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<html><head>
<script src="example_files/libs/clipboard/clipboard.min.js"></script>
<script src="example_files/libs/quarto-html/quarto.js"></script>
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<link href="example_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="example_files/libs/bootstrap/bootstrap.min.js"></script>
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<link href="example_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light"></head><body class="fullcontent">%%
% Copyright (c) 2017 - 2022, Pascal Wagler;
% Copyright (c) 2014 - 2022, John MacFarlane
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% documentation and/or other materials provided with the distribution.
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% TODO: This doesn't work anymore. I don't know why.
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%%
%% end added
%%
\begin{document}
%%
%% begin titlepage
%%
%%
%% end titlepage
%%
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<main class="content" id="quarto-document-content">
<section id="example" class="level1" data-number="1">
<h1 data-number="1"><span class="header-section-number">1</span> Example</h1>
<p>load IndianPines Datasets</p>
<div class="cell" data-execution_count="1">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> IndianPines <span class="im">import</span> load <span class="im">as</span> load_pines</span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> pandas <span class="im">as</span> pd</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> numpy <span class="im">as</span> np</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<section id="load-background-or-not" class="level2" data-number="1.1">
<h2 data-number="1.1" class="anchored" data-anchor-id="load-background-or-not"><span class="header-section-number">1.1</span> load background or not</h2>
<ul>
<li><code>include_background=True</code>: load background datasets (label background as <code>0</code>) (<em>default</em>)</li>
</ul>
<div class="cell" data-execution_count="2">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a>pines_bgTrue <span class="op">=</span> load_pines(include_background<span class="op">=</span><span class="va">True</span>)</span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a>count <span class="op">=</span> <span class="bu">list</span>()</span>
<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a>c_all <span class="op">=</span> <span class="dv">0</span></span>
<span id="cb2-5"><a href="#cb2-5" aria-hidden="true" tabindex="-1"></a><span class="cf">for</span> t,name <span class="kw">in</span> <span class="bu">enumerate</span>(pines_bgTrue.target_names):</span>
<span id="cb2-6"><a href="#cb2-6" aria-hidden="true" tabindex="-1"></a> c <span class="op">=</span> pines_bgTrue.target[pines_bgTrue.target<span class="op">==</span>t].size</span>
<span id="cb2-7"><a href="#cb2-7" aria-hidden="true" tabindex="-1"></a> count.append(c)</span>
<span id="cb2-8"><a href="#cb2-8" aria-hidden="true" tabindex="-1"></a> c_all <span class="op">+=</span> c</span>
<span id="cb2-9"><a href="#cb2-9" aria-hidden="true" tabindex="-1"></a>count.append(c_all)</span>
<span id="cb2-10"><a href="#cb2-10" aria-hidden="true" tabindex="-1"></a>count <span class="op">=</span> np.array(count, dtype<span class="op">=</span><span class="bu">int</span>)</span>
<span id="cb2-11"><a href="#cb2-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-12"><a href="#cb2-12" aria-hidden="true" tabindex="-1"></a>pd.DataFrame(<span class="bu">dict</span>(target_names<span class="op">=</span>np.hstack([pines_bgTrue.target_names,<span class="st">'SUM'</span>]),count<span class="op">=</span>count))</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-display" data-execution_count="2">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>target_names</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<th>0</th>
<td>background</td>
<td>10776</td>
</tr>
<tr>
<th>1</th>
<td>Alfalfa</td>
<td>46</td>
</tr>
<tr>
<th>2</th>
<td>Corn-notill</td>
<td>1428</td>
</tr>
<tr>
<th>3</th>
<td>Corn-min</td>
<td>830</td>
</tr>
<tr>
<th>4</th>
<td>Corn</td>
<td>237</td>
</tr>
<tr>
<th>5</th>
<td>Grass/Pasture</td>
<td>483</td>
</tr>
<tr>
<th>6</th>
<td>Grass/Trees</td>
<td>730</td>
</tr>
<tr>
<th>7</th>
<td>Grass/pasture-mowed</td>
<td>28</td>
</tr>
<tr>
<th>8</th>
<td>Hay-windrowed</td>
<td>478</td>
</tr>
<tr>
<th>9</th>
<td>Oats</td>
<td>20</td>
</tr>
<tr>
<th>10</th>
<td>Soybeans-notill</td>
<td>972</td>
</tr>
<tr>
<th>11</th>
<td>Soybeans-min</td>
<td>2455</td>
</tr>
<tr>
<th>12</th>
<td>Soybean-clean</td>
<td>593</td>
</tr>
<tr>
<th>13</th>
<td>Wheat</td>
<td>205</td>
</tr>
<tr>
<th>14</th>
<td>Woods</td>
<td>1265</td>
</tr>
