From b5086abdb63884d4035176834b02471688277ccf Mon Sep 17 00:00:00 2001
From: linozen <linus@sehn.tech>
Date: Tue, 14 Sep 2021 16:37:24 +0200
Subject: [PATCH] new Dockerfiles and add gender

---
 Dockerfile         |   38 +-
 explorer/civsoc.py |    1 +
 explorer/media.py  |   18 +
 explorer/merged.py |   23 +-
 poetry.lock        | 2009 ++++++++++++++++++++++++++++++++++++++++++++
 pyproject.toml     |   20 +
 6 files changed, 2087 insertions(+), 22 deletions(-)
 create mode 100644 poetry.lock
 create mode 100644 pyproject.toml

diff --git a/Dockerfile b/Dockerfile
index a7a3e2a..2f44bb8 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,25 +1,23 @@
-FROM python:3.9-slim-buster
+FROM bitnami/python:3.9 as base
+WORKDIR /app
 
-RUN apt-get update \
-    && apt-get install build-essential make gcc -y \
-    && apt-get install dpkg-dev -y \
-    && apt-get install libjpeg-dev -y \
-    && apt-get upgrade -y
+# Install some build dependencies
+RUN install_packages build-essential make gcc dpkg-dev libjpeg-dev sudo dbus-tests
 
-RUN useradd --create-home --uid 9000 nonroot
-USER nonroot
-WORKDIR /home/nonroot/app
-COPY --chown=nonroot:nonroot . .
-ENV PATH="/home/nonroot/.local/bin:${PATH}"
-RUN python3 -m pip install --user pipenv
-RUN pipenv install
+# Set path and install poetry in it
+ENV PATH /root/.local/bin:$PATH
+RUN curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/install-poetry.py | python -
 
-USER root
-RUN apt-get remove -y --purge make gcc build-essential \
-    && apt-get auto-remove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && find /usr/local/lib/python3.9 -name "*.pyc" -type f -delete
+# We don't need poetry to create virtual environments; global site is just fine
+RUN poetry config virtualenvs.create false
 
-USER nonroot
+# Install project dependencies
+COPY pyproject.toml poetry.lock /app/
+RUN poetry install
+
+# Copy files
+COPY . .
+
+# Expoe ports and provide entrypoint
 EXPOSE 8501-8503
-ENTRYPOINT [ "pipenv", "run" ]
+ENTRYPOINT [ "poetry", "run" ]
diff --git a/explorer/civsoc.py b/explorer/civsoc.py
index c93a010..f8cebd8 100644
--- a/explorer/civsoc.py
+++ b/explorer/civsoc.py
@@ -1118,6 +1118,7 @@ def get_cs_df():
             }
         )
 
+df["CSgender"] = df["CSgender"].fillna("Not specified")
 df["CSgender"] = df["CSgender"].replace(
     {
         "AO01": "Woman",
diff --git a/explorer/media.py b/explorer/media.py
index 8039164..5685830 100644
--- a/explorer/media.py
+++ b/explorer/media.py
@@ -902,6 +902,7 @@ def get_ms_df():
             }
         )
 
+df["MSgender"] = df["MSgender"].fillna("Not specified")
 df["MSgender"] = df["MSgender"].replace(
     {
         "AO01": "Woman",
@@ -1119,6 +1120,23 @@ def callback():
         use_container_width=True,
     )
 
+    st.write("### Gender `[MSgender]`")
+    gender_counts = df[filter]["MSgender"].value_counts()
+    st.plotly_chart(
+        render_pie_chart(
+            df[filter],
+            values=gender_counts,
+            names=gender_counts.index,
+            color=gender_counts.index,
+            color_discrete_map={
+                "Not specified": px.colors.qualitative.Prism[10],
+                "Male": px.colors.qualitative.Prism[9],
+                "Female": px.colors.qualitative.Prism[7],
+                "Other": px.colors.qualitative.Prism[5],
+            },
+        ),
+        use_container_width=True,
+    )
 if selected_section == "Resources":
     st.write("# Resources")
 
diff --git a/explorer/merged.py b/explorer/merged.py
index ad481bd..ece57d2 100644
--- a/explorer/merged.py
+++ b/explorer/merged.py
@@ -539,13 +539,14 @@ def get_merged_ms_df():
     }
 )
 
