",
    "    items_per_page = response_data['meta']['per_page']\n",
    "    max_page_ceil = item_count // items_per_page + bool(item_count % items_per_page)\n",
    "    return max_page_ceil"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "kHRO_LiJr-u_",
   "metadata": {
    "id": "kHRO_LiJr-u_"
   },
   "source": [
    "From the resulting list of works we extract and print out title, DOI and the open access status. \n",
    "\n",
    "*Note: works that do not have a DOI assigned, will not be printed.*"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "1c36737c-4dcf-42d5-80e2-802f0a7a8326",
   "metadata": {
    "colab": {
     "base_uri": "https://localhost:8080/"
    },
    "executionInfo": {
     "elapsed": 516,
     "status": "ok",
     "timestamp": 1643058188197,
     "user": {
      "displayName": "",
      "photoUrl": "",
      "userId": ""
     },
     "user_tz": -60
    },
    "id": "1c36737c-4dcf-42d5-80e2-802f0a7a8326",
    "outputId": "fb849105-45c1-4abd-a6be-b6d4e3c567f4",
    "scrolled": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "10.1111/jdv.13854, A systematic review of worldwide epidemiology of psoriasis, Open Access Status: closed\n",
      "10.1186/1475-2891-12-103, Milk is not just food but most likely a genetic transfection system activating mTORC1 signaling for postnatal growth, Open Access Status: gold\n",
      "10.1016/j.jaci.2004.05.054, Decreasing incidence of occupational contact urticaria caused by natural rubber latex allergy in German health care workers, Open Access Status: closed\n",
      "10.1186/1479-5876-12-43, Milk: an exosomal microRNA transmitter promoting thymic regulatory T cell maturation preventing the development of atopy?, Open Access Status: gold\n",
      "10.1111/bjd.12083, Impact of atopic dermatitis and loss-of-function mutations in the filaggrin gene on the development of occupational irritant contact dermatitis, Open Access Status: green\n",
      "10.1111/jdv.14423, European Surveillance System on Contact Allergies (ESSCA): results with the European baseline series, 2013/14, Open Access Status: green\n",
      "10.1186/1743-7075-8-41, Over-stimulation of insulin/IGF-1 signaling by western diet may promote diseases of civilization: lessons learnt from laron syndrome, Open Access Status: gold\n",
      "10.1111/j.1600-0536.2012.02062.x, Anxiety, depression and impaired health-related quality of life in patients with occupational hand eczema, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2011.01991.x, First results from the multicentre study Rehabilitation of Occupational Skin Diseases - Optimization and Quality Assurance of Inpatient Management (ROQ), Open Access Status: closed\n",
      "10.1007/s00420-008-0300-x, Tertiary individual prevention of occupational skin diseases: a decade’s experience with recalcitrant occupational dermatitis, Open Access Status: closed\n",
      "10.1007/s40629-014-0013-5, Guideline contact dermatitis, Open Access Status: green\n",
      "10.1111/j.1365-2133.2008.08951.x, Nurses’ perceptions of the benefits and adverse effects of hand disinfection: alcohol-based hand rubs vs. hygienic handwashing: a multicentre questionnaire study with additional patch testing by the German Contact Dermatitis Research Group, Open Access Status: closed\n",
      "10.1111/jdv.13608, CONSENSUS REPORT: Recognizing non-melanoma skin cancer, including actinic keratosis, as an occupational disease - A Call to Action, Open Access Status: bronze\n",
      "10.1186/s12986-016-0101-2, Milk miRNAs: simple nutrients or systemic functional regulators?, Open Access Status: gold\n",
      "10.1111/jdv.14319, Minimum standards on prevention, diagnosis and treatment of occupational and work-related skin diseases in Europe - position paper of the COST Action StanDerm (TD 1206), Open Access Status: bronze\n",
      "10.1111/j.0105-1873.2006.00871.x, Osnabrueck hand eczema severity index - a study of the interobserver reliability of a scoring system assessing skin diseases of the hands, Open Access Status: closed\n",
      "10.1111/bjd.12035, Clinical course of occupational irritant contact dermatitis of the hands in relation to filaggrin genotype status and atopy, Open Access Status: bronze\n",
      "10.1034/j.1600-0536.2000.043003161.x, Relevance of multiparametric skin bioengineering in a prospectively-followed cohort of junior hairdressers, Open Access Status: closed\n",
      "10.2340/00015555-1677, Acne: Risk Indicator for Increased Body Mass Index and Insulin Resistance, Open Access Status: gold\n",
      "10.1111/cod.12196, Contact allergy to ingredients of hair cosmetics - a comparison of female hairdressers and clients based on IVDK 2007-2012 data, Open Access Status: closed\n",
      "10.1111/j.1365-2133.2008.08870.x, Validity and responsiveness of the Osnabrück Hand Eczema Severity Index (OHSI): a methodological study, Open Access Status: closed\n",
      "10.1007/s00420-009-0480-z, Sustainability of an interdisciplinary secondary prevention program for hairdressers, Open Access Status: closed\n",
      "10.1186/s13601-016-0108-9, Milk: a postnatal imprinting system stabilizing FoxP3 expression and regulatory T cell differentiation, Open Access Status: gold\n",
      "10.1111/j.1600-0536.2008.01496.x, Hand eczema in geriatric nurses in Germany - prevalence and risk factors, Open Access Status: closed\n",
      "10.1111/ddg.13956, S3 guidelines: Epicutaneous patch testing with contact allergens and drugs – Short version, Part 1, Open Access Status: closed\n",
      "10.1111/bjd.13169, Association between tobacco smoking and prognosis of occupational hand eczema: a prospective cohort study, Open Access Status: closed\n",
      "10.1111/jdv.14316, Occupational skin diseases: actual state analysis of patient management pathways in 28 European countries, Open Access Status: closed\n",
      "10.1111/bjd.15906, Is ultraviolet exposure acquired at work the most important risk factor for cutaneous squamous cell carcinoma? Results of the population-based case-control study FB-181, Open Access Status: closed\n",
      "10.1111/jdv.16557, European Task Force on Contact Dermatitis statement on coronavirus disease‐19 (COVID‐19) outbreak and the risk of adverse cutaneous reactions, Open Access Status: green\n",
      "10.1007/s11882-009-0024-3, Acetaminophen use: A risk for asthma?, Open Access Status: closed\n",
      "10.1186/1743-7075-9-74, The impact of cow's milk-mediated mTORC1-signaling in the initiation and progression of prostate cancer, Open Access Status: gold\n",
      "10.1007/s00403-009-0980-4, Short- and long-term effects of single and repetitive glove occlusion on the epidermal barrier, Open Access Status: closed\n",
      "10.1007/s00105-008-1557-4, Optimierte Versorgung von Patienten mit berufsbedingten Handekzemen, Open Access Status: closed\n",
      "10.1111/bjd.16561, T helper 17 cell/regulatory T-cell imbalance in hidradenitis suppurativa/acne inversa: the link to hair follicle dissection, obesity, smoking and autoimmune comorbidities, Open Access Status: closed\n",
      "10.1111/jdv.13609, The European Status Quo in legal recognition and patient-care services of occupational skin cancer, Open Access Status: bronze\n",
      "10.1186/s12967-014-0377-9, Milk consumption during pregnancy increases birth weight, a risk factor for the development of diseases of civilization, Open Access Status: gold\n",
      "10.1111/ddg.14048, S3 guideline for actinic keratosis and cutaneous squamous cell carcinoma – short version, part 1: diagnosis, interventions for actinic keratoses, care structures and quality‐of‐care indicators, Open Access Status: hybrid\n",
      "10.1007/978-3-642-03827-3_16, Clinical Aspects of Irritant Contact Dermatitis, Open Access Status: closed\n",
      "10.1111/cod.13192, European Surveillance System on Contact Allergies (ESSCA): Contact allergies in relation to body sites in patients with allergic contact dermatitis, Open Access Status: hybrid\n",
      "10.1111/j.1610-0387.2007.06344.x, Recommendation: Dermatologist's procedure., Open Access Status: closed\n",
      "10.1111/j.1610-0387.2008.06864.x, Multicenter study „Medical-Occupational Rehabilitation Procedure Skin - optimizing and quality assurance of inpatient-management (ROQ)”, Open Access Status: bronze\n",
      "10.5414/dbp56132, Begutachtungsempfehlungen für die Begutachtung von Haut- und Hautkrebserkrankungen – Teil I: Hauterkrankungen, Open Access Status: closed\n",
      "10.1093/occmed/kqu076, Severe occupational hand eczema, job stress and cumulative sickness absence, Open Access Status: bronze\n",
      "10.1111/ddg.13971, S3 Guidelines: Epicutaneous patch testing with contact allergens and drugs – Short version, Part 2, Open Access Status: closed\n",
      "10.5414/dbp57003, Bamberger Merkblatt: Begutachtungsempfehlungen für die Begutachtung von Haut- und Hautkrebserkrankungen - Teil II: Hautkrebserkrankungen, Open Access Status: closed\n",
      "10.1007/s00105-008-1557-4, [Optimal care of patients with occupational hand dermatitis: considerations of German occupational health insurance]., Open Access Status: closed\n",
      "10.1007/s00403-004-0523-y, Meteorological influence on NaOH irritation varies with body site, Open Access Status: closed\n",
      "10.1111/ddg.14072, S3 guideline for actinic keratosis and cutaneous squamous cell carcinoma (cSCC) – short version, part 2: epidemiology, surgical and systemic treatment of cSCC, follow‐up, prevention and occupational disease, Open Access Status: hybrid\n",
