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Where can I find the complete raw connectome datasets used in the conn2res toolbox? #52

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jiedia opened this issue Jan 10, 2025 · 4 comments

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@jiedia
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jiedia commented Jan 10, 2025

Dear conn2res team,

I have been working with the conn2res toolbox and noticed that the datasets provided are pre-processed versions. I am specifically interested in obtaining the complete raw connectome datasets that were used as the basis for these pre-processed datasets.

Could you please provide information on where I can access the original, unprocessed connectome data? It would be incredibly helpful to have access to the full raw datasets for my research.

Thank you for your help and I look forward to your response!

Best regards,
Peter

@jiedia
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jiedia commented Jan 10, 2025

Additionally, I’m mainly looking for the complete raw connectome datasets for mice or rats, as this is the focus of my project. Any links or resources would be really helpful!

@kaurao
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kaurao commented Jan 10, 2025

I am running into error for similar reason when trying to run the tutorial:
FileNotFoundError: [Errno 2] No such file or directory: '[PATH_TO]/envs/conn2res/lib/python3.8/site-packages/examples/data/human/connectivity.npy'

this originates at the following line:
conn = Conn(subj_id=0)

I can send the full stack if needed.

Thanks!

@jiedia
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jiedia commented Jan 13, 2025

I am running into error for similar reason when trying to run the tutorial: FileNotFoundError: [Errno 2] No such file or directory: '[PATH_TO]/envs/conn2res/lib/python3.8/site-packages/examples/data/human/connectivity.npy'

this originates at the following line: conn = Conn(subj_id=0)

I can send the full stack if needed.

Thanks!

Thank you for your response. I greatly appreciate your time and assistance.

I am specifically looking for the complete raw connectome datasets for mice, as this is the primary focus of my project. If it is possible for your team to provide access to these datasets, it would be immensely helpful for my research. Alternatively, if you could point me to resources or links where I might obtain the raw connectome data for mice, I would be very grateful.

Thank you again for your help, and I look forward to your response!

Best regards,
Peter

@kaurao
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kaurao commented Jan 13, 2025

Found the connectomes here: https://zenodo.org/records/10205004
This is linked in the tutorial.

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