<tr>
<th>15</th>
<td>Bldg-Grass-Tree-Drives</td>
<td>386</td>
</tr>
<tr>
<th>16</th>
<td>Stone-steel towers</td>
<td>93</td>
</tr>
<tr>
<th>17</th>
<td>SUM</td>
<td>21025</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>include_background=False</code>: load exclude background, target_names includes <code>background</code></li>
</ul>
<div class="cell" data-execution_count="3">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a>pines_bgFalse <span class="op">=</span> load_pines(include_background<span class="op">=</span><span class="va">False</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="4">
<div class="cell-output cell-output-display" data-execution_count="4">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>target_names</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<th>0</th>
<td>background</td>
<td>0</td>
</tr>
<tr>
<th>1</th>
<td>Alfalfa</td>
<td>46</td>
</tr>
<tr>
<th>2</th>
<td>Corn-notill</td>
<td>1428</td>
</tr>
<tr>
<th>3</th>
<td>Corn-min</td>
<td>830</td>
</tr>
<tr>
<th>4</th>
<td>Corn</td>
<td>237</td>
</tr>
<tr>
<th>5</th>
<td>Grass/Pasture</td>
<td>483</td>
</tr>
<tr>
<th>6</th>
<td>Grass/Trees</td>
<td>730</td>
</tr>
<tr>
<th>7</th>
<td>Grass/pasture-mowed</td>
<td>28</td>
</tr>
<tr>
<th>8</th>
<td>Hay-windrowed</td>
<td>478</td>
</tr>
<tr>
<th>9</th>
<td>Oats</td>
<td>20</td>
</tr>
<tr>
<th>10</th>
<td>Soybeans-notill</td>
<td>972</td>
</tr>
<tr>
<th>11</th>
<td>Soybeans-min</td>
<td>2455</td>
</tr>
<tr>
<th>12</th>
<td>Soybean-clean</td>
<td>593</td>
</tr>
<tr>
<th>13</th>
<td>Wheat</td>
<td>205</td>
</tr>
<tr>
<th>14</th>
<td>Woods</td>
<td>1265</td>
</tr>
<tr>
<th>15</th>
<td>Bldg-Grass-Tree-Drives</td>
<td>386</td>
</tr>
<tr>
<th>16</th>
<td>Stone-steel towers</td>
<td>93</td>
</tr>
<tr>
<th>17</th>
<td>SUM</td>
<td>10249</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</section>
<section id="features" class="level2" data-number="1.2">
<h2 data-number="1.2" class="anchored" data-anchor-id="features"><span class="header-section-number">1.2</span> features</h2>
<section id="load-feature-waterabsorptionchannels-excluded" class="level3" data-number="1.2.1">
<h3 data-number="1.2.1" class="anchored" data-anchor-id="load-feature-waterabsorptionchannels-excluded"><span class="header-section-number">1.2.1</span> load feature WaterAbsorptionChannels excluded</h3>
<ul>
<li><code>exclude_WaterAbsorptionChannels=True</code> : load features WaterAbsorptionChannels excluded (<em>default</em>). feature_names(channel_number) are kept.</li>
</ul>
<div class="cell" data-execution_count="5">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a>pines_exclude_WACs <span class="op">=</span> load_pines(exclude_WaterAbsorptionChannels<span class="op">=</span><span class="va">True</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="6">
<div class="cell-output cell-output-display" data-execution_count="6">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>200</td>
</tr>
<tr>
<th>unique</th>
<td>200</td>
</tr>
<tr>
<th>top</th>
<td>c00</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>exclude_WaterAbsorptionChannels=False</code> : load features WaterAbsorptionChannels included</li>
</ul>
<div class="cell" data-execution_count="7">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a>pines_include_WACs <span class="op">=</span> load_pines(exclude_WaterAbsorptionChannels<span class="op">=</span><span class="va">False</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="8">
<div class="cell-output cell-output-display" data-execution_count="8">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>220</td>
</tr>
<tr>
<th>unique</th>
<td>220</td>
</tr>
<tr>
<th>top</th>
<td>c00</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</section>
<section id="load-feature-dimension-reductioned-pca" class="level3" data-number="1.2.2">
<h3 data-number="1.2.2" class="anchored" data-anchor-id="load-feature-dimension-reductioned-pca"><span class="header-section-number">1.2.2</span> load feature dimension reductioned (PCA)</h3>
<ul>
<li><code>pca=0</code> : no-analyzed (<em>default</em>)</li>
</ul>
<div class="cell" data-execution_count="9">
<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a>pines_pca0 <span class="op">=</span> load_pines(pca<span class="op">=</span><span class="dv">0</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="10">
<div class="cell-output cell-output-display" data-execution_count="10">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>200</td>
</tr>
<tr>
<th>unique</th>
<td>200</td>
</tr>
<tr>
<th>top</th>
<td>c00</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>pca=0.8</code> :</li>
</ul>
<div class="cell" data-execution_count="11">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a>pines_pca_p8 <span class="op">=</span> load_pines(pca<span class="op">=</span><span class="fl">0.8</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="12">