      "10.1111/j.1468-3083.2012.04474.x, IL1A-889 C/T gene polymorphism in irritant contact dermatitis, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2010.01855.x, Late reactions to patch test preparations with reduced concentrations of p-phenylenediamine: a multicentre investigation of the German Contact Dermatitis Research Group, Open Access Status: closed\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "10.1111/jdv.13602, Non-melanoma skin cancer by solar UV: the neglected occupational threat, Open Access Status: bronze\n",
      "10.3390/biom11060851, Exosome-Derived MicroRNAs of Human Milk and Their Effects on Infant Health and Development, Open Access Status: gold\n",
      "10.1007/s00105-008-1707-8, Neue Formen der Zusammenarbeit zwischen Praxis und Klinik, Open Access Status: closed\n",
      "10.1111/jdv.16303, Personal solar ultraviolet radiation dosimetry in an occupational setting across Europe, Open Access Status: green\n",
      "10.1111/bjd.19152, Global evidence on occupational sun exposure and keratinocyte cancers: a systematic review, Open Access Status: hybrid\n",
      "10.1111/cod.12140, Development of a standardized testing procedure for assessing the irritation potential of occupational skin cleansers, Open Access Status: closed\n",
      "10.1111/jdv.15768, Skin cancer in outdoor workers exposed to solar radiation: a largely underreported occupational disease in Italy, Open Access Status: hybrid\n",
      "10.1007/978-3-642-03827-3_53, International Comparison of Legal Aspects of Workers’ Compensation for Occupational Contact Dermatitis, Open Access Status: closed\n",
      "10.1111/ddg.12537, Skin cancer induced by natural UV-radiation as an occupational disease - Requirements for its notification and recognition, Open Access Status: closed\n",
      "10.1111/ddg.13605, Position paper: Telemedicine in occupational dermatology – current status and perspectives, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2009.01622.x, Semipermeable glove membranes-effects on skin barrier repair following SLS irritation, Open Access Status: closed\n",
      "10.1136/oemed-2016-103632, Colonisation with methicillin-resistant<i>Staphylococcus aureus</i>and associated factors among nurses with occupational skin diseases, Open Access Status: closed\n",
      "10.1111/j.1468-3083.2011.04145.x, Airborne contact dermatitis to tetrazepam in geriatric nurses - a report of 10 cases, Open Access Status: closed\n",
      "10.1111/jdv.12975, Tertiary individual prevention improves mental health in patients with severe occupational hand eczema, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2011.02046.x, Patch test characteristics of patients referred for suspected contact allergy of the feet-retrospective 10-year cross-sectional study of the IVDK data, Open Access Status: closed\n",
      "10.1136/bjophthalmol-2013-304197, Topical ophthalmic agents as allergens in periorbital dermatitis, Open Access Status: closed\n",
      "10.1111/ddg.12262, Psoriasis predisposition and occupational triggering factors in the appraisal of occupational medical expertises, Open Access Status: closed\n",
      "10.3390/cancers12082111, MicroRNA-21-Enriched Exosomes as Epigenetic Regulators in Melanomagenesis and Melanoma Progression: The Impact of Western Lifestyle Factors, Open Access Status: gold\n",
      "10.1034/j.1600-0536.2001.450401.x, Patch test sensitization caused by para-tertiary-butylcatechol:, Open Access Status: closed\n",
      "10.1007/s00105-008-1703-z, Optimiertes Hautarztverfahren und Stufenverfahren Haut, Open Access Status: closed\n",
      "10.1186/1743-7075-10-60, Metabolic effects of milk protein intake strongly depend on pre-existing metabolic and exercise status, Open Access Status: gold\n",
      "10.1111/jdv.13851, The three moments of skin cream application: an evidence-based proposal for use of skin creams in the prevention of irritant contact dermatitis in the workplace, Open Access Status: hybrid\n",
      "10.1111/jdv.15728, Microbiological contamination of cosmetic products – observations from Europe, 2005–2018, Open Access Status: closed\n",
      "10.1016/j.envres.2019.108967, Exposure to solar UV radiation in outdoor construction workers using personal dosimetry, Open Access Status: closed\n",
      "10.1016/j.jaci.2016.04.039, Milk: An epigenetic inducer of FoxP3 expression, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2007.01159.x, Site variations in susceptibility to SLS, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2009.07194.x, Zertifizierung: âBerufsdermatologie (ABD)â: Neues Seminar-Curriculum 2010 der Arbeitsgemeinschaft fÃ¼r Berufs- und Umweltdermatologie in der Deutschen Dermatologischen Gesellschaft, Open Access Status: closed\n",
      "10.1007/s00105-003-0644-9, Das neue Hautarztverfahren, Open Access Status: closed\n",
      "10.5414/dbp51002, Begutachtungsempfehlungen für die Berufskrankheit Nr. 5101 der Anlage zur BKV, Open Access Status: closed\n",
      "10.1111/jdv.15682, Translating the <scp>WHA</scp> resolution in a member state: towards a German programme on ‘Destigmatization’ for individuals with visible chronic skin diseases, Open Access Status: closed\n",
      "10.1111/ddg.12617, S1 guideline on occupational skin products: protective creams, skin cleansers, skin care products (ICD 10: L23, L24) - short version, Open Access Status: closed\n",
      "10.1111/cod.12109, No remarkable differences in rates of sensitization to common type I and IV allergens betweenFLGloss-of-function mutation carriers and wild-type subjects, Open Access Status: closed\n",
      "10.1067/s0190-9622(03)00856-9, Ratio of irritant contact dermatitis to allergic contact dermatitis in occupational skin disease, Open Access Status: closed\n",
      "10.1111/srt.12112, Standardization of skin cleansing<i>in vivo</i>: part I. Development of an Automated Cleansing Device (ACiD), Open Access Status: closed\n",
      "10.1111/jdv.14315, The Eastern European experience on occupational skin diseases. Make underreporting an issue?, Open Access Status: bronze\n",
      "10.1002/1348-9585.12083, Outdoor workers’ perceptions of skin cancer risk and attitudes to sun‐protective measures: A qualitative study, Open Access Status: gold\n",
      "10.1111/jdv.16742, Quality of life measurement in occupational skin diseases. Position paper of the European Academy of Dermatology and Venereology Task Forces on Quality of Life and Patient Oriented Outcomes and Occupational Skin Disease, Open Access Status: green\n",
      "10.1007/3-540-31294-3_25, Functional Skin Testing: the SMART Procedures, Open Access Status: closed\n",
      "10.1007/s00420-003-0485-y, Early secondary prevention of occupational skin disease in Germany: the dermatologist?s procedure in perspective, Open Access Status: closed\n",
      "10.5414/dbp54090, Optimiertes Hautarztverfahren: Ergebnisse einer Pilotstudie im Norddeutschen Raum, Open Access Status: closed\n",
      "10.5414/dbp58054, Beurteilung der Auswirkungen einer Allergie gegenüber Naturgummilatex bei der Minderung der Erwerbsfähigkeit im Rahmen der BK 5101, Open Access Status: closed\n",
      "10.1016/j.jphotobiol.2020.111866, Personal ultraviolet radiation dosimetry and its relationship with environmental data: A longitudinal pilot study in Croatian construction workers, Open Access Status: closed\n",
      "10.1111/jdv.17011, Improved protection of outdoor workers from solar ultraviolet radiation: position statement, Open Access Status: hybrid\n",
      "10.1111/jdv.17058, Experimental evaluation of nickel and cobalt release from tools and self‐reported prevalence of nickel and cobalt allergy in the German hairdressing trade, Open Access Status: hybrid\n",
      "10.1111/j.1610-0387.2010.07506.x, 10 years quality assurance of the dermatologist's procedure. ABD review board part II: 2003-2009, Open Access Status: closed\n",
      "10.1111/j.1600-0536.2006.01012.x, Occupational allergic contact dermatitis from monoethanolamine in a dental nurse, Open Access Status: closed\n",
      "10.1111/ddg.12090, Secondary prevention of occupational dermatoses: first systematic evaluation of optimized dermatologist's procedure and hierarchical multi-step intervention, Open Access Status: closed\n",
      "10.1007/978-3-319-40221-5, Kanerva’s Occupational Dermatology, Open Access Status: green\n",
      "10.1186/s12995-020-00279-8, Basal cell carcinoma risk and solar UV exposure in occupationally relevant anatomic sites: do histological subtype, tumor localization and Fitzpatrick phototype play a role? A population-based case-control study, Open Access Status: gold\n",
      "10.1111/cod.12094, Standardized dirts for testing the efficacy of workplace cleaning products: validation of their workplace relevance, Open Access Status: closed\n",
      "10.1111/jdv.14276, Occupational skin diseases - Development and Implementation of European Standards on Prevention of Occupational Skin Diseases, Open Access Status: closed\n",
      "10.1111/bjd.17579, Isotretinoin's paradoxical effects in immortalized sebocytes, Open Access Status: closed\n",
      "10.1111/jdv.16130, Assessment of occupational exposure and spectrum of contact sensitization in metalworkers with occupational dermatitis: results of a cohort study within the OCCUDERM project, Open Access Status: hybrid\n",
      "10.1159/000099994, Skin Protection for Hairdressers, Open Access Status: closed\n",