-df["gender"] = df["gender"].fillna("Other")
+df["gender"] = df["gender"].fillna("Not specified")
 df["gender"] = df["gender"].replace(
     {
         "AO01": "Female",
         "AO02": "Non-binary",
         "AO03": "Male",
-        "AO04": "Other",
+        "AO04": "I prefer not to say",
+        "AO05": "Other",
     }
 )
 
@@ -1052,6 +1053,24 @@ def callback():
         use_container_width=True,
     )
 
+    st.write("### Gender `[gender]`")
+    gender_counts = df[filter]["gender"].value_counts()
+    st.plotly_chart(
+        render_pie_chart(
+            df[filter],
+            values=gender_counts,
+            names=gender_counts.index,
+            color=gender_counts.index,
+            color_discrete_map={
+                "Not specified": px.colors.qualitative.Prism[10],
+                "Male": px.colors.qualitative.Prism[9],
+                "Female": px.colors.qualitative.Prism[7],
+                "Other": px.colors.qualitative.Prism[5],
+            },
+        ),
+        use_container_width=True,
+    )
+
 if selected_section == "Resources":
     st.write("# Resources")
 
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 0000000..d2391c5
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,2009 @@
+[[package]]
+name = "altair"
+version = "4.1.0"
+description = "Altair: A declarative statistical visualization library for Python."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+entrypoints = "*"
+jinja2 = "*"
+jsonschema = "*"
+numpy = "*"
+pandas = ">=0.18"
+toolz = "*"
+
+[package.extras]
+dev = ["black", "docutils", "ipython", "flake8", "pytest", "sphinx", "m2r", "vega-datasets", "recommonmark"]
+
+[[package]]
+name = "appnope"
+version = "0.1.2"
+description = "Disable App Nap on macOS >= 10.9"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "argon2-cffi"
+version = "21.1.0"
+description = "The secure Argon2 password hashing algorithm."
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+cffi = ">=1.0.0"
+
+[package.extras]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "furo", "wheel", "pre-commit"]
+docs = ["sphinx", "furo"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"]
+
+[[package]]
+name = "astor"
+version = "0.8.1"
+description = "Read/rewrite/write Python ASTs"
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
+
+[[package]]
+name = "attrs"
+version = "21.2.0"
+description = "Classes Without Boilerplate"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[package.extras]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+
+[[package]]
+name = "backcall"
+version = "0.2.0"
+description = "Specifications for callback functions passed in to an API"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "base58"
+version = "2.1.0"
+description = "Base58 and Base58Check implementation."
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.extras]
+tests = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "PyHamcrest (>=2.0.2)", "coveralls", "pytest-benchmark"]
+
+[[package]]
+name = "bleach"
+version = "4.1.0"
+description = "An easy safelist-based HTML-sanitizing tool."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+packaging = "*"
+six = ">=1.9.0"
+webencodings = "*"
+
+[[package]]
+name = "blinker"
+version = "1.4"
+description = "Fast, simple object-to-object and broadcast signaling"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "cachetools"
+version = "4.2.2"
+description = "Extensible memoizing collections and decorators"
+category = "main"
+optional = false
+python-versions = "~=3.5"
+
+[[package]]
+name = "certifi"
+version = "2021.5.30"
+description = "Python package for providing Mozilla's CA Bundle."
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "cffi"
+version = "1.14.6"
+description = "Foreign Function Interface for Python calling C code."
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pycparser = "*"
+
+[[package]]
+name = "charset-normalizer"
+version = "2.0.4"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+category = "main"
+optional = false
+python-versions = ">=3.5.0"
+
+[package.extras]
+unicode_backport = ["unicodedata2"]
+
+[[package]]
+name = "click"
+version = "7.1.2"
