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Unclear error when storing data.frame as edge attributes #1669

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dgkf opened this issue Jan 31, 2025 · 0 comments
Open

Unclear error when storing data.frame as edge attributes #1669

dgkf opened this issue Jan 31, 2025 · 0 comments

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@dgkf
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dgkf commented Jan 31, 2025

What happens, and what did you expect instead?

Not sure if these are bugs, or just user experiences that result in unclear behaviors. Reporting primarily for visibility.

When a user accidentally uses a data.frame for edge attributes, many operations continue to work fine but errors will arise when subsetting when indices can't be recycled. Arises from this line, which iterates over (an assumed list) of attributes, subsetting with the indices.

for (i in seq_along(attrs)) attrs[[i]] <- attrs[[i]][xvec]

When the attributes are instead a data.frame, assignment with a value that can't be recycled to the data frame row count will throw an error.

When trying to create edge attributes with a data.frame, it would be very helpful if it was run through as.list automatically to avoid these pitfalls or if an error was raised to warn that this is unsupported.

To reproduce

library(igraph)  # v2.1.4

g <- make_tree(10, 3)
n_edges <- length(E(g))

# whoops! igraph does not support data.frames
igraph::edge.attributes(g) <- head(mtcars, n_edges)

# but they seem to work fine in many cases, easy to miss wrong behavior
E(g)[cyl == 4]
#> + 3/9 edges from 2eeb173:
#> [1] 1-> 4 3-> 9 3->10

E(g)[1:3]
#> + 3/9 edges from 2eeb173:
#> [1] 1->2 1->3 1->4

E(g)[c(1, 1)]
#> + 2/9 edges from 2eeb173:
#> Error in `[[<-.data.frame`(`*tmp*`, i, value = c(21, 21)) :
#>  replacement has 2 rows, data has 9

System information

R version 4.4.1 (2024-06-14)
Platform: aarch64-unknown-linux-gnu
Running under: Ubuntu 22.04.4 LTS (via rocker/r-ver image on podman)

Matrix products: default
BLAS:   /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

time zone: Etc/UTC
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] igraph_2.1.4

loaded via a namespace (and not attached):
[1] compiler_4.4.1  magrittr_2.0.3  cli_3.6.3       lifecycle_1.0.4
[5] pkgconfig_2.0.3 rlang_1.1.5    
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