Add ID prefix listing to config files

[kevinschaper]

We need to document which prefixes we expect for each entity type generated. At a minimum, this should look like

entity_types:
    biolink:Gene
        id_prefix: 
            - 'MGI'
            - 'Xenbase'
            - 
    biolink:PhenotypicFeature
        id_prefix:
            - 'MP'
            - 'XPO'

Taking it a step further, we could replace the lists of node and edge properties and specifying all of the properties in this same structure. It's a little repetitive, but offers the chance for an extra layer of validation if a property is set in the python code that wasn't configured in the yaml.

entities:
    biolink:Gene:
        id_prefix: 
            - 'MGI'
            - 'Xenbase'
        properties:
            - 'id'
            - 'category'
            - 'provided_by'
    'biolink:PhenotypicFeature':
        id_prefix:
            - 'MP'
            - 'XPO'
        properties:
            - 'id'
            - 'category'
            - 'provided_by'    
    'biolink:GeneToPhenotypicFeatureAssociation':
        id_prefix:
            - 'uuid'
        properties:
            - 'id'
            - 'subject'
            - 'predicate'
            - 'object'
            - 'category'
            - 'relation'
            - 'qualifiers'
            - 'publications'
            - 'provided_by'   

[matentzn]

I think this looks great after a cursory glance! Thanks for considering it.

[kevinschaper]

This hasn't been touched or considered in a year, and I'm tempted to drop it off the bottom of the ingest, but at this point maybe it would be worth considering this from a QC POV.

we could have some nice QC for node.category + node.namespace and edge.subject_namespace + edge.category + edge.object_namespace

I don't know how to prioritize this work, but I think we would benefit from being able to fix the surprises that we find.

[monicacecilia]

Dear @amc-corey-cox, could I kindly ask if you could please assess the feasibility of including this in our QC suite?
Thank you!
🌷