+description = "Composable command line interface toolkit"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[[package]]
+name = "colorama"
+version = "0.4.4"
+description = "Cross-platform colored terminal text."
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[[package]]
+name = "cycler"
+version = "0.10.0"
+description = "Composable style cycles"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+six = "*"
+
+[[package]]
+name = "debugpy"
+version = "1.4.3"
+description = "An implementation of the Debug Adapter Protocol for Python"
+category = "main"
+optional = false
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
+
+[[package]]
+name = "decorator"
+version = "5.1.0"
+description = "Decorators for Humans"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[[package]]
+name = "defusedxml"
+version = "0.7.1"
+description = "XML bomb protection for Python stdlib modules"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[[package]]
+name = "entrypoints"
+version = "0.3"
+description = "Discover and load entry points from installed packages."
+category = "main"
+optional = false
+python-versions = ">=2.7"
+
+[[package]]
+name = "et-xmlfile"
+version = "1.1.0"
+description = "An implementation of lxml.xmlfile for the standard library"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "gitdb"
+version = "4.0.7"
+description = "Git Object Database"
+category = "main"
+optional = false
+python-versions = ">=3.4"
+
+[package.dependencies]
+smmap = ">=3.0.1,<5"
+
+[[package]]
+name = "gitpython"
+version = "3.1.23"
+description = "GitPython is a python library used to interact with Git repositories"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+gitdb = ">=4.0.1,<5"
+typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.10\""}
+
+[[package]]
+name = "idna"
+version = "3.2"
+description = "Internationalized Domain Names in Applications (IDNA)"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[[package]]
+name = "ipykernel"
+version = "6.4.1"
+description = "IPython Kernel for Jupyter"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+appnope = {version = "*", markers = "platform_system == \"Darwin\""}
+debugpy = ">=1.0.0,<2.0"
+ipython = ">=7.23.1,<8.0"
+ipython-genutils = "*"
+jupyter-client = "<8.0"
+matplotlib-inline = ">=0.1.0,<0.2.0"
+tornado = ">=4.2,<7.0"
+traitlets = ">=4.1.0,<6.0"
+
+[package.extras]
+test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"]
+
+[[package]]
+name = "ipython"
+version = "7.27.0"
+description = "IPython: Productive Interactive Computing"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+appnope = {version = "*", markers = "sys_platform == \"darwin\""}
+backcall = "*"
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+decorator = "*"
+jedi = ">=0.16"
+matplotlib-inline = "*"
+pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
+pickleshare = "*"
+prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
+pygments = "*"
+traitlets = ">=4.2"
+
+[package.extras]
+all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"]
+doc = ["Sphinx (>=1.3)"]
+kernel = ["ipykernel"]
+nbconvert = ["nbconvert"]
+nbformat = ["nbformat"]
+notebook = ["notebook", "ipywidgets"]
+parallel = ["ipyparallel"]
+qtconsole = ["qtconsole"]
+test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"]
+
+[[package]]
+name = "ipython-genutils"
+version = "0.2.0"
+description = "Vestigial utilities from IPython"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "ipywidgets"
+version = "7.6.5"
+description = "IPython HTML widgets for Jupyter"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+ipykernel = ">=4.5.1"
+ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""}
+ipython-genutils = ">=0.2.0,<0.3.0"
+jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""}
+nbformat = ">=4.2.0"
+traitlets = ">=4.3.1"
+widgetsnbextension = ">=3.5.0,<3.6.0"
+
+[package.extras]
+test = ["pytest (>=3.6.0)", "pytest-cov", "mock"]
+
+[[package]]
+name = "jedi"
+version = "0.18.0"
+description = "An autocompletion tool for Python that can be used for text editors."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+parso = ">=0.8.0,<0.9.0"
+
+[package.extras]
+qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
+testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]
