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Not sure if these are bugs, or just user experiences that result in unclear behaviors. Reporting primarily for visibility.
When a user accidentally uses a data.frame for edge attributes, many operations continue to work fine but errors will arise when subsetting when indices can't be recycled. Arises from this line, which iterates over (an assumed list) of attributes, subsetting with the indices.
for (iin seq_along(attrs)) attrs[[i]] <-attrs[[i]][xvec]
When the attributes are instead a data.frame, assignment with a value that can't be recycled to the data frame row count will throw an error.
When trying to create edge attributes with a data.frame, it would be very helpful if it was run through as.list automatically to avoid these pitfalls or if an error was raised to warn that this is unsupported.
To reproduce
library(igraph) # v2.1.4g<- make_tree(10, 3)
n_edges<- length(E(g))
# whoops! igraph does not support data.framesigraph::edge.attributes(g) <- head(mtcars, n_edges)
# but they seem to work fine in many cases, easy to miss wrong behavior
E(g)[cyl==4]
#> + 3/9 edges from 2eeb173:#> [1] 1-> 4 3-> 9 3->10
E(g)[1:3]
#> + 3/9 edges from 2eeb173:#> [1] 1->2 1->3 1->4
E(g)[c(1, 1)]
#> + 2/9 edges from 2eeb173:#> Error in `[[<-.data.frame`(`*tmp*`, i, value = c(21, 21)) :#> replacement has 2 rows, data has 9
System information
R version 4.4.1 (2024-06-14)
Platform: aarch64-unknown-linux-gnu
Running under: Ubuntu 22.04.4 LTS (via rocker/r-ver image on podman)
Matrix products: default
BLAS: /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: Etc/UTC
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] igraph_2.1.4
loaded via a namespace (and not attached):
[1] compiler_4.4.1 magrittr_2.0.3 cli_3.6.3 lifecycle_1.0.4
[5] pkgconfig_2.0.3 rlang_1.1.5
The text was updated successfully, but these errors were encountered:
What happens, and what did you expect instead?
When a user accidentally uses a
data.frame
for edge attributes, many operations continue to work fine but errors will arise when subsetting when indices can't be recycled. Arises from this line, which iterates over (an assumedlist
) of attributes, subsetting with the indices.rigraph/R/iterators.R
Line 964 in 2a84bc2
When the attributes are instead a
data.frame
, assignment with a value that can't be recycled to the data frame row count will throw an error.When trying to create edge attributes with a
data.frame
, it would be very helpful if it was run throughas.list
automatically to avoid these pitfalls or if an error was raised to warn that this is unsupported.To reproduce
System information
The text was updated successfully, but these errors were encountered: