mkdocs.yml

site_name: <i>C. elegans</i> Connectome Toolbox
theme:
  name: material
  favicon: images/favicon.ico
  logo: images/favicon.ico
  palette:
    primary: green
  features:
    - content.tabs.link   
  icon:
    admonition:
      example: material/database
      tip: material/set-left
      abstract: material/graph
      question: material/information-slab-circle-outline
      warning: material/web

plugins:
  - plotly
  - search
  - mkdocs-autoapi:
      autoapi_dir: "cect"
      autoapi_root: "api/"
      autoapi_keep_files: true
      autoapi_add_nav_entry: false
  - mkdocstrings:

extra_css:
  - stylesheets/extra.css

markdown_extensions:
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  - admonition
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          format: !!python/name:mkdocs_plotly_plugin.fences.fence_plotly
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        kwds:
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  - pymdownx.emoji:
      emoji_index: !!python/name:material.extensions.emoji.twemoji
      emoji_generator: !!python/name:material.extensions.emoji.to_svg

nav:
  - Overview: 'index.md'
  - Comparison: 'Comparison.md'
  - 'Key publications':
    - 'Albertson & Thomson 1976': 'Albertson_1976.md'
    - '<b>White et al. 1986</b>': 'White_1986.md'
    - 'Durbin 1987': 'Durbin_1987.md'
    - 'Hall & Russell 1991': 'Hall_1991.md'
    - 'Altun et al. 2009': 'Altun_2009.md'
    - '<b>Varshney et al. 2011</b>': 'Varshney_2011.md'
    - 'Jarrell et al. 2012': 'Jarrell_2012.md'
    - 'Serrano-Saiz et al. 2013': 'Serrano_2013.md'
    - 'Pereira et al. 2015': 'Pereira_2015.md'
    - 'Gendrel, Atlas & Hobert 2016': 'Gendrel_2016.md'
    - '<b>Bentley et al. 2016</b>': 'Bentley_2016.md'
    - '<b>Cook et al. 2019</b>': 'Cook_2019.md'
    - '<b>Cook et al. 2020</b>': 'Cook_2020.md'
    - 'Fenyves et al. 2020': 'Fenyves_2020.md'
    - '<b>Brittin et al. 2021</b>': 'Brittin_2021.md'
    - 'Taylor et al. 2021': 'Taylor_2021.md'
    - 'Yemini et al. 2021': 'Yemini_2021.md'
    - '<b>Witvliet et al. 2021</b>': 'Witvliet_2021.md'
    - 'Beets et al. 2023': 'Beets_2023.md'
    - 'Dag et al. 2023': 'Dag_2023.md'
    - 'Atanas et al. 2023': 'Atanas_2023.md'
    - '<b>Randi et al. 2023</b>': 'Randi_2023.md'
    - '<b>Ripoll-Sánchez et al. 2023</b>': 'RipollSanchez_2023.md'
  
  - 'Data sets':
    - 'White et al. 1986 - A (N2U)': 'White_A_data_graph.md'
