setup.py

import setuptools
import versioneer


with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
    name="gctree",
    version=versioneer.get_version(),
    cmdclass=versioneer.get_cmdclass(),
    author="Matsen Group",
    author_email="ematsen@gmail.com",
    description="phylogenetic inference of genotype-collapsed trees",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/matsengrp/gctree",
    entry_points={"console_scripts": ["gctree=gctree.cli:main",
                                      "deduplicate=gctree.deduplicate:main",
                                      "mkconfig=gctree.mkconfig:main",
                                      "isotype=gctree.isotype:main",
                                      "phylip_parse=gctree.phylip_parse:main"]},
    packages=['gctree'],
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: GNU General Public License (GPL)",
        "Operating System :: OS Independent",
    ],
    python_requires=">=3.7",
    install_requires=[
        "PyQt5",
        "ete3",
        "biopython",
        "matplotlib",
        "pandas",
        "scipy",
        "seaborn",
        "multiset",
        "frozendict",
        "historydag>=1.2.0"
    ],
)