diff --git a/R/use_workflow.R b/R/use_workflow.R index 6f9a4cd8..70c26e53 100644 --- a/R/use_workflow.R +++ b/R/use_workflow.R @@ -44,8 +44,8 @@ #' @param has_latex Install a suite of LaTeX dependencies used for #' rendering Sweave (.rnw) and other documentation files. #' @param github_token Token for the repo. -#' Can be passed in using {{ secrets.PAT_GITHUB }}. -#' By default, it uses {{ secrets.GITHUB_TOKEN }} +#' Can be passed in using \{\{ secrets.PAT_GITHUB \}\}. +#' By default, it uses \{\{ secrets.GITHUB_TOKEN \}\} #' which is automatically set up. Read #' \href{https://docs.github.com/en/actions/security-guides/automatic-token-authentication}{ #' here for more details}. diff --git a/README.md b/README.md index fd6b9f62..ebe0b8b8 100644 --- a/README.md +++ b/README.md @@ -267,7 +267,7 @@ utils::sessionInfo() ## [4] utf8_1.2.3 BiocFileCache_2.6.1 R6_2.5.1 ## [7] stats4_4.2.1 RSQLite_2.3.1 evaluate_0.21 ## [10] httr_1.4.6 ggplot2_3.4.2 pillar_1.9.0 - ## [13] yulab.utils_0.0.6 rworkflows_0.99.12 biocViews_1.66.3 + ## [13] yulab.utils_0.0.6 rworkflows_0.99.13 biocViews_1.66.3 ## [16] rlang_1.1.1 curl_5.0.0 data.table_1.14.8 ## [19] rstudioapi_0.14 whisker_0.4.1 blob_1.2.4 ## [22] DT_0.28 RUnit_0.4.32 rmarkdown_2.22 diff --git a/man/use_workflow.Rd b/man/use_workflow.Rd index 42df268d..89f32082 100644 --- a/man/use_workflow.Rd +++ b/man/use_workflow.Rd @@ -98,8 +98,8 @@ rendering Sweave (.rnw) and other documentation files.} \item{run_docker}{Whether to build and push a Docker container to DockerHub.} \item{github_token}{Token for the repo. -Can be passed in using {{ secrets.PAT_GITHUB }}. -By default, it uses {{ secrets.GITHUB_TOKEN }} +Can be passed in using \{\{ secrets.PAT_GITHUB \}\}. +By default, it uses \{\{ secrets.GITHUB_TOKEN \}\} which is automatically set up. Read \href{https://docs.github.com/en/actions/security-guides/automatic-token-authentication}{ here for more details}.}