    - 'White et al. 1986 - L4 (JSH)': 'White_L4_data_graph.md'
    - 'White et al. 1986 - whole': 'White_whole_data_graph.md'
    - 'Varshney et al. 2011': 'Varshney_data_graph.md'
    - 'Bentley et al. 2016 Monoam.': 'Bentley2016_MA_data_graph.md'
    - 'Bentley et al. 2016 Peptid.': 'Bentley2016_PEP_data_graph.md'
    - 'Cook et al. 2019 Herm': 'Cook2019Herm_data_graph.md'
    - 'Cook et al. 2019 Male': 'Cook2019Male_data_graph.md'
    - 'Cook et al. 2020': 'Cook2020_data_graph.md'
    - 'Brittin et al. 2021': 'Brittin2021_data_graph.md'
    - 'Witvliet et al. 2021 1 (L1)': 'Witvliet1_data_graph.md'
    - 'Witvliet et al. 2021 2 (L1)': 'Witvliet2_data_graph.md'
    - 'Witvliet et al. 2021 3 (L1)': 'Witvliet3_data_graph.md'
    - 'Witvliet et al. 2021 4 (L1)': 'Witvliet4_data_graph.md'
    - 'Witvliet et al. 2021 5 (L2)': 'Witvliet5_data_graph.md'
    - 'Witvliet et al. 2021 6 (L3)': 'Witvliet6_data_graph.md'
    - 'Witvliet et al. 2021 7 (adult)': 'Witvliet7_data_graph.md'
    - 'Witvliet et al. 2021 8 (adult)': 'Witvliet8_data_graph.md'
    - 'WormNeuroAtlas Anatomy': 'WormNeuroAtlas_data_graph.md'
    - 'Randi et al. 2023': 'Randi2023_data_graph.md'
    - 'Ripoll-Sánchez 2023 (short)': 'RipollSanchezShortRange_data.md'
    - 'Ripoll-Sánchez 2023 (mid)': 'RipollSanchezMidRange_data.md'
    - 'Ripoll-Sánchez 2023 (long)': 'RipollSanchezLongRange_data.md'
    - 'Test': 'Test_data_graph.md'
  - Cells:
    - 'All <i>C. elegans</i> cells': 'Cells.md'    
    - 'Individual neurons': 
      - 'ADAL': 'ADAL.md'
      - 'ADAR': 'ADAR.md'
      - 'ADEL': 'ADEL.md'
      - 'ADER': 'ADER.md'
      - 'ADFL': 'ADFL.md'
      - 'ADFR': 'ADFR.md'
      - 'ADLL': 'ADLL.md'
      - 'ADLR': 'ADLR.md'
      - 'AFDL': 'AFDL.md'
      - 'AFDR': 'AFDR.md'
      - 'AIAL': 'AIAL.md'
      - 'AIAR': 'AIAR.md'
      - 'AIBL': 'AIBL.md'
      - 'AIBR': 'AIBR.md'
      - 'AIML': 'AIML.md'
      - 'AIMR': 'AIMR.md'
      - 'AINL': 'AINL.md'
      - 'AINR': 'AINR.md'
      - 'AIYL': 'AIYL.md'
      - 'AIYR': 'AIYR.md'
      - 'AIZL': 'AIZL.md'
      - 'AIZR': 'AIZR.md'
      - 'ALA': 'ALA.md'
      - 'ALML': 'ALML.md'
      - 'ALMR': 'ALMR.md'
      - 'ALNL': 'ALNL.md'
      - 'ALNR': 'ALNR.md'
      - 'AQR': 'AQR.md'
      - 'AS1': 'AS1.md'
      - 'AS10': 'AS10.md'
      - 'AS11': 'AS11.md'
      - 'AS2': 'AS2.md'
      - 'AS3': 'AS3.md'
      - 'AS4': 'AS4.md'
      - 'AS5': 'AS5.md'
