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EXAMPLE_SAMPLE_LIST_TEXT_FILE.txt
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SAMPLE_ID,PIPELINE,GENOME_BUILD,FASTQ1,FASTQ2,FASTQ1_TUMOR,FASTQ2_TUMOR,CLEANUP LIB_ID,PL_ID,PU_ID
Sample1,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_10087.lane_8.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_10087.lane_8.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample2,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R126.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R126.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample3,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_10095.lane_8.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_10095.lane_8.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample4,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R127.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R127.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample5,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_40014.lane_8.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_40014.lane_8.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample6,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R128.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R128.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample7,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_40027.lane_8.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_40027.lane_8.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample8,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R129.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R129.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample9,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_4006.lane_8.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_4006.lane_8.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample10,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R130.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R130.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample11,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R124.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R124.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample12,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R140.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R140.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX
Sample13,gatk4_germline,HG1K37,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R125.lane_7.R1.fastq.gz,//media/DISK1/exome_aggregation/fastqs/wes_40.sample_R125.lane_7.R2.fastq.gz,,,,lib1,Illumina,XXX