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Is your feature request related to a problem? Please describe
Currently, there is no automated way to go back to the sequence creating the hash for each k-mer. There is code to do this, like here but it is not yet integrated into kmermaid. Since there are often questions about what k-mers contribute to the cell type, having the underlying sequence and read associated with each k-mer would be very useful.
Describe the solution you'd like
Add hash2kmer as a process, performing it on each cell's signatures individually. For bam input, keep aligned and unaligned separate.
Describe alternatives you've considered
The way I do this right now is in a hacky Jupyter notebook.
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe
Currently, there is no automated way to go back to the sequence creating the hash for each k-mer. There is code to do this, like here but it is not yet integrated into
kmermaid
. Since there are often questions about what k-mers contribute to the cell type, having the underlying sequence and read associated with each k-mer would be very useful.Describe the solution you'd like
Add
hash2kmer
as a process, performing it on each cell's signatures individually. Forbam
input, keep aligned and unaligned separate.Describe alternatives you've considered
The way I do this right now is in a hacky Jupyter notebook.
The text was updated successfully, but these errors were encountered: