ci.yml

name: Tox CI with Conda

on:
  push:
    branches:
      - main
      - dev
  pull_request:
    branches:
      - main

jobs:
  flake8:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v3

      - name: Install Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: "latest"
          python-version: 3.11
          auto-activate-base: false


      - name: Create and activate environment
        run: |
          conda create -n test-env python=3.11 flake8 -y
          conda init
          source ~/.bashrc
          conda activate test-env
          pip install tox tox-conda

      - name: Run Flake8
        run: |
          conda init
          source ~/.bashrc
          conda activate test-env
          tox -e flake8

  test:
    runs-on: ubuntu-latest

    strategy:
      matrix:
        python-version: [3.8,3.9,3.10.15,3.11,3.12,3.13]

    steps:
      - name: Checkout code
        uses: actions/checkout@v3

      - name: Install Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniconda-version: "latest"
          python-version: ${{ matrix.python-version }}
          auto-activate-base: false

      - name: Create and activate environment
        run: |
          conda create -n test-env python=${{ matrix.python-version }} -y
          conda init
          source ~/.bashrc
          conda activate test-env
          pip install tox tox-conda

      - name: Install GCC and GFortran
        run: |
          sudo apt-get update
          sudo apt-get install -y gcc gfortran

      - name: Install dependencies
        run: |
          sudo apt-get install -y bc ninja-build

      - name: Run Tox
        run: |
          conda init
          source ~/.bashrc
          conda activate test-env
          tox -e py$(echo ${{ matrix.python-version }} | tr -d . | cut -c 1-3)

      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: unittests

      - name: Upload test results to Codecov
        if: ${{ !cancelled() }}
        uses: codecov/test-results-action@v1
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: unittests