+
+[[package]]
+name = "jinja2"
+version = "3.0.1"
+description = "A very fast and expressive template engine."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
+[[package]]
+name = "joblib"
+version = "1.0.1"
+description = "Lightweight pipelining with Python functions"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "jsonschema"
+version = "3.2.0"
+description = "An implementation of JSON Schema validation for Python"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+attrs = ">=17.4.0"
+pyrsistent = ">=0.14.0"
+six = ">=1.11.0"
+
+[package.extras]
+format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"]
+format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"]
+
+[[package]]
+name = "jupyter-client"
+version = "7.0.2"
+description = "Jupyter protocol implementation and client libraries"
+category = "main"
+optional = false
+python-versions = ">=3.6.1"
+
+[package.dependencies]
+entrypoints = "*"
+jupyter-core = ">=4.6.0"
+nest-asyncio = ">=1.5"
+python-dateutil = ">=2.1"
+pyzmq = ">=13"
+tornado = ">=4.1"
+traitlets = "*"
+
+[package.extras]
+doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
+test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"]
+
+[[package]]
+name = "jupyter-core"
+version = "4.7.1"
+description = "Jupyter core package. A base package on which Jupyter projects rely."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""}
+traitlets = "*"
+
+[[package]]
+name = "jupyterlab-pygments"
+version = "0.1.2"
+description = "Pygments theme using JupyterLab CSS variables"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pygments = ">=2.4.1,<3"
+
+[[package]]
+name = "jupyterlab-widgets"
+version = "1.0.2"
+description = "A JupyterLab extension."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "kiwisolver"
+version = "1.3.2"
+description = "A fast implementation of the Cassowary constraint solver"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "markupsafe"
+version = "2.0.1"
+description = "Safely add untrusted strings to HTML/XML markup."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "matplotlib"
+version = "3.4.3"
+description = "Python plotting package"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+cycler = ">=0.10"
+kiwisolver = ">=1.0.1"
+numpy = ">=1.16"
+pillow = ">=6.2.0"
+pyparsing = ">=2.2.1"
+python-dateutil = ">=2.7"
+
+[[package]]
+name = "matplotlib-inline"
+version = "0.1.3"
+description = "Inline Matplotlib backend for Jupyter"
+category = "main"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+traitlets = "*"
+
+[[package]]
+name = "mistune"
+version = "0.8.4"
+description = "The fastest markdown parser in pure Python"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "nbclient"
+version = "0.5.4"
+description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
+category = "main"
+optional = false
+python-versions = ">=3.6.1"
+
+[package.dependencies]
+jupyter-client = ">=6.1.5"
+nbformat = ">=5.0"
+nest-asyncio = "*"
+traitlets = ">=4.2"
+
+[package.extras]
+dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"]
+sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"]
+test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"]
+
+[[package]]
+name = "nbconvert"
+version = "6.1.0"
+description = "Converting Jupyter Notebooks"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+bleach = "*"
+defusedxml = "*"
+entrypoints = ">=0.2.2"
+jinja2 = ">=2.4"
+jupyter-core = "*"
+jupyterlab-pygments = "*"
+mistune = ">=0.8.1,<2"
+nbclient = ">=0.5.0,<0.6.0"
+nbformat = ">=4.4"
+pandocfilters = ">=1.4.1"
+pygments = ">=2.4.1"
+testpath = "*"
+traitlets = ">=5.0"
+
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diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..c52aa98
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,20 @@
+[tool.poetry]
+name = "ioi"
+version = "0.1.0"
+description = "Analysis of the intelligence oversight index survey data"
+authors = ["linozen <linus@sehn.tech>"]
+license = "MIT"
+
+[tool.poetry.dependencies]
+python = "^3.9"
+streamlit = "^0.88.0"
+plotly = "^5.3.1"
+openpyxl = "^3.0.8"
+XlsxWriter = "^3.0.1"
+phik = "^0.12.0"
+
+[tool.poetry.dev-dependencies]
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"