      - 'AS6': 'AS6.md'
      - 'AS7': 'AS7.md'
      - 'AS8': 'AS8.md'
      - 'AS9': 'AS9.md'
      - 'ASEL': 'ASEL.md'
      - 'ASER': 'ASER.md'
      - 'ASGL': 'ASGL.md'
      - 'ASGR': 'ASGR.md'
      - 'ASHL': 'ASHL.md'
      - 'ASHR': 'ASHR.md'
      - 'ASIL': 'ASIL.md'
      - 'ASIR': 'ASIR.md'
      - 'ASJL': 'ASJL.md'
      - 'ASJR': 'ASJR.md'
      - 'ASKL': 'ASKL.md'
      - 'ASKR': 'ASKR.md'
      - 'AUAL': 'AUAL.md'
      - 'AUAR': 'AUAR.md'
      - 'AVAL': 'AVAL.md'
      - 'AVAR': 'AVAR.md'
      - 'AVBL': 'AVBL.md'
      - 'AVBR': 'AVBR.md'
      - 'AVDL': 'AVDL.md'
      - 'AVDR': 'AVDR.md'
      - 'AVEL': 'AVEL.md'
      - 'AVER': 'AVER.md'
      - 'AVFL': 'AVFL.md'
      - 'AVFR': 'AVFR.md'
      - 'AVG': 'AVG.md'
      - 'AVHL': 'AVHL.md'
      - 'AVHR': 'AVHR.md'
      - 'AVJL': 'AVJL.md'
      - 'AVJR': 'AVJR.md'
      - 'AVKL': 'AVKL.md'
      - 'AVKR': 'AVKR.md'
      - 'AVL': 'AVL.md'
      - 'AVM': 'AVM.md'
      - 'AWAL': 'AWAL.md'
      - 'AWAR': 'AWAR.md'
      - 'AWBL': 'AWBL.md'
      - 'AWBR': 'AWBR.md'
      - 'AWCL': 'AWCL.md'
      - 'AWCR': 'AWCR.md'
      - 'BAGL': 'BAGL.md'
      - 'BAGR': 'BAGR.md'
      - 'BDUL': 'BDUL.md'
      - 'BDUR': 'BDUR.md'
      - 'CA01': 'CA01.md'
      - 'CA02': 'CA02.md'
      - 'CA03': 'CA03.md'
      - 'CA04': 'CA04.md'
      - 'CA05': 'CA05.md'
      - 'CA06': 'CA06.md'
      - 'CA07': 'CA07.md'
      - 'CA08': 'CA08.md'
      - 'CA09': 'CA09.md'
      - 'CANL': 'CANL.md'
      - 'CANR': 'CANR.md'
      - 'CEMDL': 'CEMDL.md'
      - 'CEMDR': 'CEMDR.md'
      - 'CEMVL': 'CEMVL.md'
      - 'CEMVR': 'CEMVR.md'
      - 'CEPDL': 'CEPDL.md'
      - 'CEPDR': 'CEPDR.md'
      - 'CEPVL': 'CEPVL.md'
      - 'CEPVR': 'CEPVR.md'
      - 'CP01': 'CP01.md'
      - 'CP02': 'CP02.md'
      - 'CP03': 'CP03.md'
      - 'CP04': 'CP04.md'
      - 'CP05': 'CP05.md'
      - 'CP06': 'CP06.md'
      - 'CP07': 'CP07.md'
      - 'CP08': 'CP08.md'
      - 'CP09': 'CP09.md'
      - 'DA1': 'DA1.md'
      - 'DA2': 'DA2.md'
      - 'DA3': 'DA3.md'
      - 'DA4': 'DA4.md'
      - 'DA5': 'DA5.md'
      - 'DA6': 'DA6.md'
      - 'DA7': 'DA7.md'
      - 'DA8': 'DA8.md'
      - 'DA9': 'DA9.md'
      - 'DB1': 'DB1.md'
      - 'DB2': 'DB2.md'
      - 'DB3': 'DB3.md'
      - 'DB4': 'DB4.md'
      - 'DB5': 'DB5.md'
      - 'DB6': 'DB6.md'
      - 'DB7': 'DB7.md'
      - 'DD1': 'DD1.md'
      - 'DD2': 'DD2.md'
      - 'DD3': 'DD3.md'
