diff --git a/idorg-ontology/idorg-ontology-materialized.rdf b/idorg-ontology/idorg-ontology-materialized.rdf index 266ecc5..e3f1c25 100644 --- a/idorg-ontology/idorg-ontology-materialized.rdf +++ b/idorg-ontology/idorg-ontology-materialized.rdf @@ -4050,6 +4050,10 @@ + + + + @@ -8103,6 +8107,10 @@ https://omabrowser.org/oma/home/ + + https://monarchinitiative.org + + 2021-09-17T00:00:00 @@ -11958,6 +11966,10 @@ + + + + DESCRIBE <http://identifiers.org/3dmet> @@ -14417,6 +14429,11 @@ The HEAL platform also offers a secure and cost-effective cloud-computing enviro NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs. + + The Monarch Initiative is an international consortium that leads key global standards and semantic data integration technologies. Monarch is made possible thanks to a diverse and dedicated team of biologists, scientists, and programmers from various schools and institutes: +University of North Carolina, University of Colorado, Lawrence Berkeley National Laboratory, Charite, The Jackson Laboratory, European Bioinformatics Institute, Queen Mary University of London, Johns Hopkins University, Consultants, C-Path, Renaissance Computing Institute, Scientific Advisory Board, Alumni Members, Alumni Groups + + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information. @@ -14878,18 +14895,10 @@ The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of ge The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes. - - A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI. - - RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. - - NCIt through OLS - - HOMD taxon information at The Forsyth Institute @@ -16054,6 +16063,10 @@ components may be proteins, genes/DNA, RNA, or simple molecules. Where the ident SubstrateDB at The Burnham Institute for Medical Research + + The Mondo Disease Ontology (Mondo) aims to harmonize disease definitions across the world. + + The GenoMEL data commons supports the management, analysis and sharing of next generation sequencing data for the GenoMEL research community and aims to accelerate opportunities for discovery of susceptibility genes for melanoma. The data commons supports cross-project analyses by harmonizing data from different projects through the development of a data dictionary and utilization of common workflows, providing an API for data queries, and providing a cloud-based analysis workspace with rich tools and resources. @@ -19463,6 +19476,14 @@ ICE supports the following: (i) Data integration: brings together available data The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology. + + A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI. + + + + NCIt through OLS + + The Identifiers.org Central Registry service provides a centralized directory of Compact Identifiers. This website allows performing searches on the registry by using the search bar on the right side or the Registry Browser. Resource maintainers can also find the Prefix Registration Request form to request a prefix in Identifiers.org for their databases or services. @@ -19619,23 +19640,23 @@ ICE supports the following: (i) Data integration: brings together available data 2024-05-31T15:27:28.981 - + - + - + - + - + @@ -20170,6 +20191,7 @@ ICE supports the following: (i) Data integration: brings together available data + @@ -20497,6 +20519,18 @@ ICE supports the following: (i) Data integration: brings together available data + + + + - - + + @@ -20531,11 +20559,17 @@ WHERE { } - - + + @@ -20547,18 +20581,6 @@ WHERE { } - - - - @@ -21943,6 +21965,10 @@ LIMIT 10 + + + + @@ -23999,6 +24025,10 @@ LIMIT 10 \d{2,7}-\d{2}-\d|DTXSID\d{7,9}|[A-Z]{14}-[A-Z]{8}[SN][A-Z]-[A-Z]$ + + ^\d{7}$ + + ECO:\d{7}$ @@ -33647,6 +33677,10 @@ LIMIT 10 false + + false + + @@ -37695,6 +37729,10 @@ LIMIT 10 + + + + @@ -39083,6 +39121,10 @@ LIMIT 10 + + + + @@ -45119,6 +45161,10 @@ LIMIT 10 CH + + US + + 3dmet @@ -47191,6 +47237,10 @@ LIMIT 10 molmedb + + mondo + + morpheus @@ -52711,6 +52761,10 @@ LIMIT 10 