      "10.1111/ddg.12348, Cooperation between the occupational health insurance and physicians practicing occupational dermatology: Optimization potential in quality assurance, Open Access Status: closed\n",
      "10.1034/j.1600-0536.2002.460413.x, Ammonium thiolactate and thiolactic acid: important hairdressers' allergens?, Open Access Status: closed\n",
      "10.1111/srt.12113, Standardization of skin cleansing<i>in vivo</i>: part II. Validation of a newly developed Automated Cleansing Device (ACiD), Open Access Status: closed\n",
      "10.1055/s-0034-1391089, „Ich kann mit Handschuhen nicht arbeiten!“ – oder doch? Herausforderungen und Lösungen bei der Auswahl eines adäquaten Handschuhschutzes, Open Access Status: closed\n",
      "10.1046/j.1439-0353.2004.04028.x, Forum, Open Access Status: closed\n",
      "10.1111/jdv.17096, Incidence of occupational contact dermatitis in healthcare workers: a systematic review, Open Access Status: hybrid\n",
      "10.1111/ddg.12617_suppl, S1-Leitlinie „Berufliche Hautmittel: Hautschutz, Hautpflege und Hautreinigung“ (ICD 10: L23, L24) - Kurzversion, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2009.07096.x, Occupational airborne contact allergy to tetrazepam in a geriatric nurse, Open Access Status: closed\n",
      "10.1055/s-0034-1391088, „Hätte ich das mal eher gewusst!“ – Prävention von Berufsdermatosen durch gesundheitspädagogische Schulung und Beratung, Open Access Status: closed\n",
      "10.5414/dbx00229, Durch UV-Strahlung induzierte bösartige Hauttumoren – Erarbeitung und Evaluation von versicherungsrechtlich relevanten Abgrenzungskriterien beruflicher gegenüber nicht beruflicher Verursachung. Wissenschaftlicher Abschlussbericht des DGUV-, Open Access Status: closed\n",
      "10.1111/ddg.13971_g, S3‐Leitlinie: Durchführung des Epikutantests mit Kontaktallergenen und Arzneimitteln – Kurzfassung Teil 2, Open Access Status: closed\n",
      "10.1111/cod.13690, Developing a cosmetic series: Results from the <scp>ESSCA</scp> network, 2009‐2018, Open Access Status: green\n",
      "10.1007/s00105-013-2592-3, [\"With all suitable means\". Off-label-use and public statutory employers' liability insurance]., Open Access Status: closed\n",
      "10.1111/cod.12121, Development of a standardized procedure for testing the efficacy of workplace cleansers, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2007.06562.x, Durch Prävention besser leben …, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2008.06864_supp.x, Multi-Center-Studie „Medizinisch-Berufliches Rehabilitationsverfahren Haut - Optimierung und Qualitätssicherung des Heilverfahrens (ROQ)”, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07468.x, Safety, effectiveness and comparability of professional skin cleansers, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07355.x, Allergic contact dermatitis caused by the blue pigment VINAMON® Blue BX FW - a Phthalocyanine Blue in a vinyl glove, Open Access Status: closed\n",
      "10.1007/978-3-642-57398-9_8, Der zertifizierte Gutachter:Curriculum der Gutachterseminare der ABD, Open Access Status: closed\n",
      "10.1093/occmed/kqw180, Occupational skin cancer: sweeping the path to prevention, Open Access Status: bronze\n",
      "10.1111/ddg.13956_g, S3‐Leitlinie: Durchführung des Epikutantests mit Kontaktallergenen und Arzneimitteln – Kurzfassung Teil 1, Open Access Status: closed\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "10.1111/jdv.16849, The evolving field of Dermato‐oncology and the role of dermatologists: Position Paper of the EADO, EADV and Task Forces, EDF, IDS, EBDV–UEMS and EORTC Cutaneous Lymphoma Task Force, Open Access Status: hybrid\n",
      "10.1007/3-540-31301-x_44, Prevention and Therapy from Contact Dermatitis (with Special Reference to Occupational Dermatology), Open Access Status: bronze\n",
      "10.1111/j.1600-0536.2012.02122.x, Occupational allergic contact dermatitis caused by (R)-3-(2-chloro-1-hydroxyethyl)-phenol, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2009.07152.x, EntzÃ¼ndliche Auftreibungen der Fingerendglieder mit Nageldystrophie, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07509.x, „Woche der berufsbedingten Hautkrankheiten” vom 20. bis 24. September - eine konzertierte Aktion aller deutschen Dermatologen, Open Access Status: closed\n",
      "10.1007/s10039-002-0702-z, Berufsbedingte Hauterkrankungen—Paradigma der Sekundärprävention, Open Access Status: closed\n",
      "10.5414/dbx00256, Auswirkung einer arbeitsbedingten Kontaktallergie gegen Sulfite bei der BK 5101, Open Access Status: closed\n",
      "10.1111/ddg.13605_g, Positionspapier: Telemedizin in der Berufsdermatologie – Aktueller Stand und Perspektiven, Open Access Status: closed\n",
      "10.1109/eeeic/icpseurope49358.2020.9160852, Occupational solar UV exposure in construction workers in Italy: results of a one-month monitoring with personal dosimeters, Open Access Status: green\n",
      "10.1007/978-3-319-72451-5_71-1, Rehabilitation and Prevention of Hand Eczema, Open Access Status: closed\n",
      "10.1186/s12911-020-01195-x, Predicting the amputation risk for patients with diabetic foot ulceration – a Bayesian decision support tool, Open Access Status: green\n",
      "10.1111/all.15167, Proposal of 0.5 mg of protein/100 g of processed food as threshold for voluntary declaration of food allergen traces in processed food—A first step in an initiative to better inform patients and avoid fatal allergic reactions: A GA²LEN position paper, Open Access Status: green\n",
      "10.3390/ijerph19074176, Occupational Exposure of Hairdressers to Airborne Hazardous Chemicals: A Scoping Review, Open Access Status: gold\n",
      "10.1055/s-0033-1353605, Zertifizierung: „Berufsdermatologie für Pflegekräfte und Fachangestellte (DDA)“, Open Access Status: bronze\n",
      "10.1007/s15007-014-0579-8, Leitlinie Kontaktekzem, Open Access Status: closed\n",
      "10.1007/978-3-662-47714-4_24, Worker’s Protection: Gloves and Creams, Open Access Status: closed\n",
      "10.5414/alx01311e, Ethylene oxide as an occupational contact allergen – an underestimated problem?, Open Access Status: green\n",
      "10.1111/jdv.15309, Decreasing sunbed use in the German population between 2001 and 2015: survey in 155 679 working persons, Open Access Status: closed\n",
      "10.3390/sports7060128, Effectiveness of Manual Therapy, Customised Foot Orthoses and Combined Therapy in the Management of Plantar Fasciitis—A RCT, Open Access Status: gold\n",
      "10.1111/ddg.14048_g, S3‐Leitlinie „Aktinische Keratose und Plattenepithelkarzinom der Haut“ – Kurzfassung, Teil 1: Diagnostik, Interventionen bei aktinischen Keratosen, Versorgungsstrukturen und Qualitätsindikatoren, Open Access Status: hybrid\n",
      "10.1007/s15007-020-2517-2, Berufsdermatosen: ein Überblick, Open Access Status: closed\n",
      "10.1111/cod.13746, Stratum corneum levels of inflammatory mediators and natural moisturizing factor in patch test reactions to thiurams and fragrances and their possible role in discrimination between irritant and allergic reactions to hapten mixtures, Open Access Status: closed\n",
      "10.1007/978-3-642-02035-3_74, Wet Work and Occlusion, Open Access Status: closed\n",
      "10.1007/978-3-642-39546-8_15, Hand Eczema in Hairdressers, Open Access Status: closed\n",
      "10.1007/s10039-013-1965-2, Unfallversicherungsrechtliche Begutachtung bei atopischer Dermatitis, Open Access Status: closed\n",
      "10.1007/s15007-012-0021-z, Der Allergie-Diagnostik mit dem Epikutantest droht das Aus, Open Access Status: closed\n",
      "10.1007/s00105-013-2589-y, Off-label-Use, Open Access Status: bronze\n",
      "10.1002/mnfr.201470054, Adipogenic and insulin resistance- promoting effects of milk consumption, Open Access Status: closed\n",
      "10.1007/s00105-014-3571-z, Qualitätssicherung im Hautarztverfahren, Open Access Status: closed\n",
      "10.1586/edm.11.25, Prevention of occupational contact dermatitis, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07355_supp.x, Allergisches Kontaktekzem bei Typ-IV-Sensibilisierung gegenüber Phthalocyanine Blue bei nachgewiesener Typ-IVSensibilisierung gegenüber dem blauen Vinyl-Farbstoff VYNAMON® Blue BX FW, Open Access Status: closed\n",
      "10.1111/ddg.12153, Neue Berufskrankheit solarer Hautkrebs und parallele Verbesserungen in der UV GOÄ 2013, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2006.06089.x-i1, Zertifizierung: „Berufsdermatologie (ABD)”: Neues Seminar-Curriculum 2006 der Arbeitsgemeinschaft für Berufs- und Umweltdermatologie, Open Access Status: closed\n",
      "10.1007/978-3-662-47714-4_9, Occupational Contact Dermatitis, Open Access Status: closed\n",
      "10.1007/s10039-007-1262-z, Latexerkrankungen, Open Access Status: bronze\n",
      "10.5414/dbx0197, Auswirkung einer berufsbedingten Kontaktallergie gegen Iodpropinylbutylcarbamat (IPBC) bei der BK 5101, Open Access Status: closed\n",
      "10.1007/978-3-319-32331-2_12, Improved Health and Safety at Work by Cooperation with (Social) Partners: A European and Global Perspective, Open Access Status: closed\n",
      "10.1111/jdv.14320, Instructions for use of the OSD notification forms, Open Access Status: bronze\n",
      "10.1136/oemed-2018-icohabstracts.1213, 1651c Solar uv exposure and skin cancer in workers, Open Access Status: bronze\n",
      "10.1007/s001050170079, Leserbrief, Open Access Status: closed\n",
      "10.1111/ddg.14072_g, S3‐Leitlinie „Aktinische Keratose und Plattenepithelkarzinom der Haut“ – Kurzfassung, Teil 2: Epidemiologie, chirurgische und systemische Therapie des Plattenepithelkarzinoms, Nachsorge, Prävention und Berufskrankheit, Open Access Status: hybrid\n",