      - 'DD4': 'DD4.md'
      - 'DD5': 'DD5.md'
      - 'DD6': 'DD6.md'
      - 'DVA': 'DVA.md'
      - 'DVB': 'DVB.md'
      - 'DVC': 'DVC.md'
      - 'DVE': 'DVE.md'
      - 'DVF': 'DVF.md'
      - 'DX1': 'DX1.md'
      - 'DX2': 'DX2.md'
      - 'DX3': 'DX3.md'
      - 'EF1': 'EF1.md'
      - 'EF2': 'EF2.md'
      - 'EF3': 'EF3.md'
      - 'FLPL': 'FLPL.md'
      - 'FLPR': 'FLPR.md'
      - 'HOA': 'HOA.md'
      - 'HOB': 'HOB.md'
      - 'HSNL': 'HSNL.md'
      - 'HSNR': 'HSNR.md'
      - 'I1L': 'I1L.md'
      - 'I1R': 'I1R.md'
      - 'I2L': 'I2L.md'
      - 'I2R': 'I2R.md'
      - 'I3': 'I3.md'
      - 'I4': 'I4.md'
      - 'I5': 'I5.md'
      - 'I6': 'I6.md'
      - 'IL1DL': 'IL1DL.md'
      - 'IL1DR': 'IL1DR.md'
      - 'IL1L': 'IL1L.md'
      - 'IL1R': 'IL1R.md'
      - 'IL1VL': 'IL1VL.md'
      - 'IL1VR': 'IL1VR.md'
      - 'IL2DL': 'IL2DL.md'
      - 'IL2DR': 'IL2DR.md'
      - 'IL2L': 'IL2L.md'
      - 'IL2R': 'IL2R.md'
      - 'IL2VL': 'IL2VL.md'
      - 'IL2VR': 'IL2VR.md'
      - 'LUAL': 'LUAL.md'
      - 'LUAR': 'LUAR.md'
      - 'M1': 'M1.md'
      - 'M2L': 'M2L.md'
      - 'M2R': 'M2R.md'
      - 'M3L': 'M3L.md'
      - 'M3R': 'M3R.md'
      - 'M4': 'M4.md'
      - 'M5': 'M5.md'
      - 'MCL': 'MCL.md'
      - 'MCML': 'MCML.md'
      - 'MCMR': 'MCMR.md'
      - 'MCR': 'MCR.md'
      - 'MI': 'MI.md'
      - 'NSML': 'NSML.md'
      - 'NSMR': 'NSMR.md'
      - 'OLLL': 'OLLL.md'
      - 'OLLR': 'OLLR.md'
      - 'OLQDL': 'OLQDL.md'
      - 'OLQDR': 'OLQDR.md'
      - 'OLQVL': 'OLQVL.md'
      - 'OLQVR': 'OLQVR.md'
      - 'PCAL': 'PCAL.md'
      - 'PCAR': 'PCAR.md'
      - 'PCBL': 'PCBL.md'
      - 'PCBR': 'PCBR.md'
      - 'PCCL': 'PCCL.md'
      - 'PCCR': 'PCCR.md'
      - 'PDA': 'PDA.md'
      - 'PDB': 'PDB.md'
      - 'PDC': 'PDC.md'
      - 'PDEL': 'PDEL.md'
      - 'PDER': 'PDER.md'
      - 'PGA': 'PGA.md'
      - 'PHAL': 'PHAL.md'
      - 'PHAR': 'PHAR.md'
      - 'PHBL': 'PHBL.md'
      - 'PHBR': 'PHBR.md'
      - 'PHCL': 'PHCL.md'
      - 'PHCR': 'PHCR.md'
      - 'PHDL': 'PHDL.md'
      - 'PHDR': 'PHDR.md'
      - 'PLML': 'PLML.md'
      - 'PLMR': 'PLMR.md'
      - 'PLNL': 'PLNL.md'
      - 'PLNR': 'PLNR.md'
      - 'PQR': 'PQR.md'
      - 'PVCL': 'PVCL.md'
      - 'PVCR': 'PVCR.md'
      - 'PVDL': 'PVDL.md'
      - 'PVDR': 'PVDR.md'
      - 'PVM': 'PVM.md'
      - 'PVNL': 'PVNL.md'
      - 'PVNR': 'PVNR.md'
      - 'PVPL': 'PVPL.md'
      - 'PVPR': 'PVPR.md'
