From ba0e27f75c49e5e8fe033a07ab797b2cd13fce19 Mon Sep 17 00:00:00 2001 From: insilicolife Date: Thu, 20 Jun 2019 14:15:26 +0000 Subject: [PATCH] MICTI --- ...orial-checkpoint.ipynb => MICTI_tutorial-checkpoint.ipynb} | 0 MICTI tutorial.ipynb => docs/source/MICTI_tutorial.ipynb | 0 docs/source/installation.rst | 2 +- docs/source/tutorials.rst | 4 ++-- setup.py | 4 ++-- 5 files changed, 5 insertions(+), 5 deletions(-) rename .ipynb_checkpoints/{MICTI tutorial-checkpoint.ipynb => MICTI_tutorial-checkpoint.ipynb} (100%) rename MICTI tutorial.ipynb => docs/source/MICTI_tutorial.ipynb (100%) diff --git a/.ipynb_checkpoints/MICTI tutorial-checkpoint.ipynb b/.ipynb_checkpoints/MICTI_tutorial-checkpoint.ipynb similarity index 100% rename from .ipynb_checkpoints/MICTI tutorial-checkpoint.ipynb rename to .ipynb_checkpoints/MICTI_tutorial-checkpoint.ipynb diff --git a/MICTI tutorial.ipynb b/docs/source/MICTI_tutorial.ipynb similarity index 100% rename from MICTI tutorial.ipynb rename to docs/source/MICTI_tutorial.ipynb diff --git a/docs/source/installation.rst b/docs/source/installation.rst index d7d49cc..919d7d2 100644 --- a/docs/source/installation.rst +++ b/docs/source/installation.rst @@ -31,4 +31,4 @@ Installation :: - $from MICTI import * + $from MICTI import MARKER diff --git a/docs/source/tutorials.rst b/docs/source/tutorials.rst index 7c420d1..7a5ec7a 100644 --- a/docs/source/tutorials.rst +++ b/docs/source/tutorials.rst @@ -108,8 +108,8 @@ Marker genes for each cluster +---------+-----------+--------------+--------------+ -| Genes | Z_scores | fdr | p_value | -| | | | | +| Genes | Z_scores | Adj P_value | p_value | +| | | | | +=========+===========+==============+==============+ |HLA-DRA | 40.605319 | 0.000000e+00 | 0.000000e+00| +---------+-----------+--------------+--------------+ diff --git a/setup.py b/setup.py index 05095a8..be6d5ba 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="MICTI", - version="0.1.2", + version="0.1.3", author="Nigatu Ayele", author_email="naodm2006awet4@gmail.com", description="Feature extraction approach in single-cell gene expression profiling for cell-type marker identification.", @@ -13,7 +13,7 @@ long_description_content_type="text/markdown", url="https://github.com/insilicolife/micti", packages=setuptools.find_packages(), - install_requires=['numpy', 'pandas','scipy','scikit-learn', 'matplotlib', 'gprofiler', 'seaborn','pyensembl'], + install_requires=['numpy', 'pandas','scipy','scikit-learn', 'matplotlib','mpl_toolkits','pylab','gensim', 'gprofiler', 'seaborn','pyensembl', 'bs4','urllib','requests','json',"setuptools"], classifiers=( "Programming Language :: Python :: 3", "License :: OSI Approved :: MIT License",