<div class="cell-output cell-output-display" data-execution_count="12">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>2</td>
</tr>
<tr>
<th>unique</th>
<td>2</td>
</tr>
<tr>
<th>top</th>
<td>PC1</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>pca=5</code> : 5 PC</li>
</ul>
<div class="cell" data-execution_count="13">
<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a>pines_pca5 <span class="op">=</span> load_pines(pca<span class="op">=</span><span class="dv">5</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="14">
<div class="cell-output cell-output-display" data-execution_count="14">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>5</td>
</tr>
<tr>
<th>unique</th>
<td>5</td>
</tr>
<tr>
<th>top</th>
<td>PC1</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>pca= -1</code>: no-reduction, but analyzed PCs</li>
</ul>
<div class="cell" data-execution_count="15">
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a>pines_pca_m1 <span class="op">=</span> load_pines(pca<span class="op">=-</span><span class="dv">1</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="16">
<div class="cell-output cell-output-display" data-execution_count="16">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>feature_names</th>
</tr>
</thead>
<tbody>
<tr>
<th>count</th>
<td>200</td>
</tr>
<tr>
<th>unique</th>
<td>200</td>
</tr>
<tr>
<th>top</th>
<td>PC1</td>
</tr>
<tr>
<th>freq</th>
<td>1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</section>
</section>
<section id="targets" class="level2" data-number="1.3">
<h2 data-number="1.3" class="anchored" data-anchor-id="targets"><span class="header-section-number">1.3</span> targets</h2>
<section id="load-target-recategorized" class="level3" data-number="1.3.1">
<h3 data-number="1.3.1" class="anchored" data-anchor-id="load-target-recategorized"><span class="header-section-number">1.3.1</span> load target recategorized</h3>
<ul>
<li><code>recategorize_rule=None</code> : no recategorize (<em>default</em>)</li>
</ul>
<div class="cell" data-execution_count="17">
<div class="sourceCode cell-code" id="cb10"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a>pines_no_recat <span class="op">=</span> load_pines(recategorize_rule<span class="op">=</span><span class="va">None</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="18">
<div class="cell-output cell-output-display" data-execution_count="18">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>target_names</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<th>0</th>
<td>background</td>
<td>10776</td>
</tr>
<tr>
<th>1</th>
<td>Alfalfa</td>
<td>46</td>
</tr>
<tr>
<th>2</th>
<td>Corn-notill</td>
<td>1428</td>
</tr>
<tr>
<th>3</th>
<td>Corn-min</td>
<td>830</td>
</tr>
<tr>
<th>4</th>
<td>Corn</td>
<td>237</td>
</tr>
<tr>
<th>5</th>
<td>Grass/Pasture</td>
<td>483</td>
</tr>
<tr>
<th>6</th>
<td>Grass/Trees</td>
<td>730</td>
</tr>
<tr>
<th>7</th>
<td>Grass/pasture-mowed</td>
<td>28</td>
</tr>
<tr>
<th>8</th>
<td>Hay-windrowed</td>
<td>478</td>
</tr>
<tr>
<th>9</th>
<td>Oats</td>
<td>20</td>
</tr>
<tr>
<th>10</th>
<td>Soybeans-notill</td>
<td>972</td>
</tr>
<tr>
<th>11</th>
<td>Soybeans-min</td>
<td>2455</td>
</tr>
<tr>
<th>12</th>
<td>Soybean-clean</td>
<td>593</td>
</tr>
<tr>
<th>13</th>
<td>Wheat</td>
<td>205</td>
</tr>
<tr>
<th>14</th>
<td>Woods</td>
<td>1265</td>
</tr>
<tr>
<th>15</th>
<td>Bldg-Grass-Tree-Drives</td>
<td>386</td>
</tr>
<tr>
<th>16</th>
<td>Stone-steel towers</td>
<td>93</td>
</tr>
<tr>
<th>17</th>
<td>SUM</td>
<td>21025</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<ul>
<li><code>recategorize_rule='recategorize17to10.csv'</code> : select rule</li>
</ul>
<div class="cell" data-execution_count="19">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a>pines_recat <span class="op">=</span> load_pines(recategorize_rule<span class="op">=</span><span class="st">'recategorize17to10.csv'</span>)</span></code><button title="コピー" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell" data-execution_count="20">
<div class="cell-output cell-output-display" data-execution_count="20">
<div>
<table class="dataframe table table-sm table-striped">
<thead>
<tr>
<th></th>
<th>target_names</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<th>0</th>
<td>BackGround</td>
<td>10824</td>
</tr>
<tr>
<th>1</th>
<td>Alfalfa</td>
<td>46</td>
</tr>
<tr>
<th>2</th>
<td>Corn</td>
<td>2495</td>
</tr>
<tr>
<th>3</th>
<td>Grass</td>
<td>1213</td>
</tr>
<tr>
<th>4</th>
<td>Hay-windrowed</td>
<td>478</td>
</tr>
<tr>
<th>5</th>
<td>Soybeans</td>
<td>4020</td>
</tr>
<tr>
<th>6</th>
<td>Wheat</td>
<td>205</td>
</tr>
<tr>
<th>7</th>
<td>Woods</td>
<td>1265</td>
</tr>
<tr>