      "10.1007/s11553-020-00799-5, Prävention berufsbedingter Erkrankungen durch Lehrkräfte, Open Access Status: hybrid\n",
      "10.26574/maedica.2020.15.2.155, Is Occupational Skin Cancer More Aggressive than Sporadic Skin Cancer?, Open Access Status: None\n",
      "10.3390/en13226035, A One-Month Monitoring of Exposure to Solar UV Radiation of a Group of Construction Workers in Tuscany, Open Access Status: gold\n",
      "10.5414/al0db380e, Assessment of the effects of a work-related allergy to seafood on the reduction of earning capacity in the context of BK No. 5101, Open Access Status: green\n",
      "10.1007/s15006-021-9652-x, Gesundheitsrisiken durch Milchkonsum, Open Access Status: closed\n",
      "10.1186/s13643-021-01687-5, Illness perceptions of adults with eczematous skin diseases: a systematic mixed studies review, Open Access Status: gold\n",
      "10.1111/cod.13912, Partially airborne allergic contact dermatitis to rubber additives in a car mechanic, Open Access Status: hybrid\n",
      "10.1186/s12995-021-00314-2, New methods for assessing secondary performance attributes of sunscreens suitable for professional outdoor work, Open Access Status: gold\n",
      "10.1111/jdv.17483, Patch test informed consent form: position statement by European Academy of Dermatology and Venereology Task Force on Contact Dermatitis, Open Access Status: green\n",
      "10.1111/phpp.12717, Stratum corneum biomarkers after in vivo repeated exposure to sub‐erythemal dosages of ultraviolet radiation in unprotected and sunscreen (SPF 50+) protected skin, Open Access Status: closed\n",
      "10.3389/fpubh.2021.756566, Protocol for a Systematic Review on the Effectiveness of Interventions to Reduce Exposure to Occupational Solar UltraViolet Radiation (UVR) Among Outdoor Workers, Open Access Status: gold\n",
      "10.1007/978-3-642-39546-8_23, Acute Irritancy Testing for Predicting Increased Susceptibility to Irritant Contact Dermatitis in Atopic Individuals, Open Access Status: closed\n",
      "10.1007/978-3-642-21081-5_17, Hautkrankheiten, Open Access Status: closed\n",
      "10.1093/occmed/kqac046, Acceptance of skin products in healthcare workers: an empirical investigation, Open Access Status: closed\n",
      "10.1007/s00105-012-2345-8, Allergiediagnostik mit dem Epikutantest droht das Aus, Open Access Status: closed\n",
      "10.1007/978-3-319-40221-5_32-2, Psoriasis and Work, Open Access Status: closed\n",
      "10.1007/978-3-319-68617-2_74, Wet Work and Occlusion, Open Access Status: closed\n",
      "10.1007/978-3-642-02035-3_114, Online Databases and Sources of Information, Open Access Status: closed\n",
      "10.1007/978-3-642-57398-9_11, Rechtsverhältnis Gutachter/Unfallversicherungsträger —Gutachtenauftrag, Open Access Status: closed\n",
      "10.1007/978-3-642-21081-5_4, Funktionsprüfungen und Diagnostik als Grundlagen der Begutachtung, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07506_suppl.x, 10 Jahre Qualitätssicherung im Hautarztverfahren. Clearingstelle der ABD Teil II: 2003-2009, Open Access Status: closed\n",
      "10.1007/s00105-009-1799-9, Berufsdermatologie 2009, Open Access Status: bronze\n",
      "10.1007/978-3-319-40221-5_108-3, Prevention and Rehabilitation, Open Access Status: closed\n",
      "10.1007/978-3-642-02035-3_109, Prevention in Health-Care Professionals, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2009.07096_supp.x, Sensibilisierung gegenÃ¼ber Tetrazepam als Ursache eines beruflichen aerogenen allergischen Kontaktekzems bei einer Altenpflegerin, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2007.06570_supp.x, Die stumme Sensibilisierung in der Begutachtung - Wie könnte damit umgegangen werden?, Open Access Status: closed\n",
      "10.1111/j.1610-0387.2010.07468_supp.x, Sicherheit, Wirksamkeit und Vergleichbarkeit von beruflichen Hautreinigern, Open Access Status: closed\n",
      "10.1111/ddg.12550, Beruflicher Hautkrebs durch Sonne: Die neue Berufskrankheit 5103 kommt, Open Access Status: closed\n",
      "10.1007/s00105-015-3588-y, Vom Handekzem zum Hautkrebs, Open Access Status: bronze\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "10.1007/s00105-009-1857-3, Erratum zu: Neue Formen der Zusammenarbeit zwischen Praxis und Klinik, Open Access Status: bronze\n",
      "10.1111/ddg.12348_suppl, Optimierungspotentiale der Qualitätssicherung in der Zusammenarbeit zwischen Unfallversicherungsträgern und berufsdermatologisch tätigen Ärzten, Open Access Status: closed\n",
      "10.1111/j.0105-1873.2004.0309dq.x, FC04.5 Influence of ambient meteorological conditions (temperature and absolute humidity) on a routine NaOH-irritation test in occupational dermatology, Open Access Status: closed\n",
      "10.1007/978-3-642-57398-9_14, Begutachtung von Hautkrebserkrankungen im Zusammenhang mit UV-Licht-Expositionen, Open Access Status: closed\n",
      "10.1007/s12326-014-0147-8, Was Berufsdermatologie für unser Fach leisten kann, Open Access Status: closed\n",
      "10.1007/978-3-642-57398-9_13, Gutachtenauftrag zur BK Nr. 5101, Open Access Status: closed\n",
      "10.5414/dbp59171, Auswirkung einer berufsbedingten Sensibilisierung gegen Methylchloroisothiazolinon/Methylisothiazolinon (MCI/MI; (Chlor)Methylisothiazolon) bei der BK 5101, Open Access Status: closed\n",
      "10.1111/ddg.12262_suppl_2, Psoriasis als anlagebedingte Erkrankung in der berufsdermatologischen Beurteilung, Open Access Status: closed\n",
      "10.5414/dbp58190, Auswirkung einer berufsbedingten Sensibilisierung gegen p-tert-Butylphenol-Formaldehydharz (PTBP-F-R) bei der BK 5101, Open Access Status: closed\n",
      "10.1055/s-0034-1389812, Das „Osnabrücker Modell“ – von der Blaupause zum „Verfahren Haut“ der DGUV, Open Access Status: closed\n",
      "10.5414/dbp57036, Begründung für die Beurteilung der Auswirkung einer Allergie auf Bronopol, Open Access Status: closed\n",
      "10.1055/s-0034-1391268, Individuelle Risikofaktoren für beruflich bedingte Handekzeme, Open Access Status: closed\n",
      "10.1007/s00105-010-2093-6, Kontaktekzeme, Open Access Status: bronze\n",
      "10.1007/bf03370605, Beruf — Umwelt — Prävention, Open Access Status: closed\n",
      "10.1007/bf03362338, Anhebung der allergologischen Gebührenordnungsnummern in der UV-GOÄ, Open Access Status: closed\n",
      "10.1007/bf03361233, Poster, Open Access Status: closed\n",
      "10.1007/bf03373106, Kontaktallergie (V 58–V 65), Open Access Status: closed\n",
      "10.1111/jdv.14039, Response to letter to the editor re. Hines J, Wilkinson SM, John SM, et al . The three moments of skin cream application: an evidence-based proposal for use of skin creams in the prevention of irritant contact dermatitis in the workplace, Open Access Status: closed\n",
      "10.5414/dbx0287, Forschungsprojekt „Durch UVStrahlung induzierte bösartige Hauttumore“ – Berufliche und außerberufliche Exposition gegenüber UV-Strahlung und Hautkrebs, Open Access Status: closed\n",
      "10.1111/bjd.16304, 在工作中遭受的紫外线照射是否是皮肤鳞状细胞癌最重要的风险因素?基于人群的病例对照研究FB-181的结果, Open Access Status: bronze\n",
      "10.1007/978-3-319-68617-2_114, Websites, Online Databases, and Sources of Information, Open Access Status: closed\n",
      "10.1136/oemed-2018-icohabstracts.245, 1616 Title of (joint) special session ‘oed’ and ‘radiation at work’: how to tackle the increasing disease burden of occupational skin cancer, Open Access Status: bronze\n",
      "10.1136/oemed-2018-icohabstracts.257, 1618a Osd prevention: why? a european and global perspective, Open Access Status: bronze\n",
      "10.1136/oemed-2018-icohabstracts.655, 1658e Challenges in diagnosis and prevention of occupational skin diseases, Open Access Status: bronze\n",
      "10.1136/oemed-2018-icohabstracts.256, 1618 Taking stock of new developments in the prevention of occupational and environmental dermatoses, Open Access Status: bronze\n",
      "10.1055/a-0597-7053, Management und Abrechnung der BK 5103 − Tipps und Tricks, Open Access Status: closed\n",
      "10.1055/s-0038-1639300, Epidemiologische Fallstudie ambulant erworbener CDI: ein unterschätztes Problem, Open Access Status: closed\n",
      "10.5414/alx01757, Epikutantest-Ergebnisse mit der Europäischen Standardreihe bei Patienten mit berufsbedingtem Kontaktekzem in Europa. Ergebnisse des ESSCA Netzwerks 2002 – 2010, Open Access Status: green\n",
      "10.1111/bjd.16956, Imbalanced Th17/Treg axis in hidradenitis suppurativa, Open Access Status: None\n",
      "10.1111/jdv.15418, Commentary to ‘Minimal clinically important difference (MCID) for work productivity and activity impairment (WPAI) questionnaire in psoriasis patients’ by J.J. Wu et al ., Open Access Status: bronze\n",
      "10.1111/jdv.15610, The role of the dermatologist in the immune‐mediated/allergic diseases – position statement of the EADV task force on contact dermatitis, EADV task force on occupational skin diseases, UEMS‐EBDV subcommission allergology and European Dermatology Forum, Open Access Status: closed\n",
      "10.1111/ddg.12262_1, Psoriasis predisposition and occupational triggering factors in the appraisal of occupational medical expertises, Open Access Status: closed\n",
      "10.37307/j.2193-3308.2015.03.09, Betrieblicher Hautschutz – Auswahl geeigneter Schutzhandschuhe, Open Access Status: closed\n",
      "10.1007/s00105-020-04611-5, Berufsdermatologische Aspekte der Pustulosis palmoplantaris, Open Access Status: closed\n",