false + + true + + @@ -55647,14 +55701,6 @@ LIMIT 10 false - - false - - - - false - - true @@ -55667,10 +55713,6 @@ LIMIT 10 false - - false - - true @@ -56815,6 +56857,10 @@ LIMIT 10 false + + false + + false @@ -60087,6 +60133,10 @@ LIMIT 10 false + + false + + false @@ -60135,6 +60185,18 @@ LIMIT 10 false + + false + + + + false + + + + false + + LinJ.20.0070 @@ -60203,6 +60265,10 @@ LIMIT 10 DTXSID7032004 + + 0004994 + + 0000006 @@ -63512,54 +63578,54 @@ LIMIT 10 - - List namespaces and their names + + Using DCAT to access registry - - These are ISO 3166 Alpha-2 codes + + Short explanation on what cause the resource to become deprecated + + + + Usage of id:active subgraph to limit resolution Get full description of namespace - - URL with more information on how to authenticate to access resource + + List namespaces and their names Approximated date where the resource or namespace become became offline - - Reverse resolution using owl:sameAs via our virtual triple store + + These are ISO 3166 Alpha-2 codes - - URL resolution using owl:sameAs via our virtual triple store + + URL with more information on how to authenticate to access resource List namespaces and their url patterns - - Using DCAT to access registry - - - - Short explanation on what cause the resource to become deprecated - - - - Usage of id:active subgraph to limit resolution + + URL resolution using owl:sameAs via our virtual triple store Brief description on how to authenticate to access resource + + Reverse resolution using owl:sameAs via our virtual triple store + + 2019-06-11T14:15:28.483 @@ -65948,6 +66014,10 @@ LIMIT 10 2019-12-16T17:30:29.41 + + 2025-02-03T14:36:56.661 + + 2019-06-11T14:16:55.375 @@ -66656,22 +66726,10 @@ LIMIT 10 2019-06-11T14:17:10.888 - - 2019-06-11T14:15:31.92 - - - - 2019-06-11T14:16:23.594 - - 2020-09-23T11:03:41.882 - - 2019-06-11T14:17:33.259 - - 2022-02-27T20:37:55.932 @@ -70160,6 +70218,10 @@ LIMIT 10 2019-10-01T12:04:53.779 + + 2025-02-03T14:36:56.65 + + 2019-10-01T11:58:20.61 @@ -70980,6 +71042,18 @@ LIMIT 10 2024-10-30T14:01:45.6 + + 2019-06-11T14:15:31.92 + + + + 2019-06-11T14:16:23.594 + + + + 2019-06-11T14:17:33.259 + + MIR:00000106 @@ -71048,6 +71122,10 @@ LIMIT 10 MIR:00001082 + + MIR:00001089 + + MIR:00000055 @@ -78400,6 +78478,10 @@ LIMIT 10 + + + + ^http://identifiers\\.org/[a-z0-9_.]+$ @@ -82453,6 +82535,10 @@ LIMIT 10 https://omabrowser.org/oma/vps/{$id} + + http://purl.obolibrary.org/obo/MONDO_{$id} + + https://www.ebi.ac.uk/chebi/ @@ -86501,6 +86587,10 @@ LIMIT 10 https://omabrowser.org/oma/home/ + + https://monarchinitiative.org + + ebi @@ -88217,6 +88307,10 @@ LIMIT 10 ncbi + + mondo + + @@ -92265,6 +92359,10 @@ LIMIT 10 + + + + @@ -94678,6 +94776,10 @@ LIMIT 10 2019-06-11T14:17:21.442 + + 2025-02-03T14:36:56.661 + + 2019-06-11T14:16:55.375 @@ -95370,22 +95472,6 @@ LIMIT 10 2019-06-11T14:17:10.888 - - 2019-06-11T14:15:31.92 - - - - 2019-06-11T14:16:23.594 - - - - 2019-06-11T14:17:33.259 - - - - 2019-06-11T14:17:50.73 - - 2022-02-27T20:37:55.932 @@ -98874,6 +98960,10 @@ LIMIT 10 2019-06-11T14:17:07.774 + + 2025-02-03T14:36:56.65 + + 2019-06-11T14:18:06.853 @@ -99690,6 +99780,22 @@ LIMIT 10 2019-09-24T11:03:08.927 + + 2019-06-11T14:15:31.92 + + + + 2019-06-11T14:16:23.594 + + + + 2019-06-11T14:17:33.259 + + + + 2019-06-11T14:17:50.73 + + @@ -101394,6 +101500,10 @@ LIMIT 10 + + + + @@ -102734,10 +102844,6 @@ LIMIT 10 - - - - @@ -105206,6 +105312,10 @@ LIMIT 10 + + + + @@ -107110,56 +107220,60 @@ LIMIT 10 - - + + - - + + - - + + - - + + - - - - - - + + - - + + - - + + - - + + - - + + - - + + + + + + + + + + @@ -108866,6 +108980,10 @@ LIMIT 10 BioNumbers + + Monarch Initiative + + GRIN at Maryland @@ -110206,10 +110324,6 @@ LIMIT 10 Austrian Library Network - - NCIt through OLS - - Oryza Tag Line @@ -112678,6 +112792,10 @@ LIMIT 10 HCVDB at CNRS + + Mondo Disease Ontology + + TarBase @@ -114582,6 +114700,10 @@ LIMIT 10 Golm Metabolome Database + + NCIt through OLS + + Identifiers.org Central Registry