From 25d1649b8f2343a4a715ef59b1bcb6e296bbcfee Mon Sep 17 00:00:00 2001 From: insilicolife Date: Mon, 30 Sep 2019 12:05:54 +0000 Subject: [PATCH] fix --- MICTI.egg-info/PKG-INFO | 2 +- MICTI.egg-info/requires.txt | 1 + MICTI/MARKERS.py | 6 +++--- MICTI/__pycache__/MARKERS.cpython-35.pyc | Bin 23614 -> 23636 bytes setup.py | 2 +- 5 files changed, 6 insertions(+), 5 deletions(-) diff --git a/MICTI.egg-info/PKG-INFO b/MICTI.egg-info/PKG-INFO index 74b1221..2b6dccd 100644 --- a/MICTI.egg-info/PKG-INFO +++ b/MICTI.egg-info/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 2.1 Name: MICTI -Version: 0.1.4 +Version: 0.1.5 Summary: Feature extraction approach in single-cell gene expression profiling for cell-type marker identification. Home-page: https://github.com/insilicolife/micti Author: Nigatu Ayele diff --git a/MICTI.egg-info/requires.txt b/MICTI.egg-info/requires.txt index 335dd13..e764993 100644 --- a/MICTI.egg-info/requires.txt +++ b/MICTI.egg-info/requires.txt @@ -9,3 +9,4 @@ seaborn pyensembl bs4 requests +html5lib diff --git a/MICTI/MARKERS.py b/MICTI/MARKERS.py index 7770855..73aaeae 100644 --- a/MICTI/MARKERS.py +++ b/MICTI/MARKERS.py @@ -199,13 +199,13 @@ def get_Visualization(self,dim=2,method="PCA"): def get_cluster_data(self, cluster_number): - return self.data.toarray()[np.in1d(np.array(self.cluster_assignment), cluster_number),:], self.cellNames[np.in1d(np.array(self.cluster_assignment), cluster_number)] + return self.data.toarray()[np.in1d(self.cluster_assignment, cluster_number),:], self.cellNames[np.in1d(self.cluster_assignment, cluster_number)] def get_cluster_ICF_data(self, cluster_number): - return self.ICF(self.data[np.in1d(np.array(self.cluster_assignment), cluster_number),:]) + return self.ICF(self.data[np.in1d(self.cluster_assignment, cluster_number),:]) def get_cluster_CF_data(self,cluster_number): - return self.CF(self.data[np.in1d(np.array(self.cluster_assignment), cluster_number),:]) + return self.CF(self.data[np.in1d(self.cluster_assignment, cluster_number),:]) def get_selected_cluster_marker(self, clusters): diff --git a/MICTI/__pycache__/MARKERS.cpython-35.pyc b/MICTI/__pycache__/MARKERS.cpython-35.pyc index f2f212a0979f4730a96d8b00629dfb5c790c0e22..b2646607638b5d8bf0c7e9e44b02ae8ead8ebd8e 100644 GIT binary patch delta 1356 zcmZvbZETZO6vuno_32(5GsOv8tQ&RUp0PD<%tQ(6-Wy~x@2TT7cbxLCEiB9*Ke=*V#15k0``%0o-HcpS-GN17ZZ zy-r7$PMvxlPnA~`+M1C_j>Jvd6^SKzrhJBW@Lm35V%}M|l#i}><;vJf`A<2o-r;aK z#Ld78;2GYqa#e8(vJB_|27!!~URmPm*(0^SEbEuTS98@2Kf+x=y@c&b3`Vn??uEAs zP>G&{x&wF~*a%z)sEir@v$9=#5%Eh_hrWko%|BH6{c4jQY1^(LL)bZqhecA?L?tG^ z08FvIdO^0UpgK&IC{w6fbF zV&MtkT|OPCBFp+UaF({c3TK~0$`cO^8U2H1%9AujG!S`E?1!DFqL>ji#cP;*KtlKa zU!P=Sl0y8uS>hnps2j*Yy$`ejswbN{SX)|p2=O$q76=1}fg|dA$7|1N*)n-koqP*< zeP+zOuRkKQ9pPy0a%*2*8I{e*1$NFurWuz#h=@c|&&_7*#!eZ&xaMwp&$^|)L!)!n z*xE^__X|0oyTm-k8-Xvms$rH+^W}zm@AnuCh!Xf$0grN1u!SZ#9ejtja6s)MuEV(URFoq(@;tx8vKtp#3&kF_-~Q;!P0xAVJksck|G z2$8b#)|*uP8|JP42h~uQtaSUlyZjTW`?g+lw0$8p)+o+mM3azh$|mQ<)+*k=F|k~Q z>N{w{jGOYwsbVJhrp{^YBdq(_y3jdCHR=Zq!FWU>QcY3~BOC$#lh0bX^CxOiXHyU7 z66UB>_d}_xJOfn$xPcphFvd|LUDU^2e`OxsaPh+=9U^nnA@G|f^aK)EGsNVJmP#*%Sl0~TB z0d10`I>6rW8XDvE;k||1q;I?9BmG8?80DYC+l$_kPS}$$jh+D!6OZ%w HrW1by6DDNN8*w)F!1Sw03&3Jej9ebF?uA8?V zZexIooo|VN2btYOL73o3Nal?OAsKHfiVL7%oE0^EFeV~je2GLz^#1Q6QDgk_%m4h( zx%b?jd!JrD%Epf}=gjnUr*CBb>R;B5Ie9)a#pe8ljK#(A*-tQLQjNRWnY-R@3mD9A z=ycFsM3e5*IooYE8=nUhNEmir0=jhrbz55B5Z6@@ZPIl|F6uU0D7-Jwpz2T?Z%P^Wwa>LDNrECucbRL2A@ ztDHq1qe6QX-X0M$l8kMqo27+pkY<tit7&;XA^Z6^XT&X$@h%?h$zf z+-eK2i>qI2YKs~I_xt?(5^b&9Q1iT8kkUIsJz+UgegXSk1U>~)z*oQ(;A`L;KsA4X zitFdI^VCwG&%UJ1^@pc_f!rkUxv26@*fllYbF_15si;`Ag~>x6X`ICpbhgo#qh2R& zBIOL?fi!a7$$77EJz%lypRh^UZFr!ri{#?TH1|hRw{N=p$l|MgPuKB}k2>k)vU$v_KAdit8zsUXCe`Bzdw_qn5Wh8DW3B;Y z)XTXJrJAjUQrCEvSRgB78{%hybHGzn6iBdN#b{uLLsKK1pcBC&`%RnpE*NEOgqAno z$F5O-^MfU7`zox$xBu6_$saH<2Wcp6qaT}lR=o&&C-4%m3wRAU4E*h@La3hi8L0OG zb+R9zeg@Q!xdHV%aLYy~SG2PORAN@KZM4c9O5Y;=R9aWBd{w-k94nujA*5sKF)P&C M$)o%k8eaL{pTZP%8vp