      "10.2196/31980, The Expressiveness of SNOMED CT for Wound Care: Mapping a Standardized Item Set for Leg Ulcers onto SNOMED CT (Preprint), Open Access Status: gold\n",
      "10.1007/s00105-021-04823-3, Berufsdermatologie – aktueller denn je, Open Access Status: bronze\n",
      "10.1007/164_2021_511, Secondary and Tertiary Prevention: Medical Rehabilitation, Open Access Status: closed\n",
      "10.1111/cod.13929, Acceptance of semipermeable glove liners compared to cotton glove liners in health care workers with work‐related skin diseases: Results of a quasi‐randomized trial under real workplace conditions, Open Access Status: hybrid\n",
      "10.1111/hex.13319, Effectiveness of a structured short intervention against stigmatisation in chronic visible skin diseases: Results of a controlled trial in future educators, Open Access Status: gold\n",
      "10.1007/s15006-021-0292-y, Berufsdermatosen frühzeitig erkennen, Open Access Status: closed\n",
      "10.1111/jam.15399, Novel insights into pivotal risk factors for rectal carriage of extended‐spectrum‐β‐lactamase‐producing enterobacterales within the general population in Lower Saxony, Germany, Open Access Status: hybrid\n",
      "10.1155/2021/5558694, UV-Induced Skin Cancer Knowledge, Sun Exposure, and Tanning Behavior among University Students: Investigation of an Opportunity Sample of German University Students, Open Access Status: gold\n",
      "10.2196/preprints.31980, The Expressiveness of SNOMED CT for Wound Care: Mapping a standardised Item Set for Leg Ulcers to SNOMED CT (Preprint), Open Access Status: closed\n",
      "10.1016/j.orthtr.2022.03.012, Influence of physical activity on well-being at times of the COVID-19 pandemic: a review, Open Access Status: bronze\n",
      "10.1007/s11553-022-00940-6, Prävention von berufsbedingtem Hautkrebs bei Beschäftigten im Freien: Entwicklung eines Curriculums zur Fortbildung von Multiplikator*innen, Open Access Status: hybrid\n",
      "10.1136/bmjopen-2022-062194, Prevalence and incidence of hand eczema in healthcare workers: protocol for a systematic review and meta-analysis, Open Access Status: gold\n",
      "10.1007/978-3-642-39546-8_41, Prognosis of Hand Eczema, Open Access Status: closed\n",
      "10.1007/978-3-642-57398-9_10, Die Funktion des ärztlichen Sachverständigen in der gesetzlichen Unfallversicherung, Open Access Status: closed\n",
      "10.1007/s00105-011-2215-9, „Endemisches“ aerogenes allergisches Kontaktekzem?, Open Access Status: closed\n",
      "10.1046/j.1365-2958.1998.01047.x, Genes encoding putative effector proteins of the type III secretion system of<i>Salmonella</i>pathogenicity island 2 are required for bacterial virulence and proliferation in macrophages, Open Access Status: bronze\n",
      "10.1038/s41586-018-0395-5, Neonatal selection by Toll-like receptor 5 influences long-term gut microbiota composition, Open Access Status: closed\n",
      "10.1007/978-94-007-0940-9_2, Adhesive Mechanisms of Salmonella enterica, Open Access Status: closed\n",
      "10.1046/j.1365-2958.1999.01190.x, Molecular and functional analysis indicates a mosaic structure of Salmonella pathogenicity island 2, Open Access Status: bronze\n",
      "10.1189/jlb.1210683, Toll-like receptor activation and hypoxia use distinct signaling pathways to stabilize hypoxia-inducible factor 1α (HIF1A) and result in differential HIF1A-dependent gene expression, Open Access Status: bronze\n",
      "10.1046/j.1462-5822.2003.00334.x, Intracellular activities of Salmonella enterica in murine dendritic cells, Open Access Status: gold\n",
      "10.1128/iai.00871-09, Effect of the O-Antigen Length of Lipopolysaccharide on the Functions of Type III Secretion Systems in <i>Salmonella enterica</i>, Open Access Status: green\n",
      "10.1016/j.chom.2017.02.005, Salmonella enterica Remodels the Host Cell Endosomal System for Efficient Intravacuolar Nutrition, Open Access Status: bronze\n",
      "10.1038/srep17740, Self-labelling enzymes as universal tags for fluorescence microscopy, super-resolution microscopy and electron microscopy, Open Access Status: gold\n",
      "10.1099/13500872-142-5-1049, Molecular genetic approaches for the study of virulence in both pathogenic bacteria and fungi, Open Access Status: bronze\n",
      "10.1371/journal.ppat.1004374, Reorganization of the Endosomal System in Salmonella-Infected Cells: The Ultrastructure of Salmonella-Induced Tubular Compartments, Open Access Status: gold\n",
      "10.1128/iai.73.10.7027-7031.2005, Cloning Vectors and Fluorescent Proteins Can Significantly Inhibit Salmonella enterica Virulence in Both Epithelial Cells and Macrophages: Implications for Bacterial Pathogenesis Studies, Open Access Status: green\n",
      "10.1128/mbio.00254-15, Efficiency of Conditionally Attenuated Salmonella enterica Serovar Typhimurium in Bacterium-Mediated Tumor Therapy, Open Access Status: gold\n",
      "10.1128/aem.00509-07, Rapid Engineering of Bacterial Reporter Gene Fusions by Using Red Recombination, Open Access Status: green\n",
      "10.1111/cmi.12441, Take the tube: remodelling of the endosomal system by intracellular<i>S</i><i>almonella enterica</i>, Open Access Status: gold\n",
      "10.1371/journal.ppat.1004385, Age-Dependent Enterocyte Invasion and Microcolony Formation by Salmonella, Open Access Status: gold\n",
      "10.2217/fmb.11.144, <i>Salmonella enterica</i> as a vaccine carrier, Open Access Status: closed\n",
      "10.1128/iai.67.3.1093-1099.1999, Pathogenicity Island 2 Mutants of Salmonella typhimurium Are Efficient Carriers for Heterologous Antigens and Enable Modulation of Immune Responses, Open Access Status: green\n",
      "10.1158/0008-5472.can-14-1169, Effective Cancer Vaccine Platform Based on Attenuated <i>Salmonella</i> and a Type III Secretion System, Open Access Status: green\n",
      "10.1371/journal.ppat.1006925, Minimal SPI1-T3SS effector requirement for Salmonella enterocyte invasion and intracellular proliferation in vivo, Open Access Status: gold\n",
      "10.1371/journal.pbio.2002267, A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum, Open Access Status: gold\n",
      "10.1016/j.str.2013.02.020, Structural Insight into the Giant Ca2+-Binding Adhesin SiiE: Implications for the Adhesion of Salmonella enterica to Polarized Epithelial Cells, Open Access Status: bronze\n",
      "10.3389/fmicb.2012.00164, Salmonella enterica: a surprisingly well-adapted intracellular lifestyle, Open Access Status: gold\n",
      "10.1128/iai.00023-14, Salmonella enterica Invasion of Polarized Epithelial Cells Is a Highly Cooperative Effort, Open Access Status: green\n",
      "10.1111/j.1462-5822.2011.01612.x, Biofilm formation by Salmonella enterica serovar Typhimurium colonizing solid tumours, Open Access Status: green\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "10.3389/fcimb.2015.00048, Purification and proteomics of pathogen-modified vacuoles and membranes, Open Access Status: gold\n",
      "10.3390/molecules20011134, The Giant Adhesin SiiE of Salmonella enterica, Open Access Status: gold\n",
      "10.1074/mcp.m114.041145, Proteomes of Host Cell Membranes Modified by Intracellular Activities of Salmonella enterica, Open Access Status: hybrid\n",
      "10.1186/1471-2180-10-257, Strain-specific differences in pili formation and the interaction of Corynebacterium diphtheriae with host cells, Open Access Status: gold\n",
      "10.1038/sj.cgt.7700501, Salmonella pathogenicity island-2 and anticancer activity in mice, Open Access Status: closed\n",
      "10.1128/iai.00624-15, Role of Host Cell-Derived Amino Acids in Nutrition of Intracellular Salmonella enterica, Open Access Status: green\n",
      "10.1038/srep31601, Single molecule super-resolution imaging of proteins in living Salmonella enterica using self-labelling enzymes, Open Access Status: gold\n",
      "10.1371/journal.ppat.1007915, Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization, Open Access Status: gold\n",
      "10.1111/j.1469-8137.2012.04124.x, SseF, a type III effector protein from the mammalian pathogen Salmonella enterica , requires resistance‐gene‐mediated signalling to activate cell death in the model plant Nicotiana benthamiana, Open Access Status: bronze\n",
      "10.1371/journal.ppat.1007741, Proteomics of intracellular Salmonella enterica reveals roles of Salmonella pathogenicity island 2 in metabolism and antioxidant defense, Open Access Status: gold\n",
      "10.1111/cmi.12476, Low-oxygen tensions found in<i>S</i><i>almonella</i>-infected gut tissue boost<i>S</i><i>almonella</i>replication in macrophages by impairing antimicrobial activity and augmenting<i>S</i><i>almonella</i>virulence, Open Access Status: gold\n",
      "10.1371/journal.pone.0115423, Live Cell Imaging Reveals Novel Functions of Salmonella enterica SPI2-T3SS Effector Proteins in Remodeling of the Host Cell Endosomal System, Open Access Status: gold\n",
      "10.1371/journal.pone.0033220, Divergent Roles of Salmonella Pathogenicity Island 2 and Metabolic Traits during Interaction of S. enterica Serovar Typhimurium with Host Cells, Open Access Status: gold\n",
      "10.4161/viru.22761, Interactions ofSalmonella entericawith dendritic cells, Open Access Status: gold\n",
      "10.1128/iai.06056-11, Evaluation of Salmonella enterica Type III Secretion System Effector Proteins as Carriers for Heterologous Vaccine Antigens, Open Access Status: green\n",
      "10.1111/cmi.12253, TheSalmonella entericagiant adhesin SiiE binds to polarized epithelial cells in a lectin-like manner, Open Access Status: closed\n",
      "10.1016/0005-2728(90)90007-q, Orientation of subunit c of the ATP synthase of Escherichia coli — a study with peptide-specific antibodies, Open Access Status: closed\n",
      "10.1038/s41598-017-10598-2, Functional expression of the entire adhesiome of Salmonella enterica serotype Typhimurium, Open Access Status: gold\n",
      "10.1039/c3nr01550e, Evaluation of nanoparticles as endocytic tracers in cellular microbiology, Open Access Status: hybrid\n",
      "10.1074/jbc.m113.513275, A Trimeric Lipoprotein Assists in Trimeric Autotransporter Biogenesis in Enterobacteria, Open Access Status: hybrid\n",
      "10.1111/cmi.12222, SiiA and SiiB are novel type I secretion system subunits controlling SPI4-mediated adhesion ofSalmonella enterica, Open Access Status: bronze\n",
      "10.3389/fmicb.2019.00762, Impact of ROS-Induced Damage of TCA Cycle Enzymes on Metabolism and Virulence of Salmonella enterica serovar Typhimurium, Open Access Status: gold\n",
      "10.3389/fcimb.2014.00191, Salmonellaâ€”how a metabolic generalist adopts an intracellular lifestyle during infection, Open Access Status: gold\n",
      "10.1016/j.ijmm.2017.11.001, Metabolic adaptation of intracellular bacteria and fungi to macrophages, Open Access Status: closed\n",
      "10.1186/1471-2105-14-218, Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling, Open Access Status: gold\n",
      "10.4161/hv.29241, Vaccines against human diarrheal pathogens, Open Access Status: bronze\n",
      "10.1371/journal.ppat.1006559, The plasmid-encoded Ipf and Klf fimbriae display different expression and varying roles in the virulence of Salmonella enterica serovar Infantis in mouse vs. avian hosts, Open Access Status: gold\n",
      "10.1111/cmi.13155, Presence of SopE and mode of infection result in increased <i>Salmonella</i> ‐containing vacuole damage and cytosolic release during host cell infection by <scp> <i>Salmonella enterica</i> </scp>, Open Access Status: gold\n",
      "10.1371/journal.pone.0035004, Functional Dissection of SseF, a Membrane-Integral Effector Protein of Intracellular Salmonella enterica, Open Access Status: gold\n",
      "10.1515/hsz-2012-0324, Imaging the invisible: resolving cellular microcompartments by superresolution microscopy techniques, Open Access Status: closed\n",
      "10.1002/cyto.a.21122, Comparison of parameter-adapted segmentation methods for fluorescence micrographs, Open Access Status: bronze\n",
      "10.1139/b95-358, Regulation of fungal extracellular proteases and their role in mammalian pathogenesis, Open Access Status: closed\n",
      "10.1371/journal.ppat.1007248, Salmonella Typhimurium effector SseI inhibits chemotaxis and increases host cell survival by deamidation of heterotrimeric Gi proteins, Open Access Status: gold\n",
      "10.1371/journal.ppat.1006418, Structural and functional dissection reveals distinct roles of Ca2+-binding sites in the giant adhesin SiiE of Salmonella enterica, Open Access Status: gold\n",
      "10.1186/1471-2180-10-104, Functional dissection of translocon proteins of the Salmonella Pathogenicity Island 2-encoded type III secretion system, Open Access Status: gold\n",
      "10.1016/j.vaccine.2014.02.070, An oral vaccine for type 1 diabetes based on live attenuated Salmonella, Open Access Status: closed\n",
      "10.1016/0378-1119(95)00673-t, The ATP synthase (F1Fo) of Streptomyces lividans: sequencing of the atp operon and phylogenetic considerations with subunit β, Open Access Status: closed\n",
      "10.1016/s0580-9517(08)70297-6, 7.3 Signature Tagged Mutagenesis, Open Access Status: closed\n",
      "10.1016/j.ijmm.2018.11.001, A versatile remote control system for functional expression of bacterial virulence genes based on the tetA promoter, Open Access Status: closed\n",
      "10.1128/mbio.00769-19, Self-Labeling Enzyme Tags for Analyses of Translocation of Type III Secretion System Effector Proteins, Open Access Status: gold\n",
      "10.1111/j.1432-1033.1991.tb16505.x, Purification and characterization of the F1 portion of the ATP synthase (F1Fo) of Streptomyces lividans, Open Access Status: bronze\n",
      "10.1128/jb.00582-10, Regulation of <i>nleA</i> in Shiga Toxin-Producing <i>Escherichia coli</i> O84:H4 Strain 4795/97, Open Access Status: green\n",
      "10.1111/cmi.13293, Fluorescent protein‐based reporters reveal stress response of intracellular <scp> <i>Salmonella enterica</i> </scp> at level of single bacterial cells, Open Access Status: gold\n",
      "10.1371/journal.ppat.1009451, Pathoadaptation of the passerine-associated Salmonella enterica serovar Typhimurium lineage to the avian host, Open Access Status: gold\n",
      "10.3390/ijms22126484, Manipulation of Host Cell Organelles by Intracellular Pathogens, Open Access Status: gold\n",
      "10.3389/fcimb.2021.624650, Comprehensive Single Cell Analyses of the Nutritional Environment of Intracellular Salmonella enterica, Open Access Status: gold\n",
      "10.1371/journal.pone.0123646, A Gateway-Based System for Fast Evaluation of Protein-Protein Interactions in Bacteria, Open Access Status: gold\n",
      "10.12688/f1000research.8468.1, Models of intestinal infection by Salmonella enterica: introduction of a new neonate mouse model, Open Access Status: gold\n",
      "10.1038/s41598-019-53085-6, Correlative light and scanning electron microscopy (CLSEM) for analysis of bacterial infection of polarized epithelial cells, Open Access Status: gold\n",
      "10.1128/aem.02757-19, Factors Required for Adhesion of Salmonella enterica Serovar Typhimurium to Corn Salad (Valerianella locusta), Open Access Status: green\n",
      "10.1074/mcp.ra119.001841, Proteomic Analysis of Salmonella-modified Membranes Reveals Adaptations to Macrophage Hosts, Open Access Status: hybrid\n",
      "10.1371/journal.ppat.1008220, A trafficome-wide RNAi screen reveals deployment of early and late secretory host proteins and the entire late endo-/lysosomal vesicle fusion machinery by intracellular Salmonella, Open Access Status: gold\n",
      "10.1016/0005-2728(96)00003-5, The ATP synthase of Streptomyces lividans: characterization and purification of the F1Fo complex, Open Access Status: bronze\n",
      "10.3389/fmicb.2016.01010, The Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode, Open Access Status: gold\n",
      "10.1016/j.tim.2020.03.005, Eat in or Take out? Metabolism of Intracellular Salmonella enterica, Open Access Status: closed\n",
      "10.1007/978-1-4939-1625-2_13, Live Cell Imaging of Intracellular Salmonella enterica, Open Access Status: closed\n",
      "10.1038/s42003-021-02049-6, The protected physiological state of intracellular Salmonella enterica persisters reduces host cell-imposed stress, Open Access Status: gold\n",
      "10.1371/journal.ppat.1009319, Single cell analyses reveal distinct adaptation of typhoidal and non-typhoidal Salmonella enterica serovars to intracellular lifestyle, Open Access Status: gold\n",
      "10.1007/978-1-4939-1625-2_4, Red-Mediated Recombineering of Salmonella enterica Genomes, Open Access Status: closed\n",
      "10.1111/mmi.14368, Structural and functional characterization of SiiA, an auxiliary protein from the SPI4‐encoded type 1 secretion system from Salmonella enterica, Open Access Status: hybrid\n",
      "10.3389/fmicb.2020.00378, Expression and Functional Characterization of Various Chaperon-Usher Fimbriae, Curli Fimbriae, and Type 4 Pili of Enterohemorrhagic Escherichia coli O157:H7 Sakai, Open Access Status: gold\n",
      "10.1101/2020.10.23.351551, Single cell analyses reveal phosphate availability as critical factor for nutrition of Salmonella enterica within mammalian host cells, Open Access Status: green\n",
      "10.3791/52058, Application of Fluorescent Nanoparticles to Study Remodeling of the Endo-lysosomal System by Intracellular Bacteria, Open Access Status: green\n",
      "10.1016/j.ijmm.2017.09.004, Structure-based functional analysis of effector protein SifA in living cells reveals motifs important for Salmonella intracellular proliferation, Open Access Status: closed\n",
      "10.1111/cmi.13176, Role of the ESCRT‐III complex in controlling integrity of the Salmonella ‐containing vacuole, Open Access Status: gold\n",
      "10.1016/j.pep.2020.105632, Recombinant protein production and purification of SiiD, SiiE and SiiF - Components of the SPI4-encoded type I secretion system from Salmonella Typhimurium, Open Access Status: green\n",
      "10.1101/2020.07.20.213272, Fluorescent protein-based reporters reveal stress response of intracellular Salmonella enterica on single cell level, Open Access Status: green\n",
      "10.1017/cbo9780511541520, Horizontal Gene Transfer in the Evolution of Pathogenesis, Open Access Status: closed\n",
      "10.3389/fimmu.2020.00731, Proteoglycan-Dependent Endo-Lysosomal Fusion Affects Intracellular Survival of Salmonella Typhimurium in Epithelial Cells, Open Access Status: gold\n",
      "10.1007/978-1-0716-0791-6_10, Correlative Light and Scanning Electron Microscopy to Study Interactions of Salmonella enterica with Polarized Epithelial Cell Monolayers, Open Access Status: closed\n",
      "10.1111/cmi.13374, Single‐cell analyses reveal phosphate availability as critical factor for nutrition of Salmonella enterica within mammalian host cells, Open Access Status: hybrid\n",
