kimonoloader.ipy

# -*- coding: utf-8 -*-
"""
Import libraries for normal notebook set up

Created on Wed Aug 17 13:31:02 2017

@author: Kimmo
"""
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
%matplotlib inline
# some basic plotting directives
%config InlineBackend.figure_format = "retina"
plt.rcParams['savefig.dpi'] = 200
# plt.rcParams['figure.autolayout'] = False
plt.rcParams['figure.figsize'] = 20, 12
plt.rcParams['axes.labelsize'] = 18
plt.rcParams['axes.titlesize'] = 20
plt.rcParams['font.size'] = 16
plt.rcParams['lines.linewidth'] = 2.0
plt.rcParams['lines.markersize'] = 8
plt.rcParams['legend.fontsize'] = 14
plt.rcParams['font.family'] = "serif"
plt.rcParams['font.serif'] = "cm"
sns.set(rc={"figure.figsize": (20, 12)})
sns.set_context("notebook", font_scale=1.1)
sns.set_style("whitegrid") #"ticks"
# Watermark
%load_ext watermark
%watermark -a "Automated supervised learning pipeline for non-targeted GC-MS data analysis Siren et al.," -d -t -v -p seaborn,pandas 
# Show all output values
# from IPython.core.interactiveshell import InteractiveShell
# InteractiveShell.ast_node_interactivity = "last" #"last"
# Set Pandas display options for easier reading
pd.set_option("max_colwidth", 100)
pd.set_option("display.max_rows", 1000)
pd.set_option("display.max_columns", 9001)  # there is a scrollbar and '...' just looks stupid
pd.set_option('display.float_format', lambda x: '{:,.2f}'.format(x))