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[Typo/Bug] Abbreviations listed as related synonyms #2933

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noamrotenberg opened this issue Feb 5, 2025 · 1 comment
Open

[Typo/Bug] Abbreviations listed as related synonyms #2933

noamrotenberg opened this issue Feb 5, 2025 · 1 comment

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@noamrotenberg
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Description of typo, bug or error
In CL, it seems that all abbreviation matches are listed as related synonyms rather than exact synonyms. I think that an abbreviation is an exact match to its expanded form.

CL term examples

  • "RAS cell" for "respiratory airway secretory cell" (CL:4052031)
  • "PNEC" for "pulmonary neuroendocrine cell" (CL:1000223)

Other ontologies (examples)
Other ontologies seem to list abbreviations as exact matches.
E.g.,

@dosumis
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dosumis commented Feb 10, 2025

Yeh - I was outvoted on this policy a couple of years ago.

I think it comes down to arguments around the meaning and use of the synonym fields. Acronyms/abbreviations are often used as exact synonyms in specific contexts/papers (which we can reference). But, being short, they often have very different meanings in other contexts. I think it is valuable to be able to capture the former sense, but currently we do not.

Note - All abbreviations should also have an abbreviation tag.

I think it is always important to discuss these issues in the context of use-cases. I'd be happy to re-open for discussion in the light of current use-cases & technical developments (e.g. in LLMs).

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