      "10.1007/978-3-540-89208-3_146, Image Segmentation of Cell Nuclei based on Classification in the Color Space, Open Access Status: closed\n",
      "10.21769/bioprotoc.1612, Sample Preparation for Correlative Light and Electron Microscopy (CLEM) Analyses in Cellular Microbiology, Open Access Status: closed\n",
      "10.1002/9783527682386.ch3, Metabolism of IntracellularSalmonella enterica, Open Access Status: closed\n"
     ]
    },
    {
     "ename": "KeyboardInterrupt",
     "evalue": "",
     "output_type": "error",
     "traceback": [
      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[1;31mKeyboardInterrupt\u001b[0m                         Traceback (most recent call last)",
      "\u001b[1;32m~\\AppData\\Local\\Temp\\ipykernel_240\\4284056563.py\u001b[0m in \u001b[0;36m<module>\u001b[1;34m\u001b[0m\n\u001b[0;32m     22\u001b[0m \u001b[1;31m# main programm:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     23\u001b[0m \u001b[1;32mfor\u001b[0m \u001b[0mitem\u001b[0m \u001b[1;32min\u001b[0m \u001b[0mlist_of_ids\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 24\u001b[1;33m     \u001b[0mmain_search\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
      "\u001b[1;32m~\\AppData\\Local\\Temp\\ipykernel_240\\4284056563.py\u001b[0m in \u001b[0;36mmain_search\u001b[1;34m(orcid)\u001b[0m\n\u001b[0;32m     13\u001b[0m \u001b[1;32mdef\u001b[0m \u001b[0mmain_search\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0morcid\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     14\u001b[0m     \u001b[0mlist_of_pages\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mquery_openalex_for_person2works\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0morcid\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 15\u001b[1;33m     \u001b[1;32mfor\u001b[0m \u001b[0mpage\u001b[0m \u001b[1;32min\u001b[0m \u001b[0mlist_of_pages\u001b[0m \u001b[1;32mor\u001b[0m \u001b[1;33m[\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     16\u001b[0m         \u001b[0mworks\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mextract_works_from_page\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mpage\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     17\u001b[0m         \u001b[1;32mfor\u001b[0m \u001b[0mwork\u001b[0m \u001b[1;32min\u001b[0m \u001b[0mworks\u001b[0m \u001b[1;32mor\u001b[0m \u001b[1;33m[\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\AppData\\Local\\Temp\\ipykernel_240\\3598176105.py\u001b[0m in \u001b[0;36mquery_openalex_for_person2works\u001b[1;34m(orcid)\u001b[0m\n\u001b[0;32m      9\u001b[0m     \u001b[1;32mwhile\u001b[0m \u001b[0mpage\u001b[0m \u001b[1;33m<=\u001b[0m \u001b[0mmax_page\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     10\u001b[0m         \u001b[0mparams\u001b[0m \u001b[1;33m=\u001b[0m \u001b[1;33m{\u001b[0m\u001b[1;34m'filter'\u001b[0m\u001b[1;33m:\u001b[0m \u001b[1;34m'authorships.author.orcid:'\u001b[0m\u001b[1;33m+\u001b[0m\u001b[0morcid\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'page'\u001b[0m\u001b[1;33m:\u001b[0m \u001b[0mpage\u001b[0m\u001b[1;33m}\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 11\u001b[1;33m         response = requests.get(url=OPENALEX_API_WORKS,\n\u001b[0m\u001b[0;32m     12\u001b[0m                                 \u001b[0mparams\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mparams\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     13\u001b[0m                                 headers= {'Accept': 'application/json'})\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\requests\\api.py\u001b[0m in \u001b[0;36mget\u001b[1;34m(url, params, **kwargs)\u001b[0m\n\u001b[0;32m     71\u001b[0m     \"\"\"\n\u001b[0;32m     72\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 73\u001b[1;33m     \u001b[1;32mreturn\u001b[0m \u001b[0mrequest\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m\"get\"\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0murl\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mparams\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mparams\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     74\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     75\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\requests\\api.py\u001b[0m in \u001b[0;36mrequest\u001b[1;34m(method, url, **kwargs)\u001b[0m\n\u001b[0;32m     57\u001b[0m     \u001b[1;31m# cases, and look like a memory leak in others.\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     58\u001b[0m     \u001b[1;32mwith\u001b[0m \u001b[0msessions\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mSession\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;32mas\u001b[0m \u001b[0msession\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 59\u001b[1;33m         \u001b[1;32mreturn\u001b[0m \u001b[0msession\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mrequest\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mmethod\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mmethod\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0murl\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0murl\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     60\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     61\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\requests\\sessions.py\u001b[0m in \u001b[0;36mrequest\u001b[1;34m(self, method, url, params, data, headers, cookies, files, auth, timeout, allow_redirects, proxies, hooks, stream, verify, cert, json)\u001b[0m\n\u001b[0;32m    585\u001b[0m         }\n\u001b[0;32m    586\u001b[0m         \u001b[0msend_kwargs\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mupdate\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0msettings\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 587\u001b[1;33m         \u001b[0mresp\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0msend\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mprep\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0msend_kwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    588\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    589\u001b[0m         \u001b[1;32mreturn\u001b[0m \u001b[0mresp\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\requests\\sessions.py\u001b[0m in \u001b[0;36msend\u001b[1;34m(self, request, **kwargs)\u001b[0m\n\u001b[0;32m    699\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    700\u001b[0m         \u001b[1;31m# Send the request\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 701\u001b[1;33m         \u001b[0mr\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0madapter\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0msend\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mrequest\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    702\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    703\u001b[0m         \u001b[1;31m# Total elapsed time of the request (approximately)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\requests\\adapters.py\u001b[0m in \u001b[0;36msend\u001b[1;34m(self, request, stream, timeout, verify, cert, proxies)\u001b[0m\n\u001b[0;32m    487\u001b[0m         \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    488\u001b[0m             \u001b[1;32mif\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[0mchunked\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 489\u001b[1;33m                 resp = conn.urlopen(\n\u001b[0m\u001b[0;32m    490\u001b[0m                     \u001b[0mmethod\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mrequest\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mmethod\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    491\u001b[0m                     \u001b[0murl\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0murl\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\urllib3\\connectionpool.py\u001b[0m in \u001b[0;36murlopen\u001b[1;34m(self, method, url, body, headers, retries, redirect, assert_same_host, timeout, pool_timeout, release_conn, chunked, body_pos, **response_kw)\u001b[0m\n\u001b[0;32m    701\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    702\u001b[0m             \u001b[1;31m# Make the request on the httplib connection object.\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 703\u001b[1;33m             httplib_response = self._make_request(\n\u001b[0m\u001b[0;32m    704\u001b[0m                 \u001b[0mconn\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    705\u001b[0m                 \u001b[0mmethod\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\urllib3\\connectionpool.py\u001b[0m in \u001b[0;36m_make_request\u001b[1;34m(self, conn, method, url, timeout, chunked, **httplib_request_kw)\u001b[0m\n\u001b[0;32m    447\u001b[0m                     \u001b[1;31m# Python 3 (including for exceptions like SystemExit).\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    448\u001b[0m                     \u001b[1;31m# Otherwise it looks like a bug in the code.\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 449\u001b[1;33m                     \u001b[0msix\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mraise_from\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0me\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;32mNone\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    450\u001b[0m         \u001b[1;32mexcept\u001b[0m \u001b[1;33m(\u001b[0m\u001b[0mSocketTimeout\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mBaseSSLError\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mSocketError\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;32mas\u001b[0m \u001b[0me\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    451\u001b[0m             \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_raise_timeout\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0merr\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0me\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0murl\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0murl\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mtimeout_value\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mread_timeout\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\urllib3\\packages\\six.py\u001b[0m in \u001b[0;36mraise_from\u001b[1;34m(value, from_value)\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\site-packages\\urllib3\\connectionpool.py\u001b[0m in \u001b[0;36m_make_request\u001b[1;34m(self, conn, method, url, timeout, chunked, **httplib_request_kw)\u001b[0m\n\u001b[0;32m    442\u001b[0m                 \u001b[1;31m# Python 3\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    443\u001b[0m                 \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 444\u001b[1;33m                     \u001b[0mhttplib_response\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mconn\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mgetresponse\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    445\u001b[0m                 \u001b[1;32mexcept\u001b[0m \u001b[0mBaseException\u001b[0m \u001b[1;32mas\u001b[0m \u001b[0me\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    446\u001b[0m                     \u001b[1;31m# Remove the TypeError from the exception chain in\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\http\\client.py\u001b[0m in \u001b[0;36mgetresponse\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m   1375\u001b[0m         \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1376\u001b[0m             \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 1377\u001b[1;33m                 \u001b[0mresponse\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mbegin\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   1378\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mConnectionError\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1379\u001b[0m                 \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mclose\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\http\\client.py\u001b[0m in \u001b[0;36mbegin\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m    318\u001b[0m         \u001b[1;31m# read until we get a non-100 response\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    319\u001b[0m         \u001b[1;32mwhile\u001b[0m \u001b[1;32mTrue\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 320\u001b[1;33m             \u001b[0mversion\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mstatus\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mreason\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_read_status\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    321\u001b[0m             \u001b[1;32mif\u001b[0m \u001b[0mstatus\u001b[0m \u001b[1;33m!=\u001b[0m \u001b[0mCONTINUE\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    322\u001b[0m                 \u001b[1;32mbreak\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\http\\client.py\u001b[0m in \u001b[0;36m_read_status\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m    279\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    280\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0m_read_status\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 281\u001b[1;33m         \u001b[0mline\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mstr\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mfp\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mreadline\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0m_MAXLINE\u001b[0m \u001b[1;33m+\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m\"iso-8859-1\"\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    282\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[0mlen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mline\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m>\u001b[0m \u001b[0m_MAXLINE\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    283\u001b[0m             \u001b[1;32mraise\u001b[0m \u001b[0mLineTooLong\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m\"status line\"\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\socket.py\u001b[0m in \u001b[0;36mreadinto\u001b[1;34m(self, b)\u001b[0m\n\u001b[0;32m    702\u001b[0m         \u001b[1;32mwhile\u001b[0m \u001b[1;32mTrue\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    703\u001b[0m             \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 704\u001b[1;33m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_sock\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mrecv_into\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mb\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    705\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mtimeout\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    706\u001b[0m                 \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_timeout_occurred\u001b[0m \u001b[1;33m=\u001b[0m \u001b[1;32mTrue\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\ssl.py\u001b[0m in \u001b[0;36mrecv_into\u001b[1;34m(self, buffer, nbytes, flags)\u001b[0m\n\u001b[0;32m   1240\u001b[0m                   \u001b[1;34m\"non-zero flags not allowed in calls to recv_into() on %s\"\u001b[0m \u001b[1;33m%\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1241\u001b[0m                   self.__class__)\n\u001b[1;32m-> 1242\u001b[1;33m             \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mread\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mnbytes\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mbuffer\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   1243\u001b[0m         \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1244\u001b[0m             \u001b[1;32mreturn\u001b[0m \u001b[0msuper\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mrecv_into\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mbuffer\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mnbytes\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mflags\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;32m~\\Anaconda3\\lib\\ssl.py\u001b[0m in \u001b[0;36mread\u001b[1;34m(self, len, buffer)\u001b[0m\n\u001b[0;32m   1098\u001b[0m         \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1099\u001b[0m             \u001b[1;32mif\u001b[0m \u001b[0mbuffer\u001b[0m \u001b[1;32mis\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[1;32mNone\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 1100\u001b[1;33m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_sslobj\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mread\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mlen\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mbuffer\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   1101\u001b[0m             \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   1102\u001b[0m                 \u001b[1;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_sslobj\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mread\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mlen\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
      "\u001b[1;31mKeyboardInterrupt\u001b[0m: "
     ]
    }
   ],
   "source": [
    "# from the result pages we get from the OpenAlex API, extract the data about works\n",
    "def extract_works_from_page(page):\n",
    "    return [work for work in page.get('results') or []]\n",
    "\n",
    "# extract DOI from work\n",
    "def extract_doi(work):\n",
    "    doi=work.get('ids', {}).get('doi') or \"\"\n",
    "    doi_id=doi.replace(\"https://doi.org/\", \"\") if doi else doi\n",
    "    title=work.get('display_name', \"\")\n",
    "    oa=work.get('open_access', {}).get('oa_status')\n",
    "    return doi_id, title, oa\n",
    "\n",
    "def main_search(orcid):\n",
    "    list_of_pages=query_openalex_for_person2works(orcid)\n",
    "    for page in list_of_pages or []:\n",
    "        works=extract_works_from_page(page)\n",
    "        for work in works or []:\n",
    "            doi,title,oa=extract_doi(work)\n",
    "            if doi:\n",
    "                print(f\"{doi}, {title}, Open Access Status: {oa}\")\n",
    "                \n",
    "# main programm:\n",
    "for item in list_of_ids:\n",
    "    main_search(item)                "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f9af2555",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "colab": {
   "collapsed_sections": [],
   "name": "openalex_get_works_by_person.ipynb",
   "provenance": [
    {
     "file_id": "https://github.com/TAPIR-TIB/pidgraph-notebooks/blob/person-works/person-works/openalex_get_works_by_person.ipynb",
     "timestamp": 1643058224827
    },
    {
     "file_id": "https://github.com/TAPIR-TIB/pidgraph-notebooks/blob/person-works/person-works/openalex_get_works_by_person.ipynb",
     "timestamp": 1643040475251
    },
    {
     "file_id": "1neSGbKlkQwjOYX77kpGK14BqT4KpCei0",
     "timestamp": 1643025949695
    }
   ]
  },
  "kernelspec": {
   "display_name": "Python 3 (ipykernel)",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.13"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}