      - 'PVQL': 'PVQL.md'
      - 'PVQR': 'PVQR.md'
      - 'PVR': 'PVR.md'
      - 'PVT': 'PVT.md'
      - 'PVV': 'PVV.md'
      - 'PVWL': 'PVWL.md'
      - 'PVWR': 'PVWR.md'
      - 'PVX': 'PVX.md'
      - 'PVY': 'PVY.md'
      - 'PVZ': 'PVZ.md'
      - 'R1AL': 'R1AL.md'
      - 'R1AR': 'R1AR.md'
      - 'R1BL': 'R1BL.md'
      - 'R1BR': 'R1BR.md'
      - 'R2AL': 'R2AL.md'
      - 'R2AR': 'R2AR.md'
      - 'R2BL': 'R2BL.md'
      - 'R2BR': 'R2BR.md'
      - 'R3AL': 'R3AL.md'
      - 'R3AR': 'R3AR.md'
      - 'R3BL': 'R3BL.md'
      - 'R3BR': 'R3BR.md'
      - 'R4AL': 'R4AL.md'
      - 'R4AR': 'R4AR.md'
      - 'R4BL': 'R4BL.md'
      - 'R4BR': 'R4BR.md'
      - 'R5AL': 'R5AL.md'
      - 'R5AR': 'R5AR.md'
      - 'R5BL': 'R5BL.md'
      - 'R5BR': 'R5BR.md'
      - 'R6AL': 'R6AL.md'
      - 'R6AR': 'R6AR.md'
      - 'R6BL': 'R6BL.md'
      - 'R6BR': 'R6BR.md'
      - 'R7AL': 'R7AL.md'
      - 'R7AR': 'R7AR.md'
      - 'R7BL': 'R7BL.md'
      - 'R7BR': 'R7BR.md'
      - 'R8AL': 'R8AL.md'
      - 'R8AR': 'R8AR.md'
      - 'R8BL': 'R8BL.md'
      - 'R8BR': 'R8BR.md'
      - 'R9AL': 'R9AL.md'
      - 'R9AR': 'R9AR.md'
      - 'R9BL': 'R9BL.md'
      - 'R9BR': 'R9BR.md'
      - 'RIAL': 'RIAL.md'
      - 'RIAR': 'RIAR.md'
      - 'RIBL': 'RIBL.md'
      - 'RIBR': 'RIBR.md'
      - 'RICL': 'RICL.md'
      - 'RICR': 'RICR.md'
      - 'RID': 'RID.md'
      - 'RIFL': 'RIFL.md'
      - 'RIFR': 'RIFR.md'
      - 'RIGL': 'RIGL.md'
      - 'RIGR': 'RIGR.md'
      - 'RIH': 'RIH.md'
      - 'RIML': 'RIML.md'
      - 'RIMR': 'RIMR.md'
      - 'RIPL': 'RIPL.md'
      - 'RIPR': 'RIPR.md'
      - 'RIR': 'RIR.md'
      - 'RIS': 'RIS.md'
      - 'RIVL': 'RIVL.md'
      - 'RIVR': 'RIVR.md'
      - 'RMDDL': 'RMDDL.md'
      - 'RMDDR': 'RMDDR.md'
      - 'RMDL': 'RMDL.md'
      - 'RMDR': 'RMDR.md'
      - 'RMDVL': 'RMDVL.md'
      - 'RMDVR': 'RMDVR.md'
      - 'RMED': 'RMED.md'
      - 'RMEL': 'RMEL.md'
      - 'RMER': 'RMER.md'
      - 'RMEV': 'RMEV.md'
      - 'RMFL': 'RMFL.md'
      - 'RMFR': 'RMFR.md'
      - 'RMGL': 'RMGL.md'
      - 'RMGR': 'RMGR.md'
      - 'RMHL': 'RMHL.md'
      - 'RMHR': 'RMHR.md'
      - 'SAADL': 'SAADL.md'
      - 'SAADR': 'SAADR.md'
      - 'SAAVL': 'SAAVL.md'
      - 'SAAVR': 'SAAVR.md'
      - 'SABD': 'SABD.md'
      - 'SABVL': 'SABVL.md'
      - 'SABVR': 'SABVR.md'
      - 'SDQL': 'SDQL.md'
      - 'SDQR': 'SDQR.md'
      - 'SIADL': 'SIADL.md'
      - 'SIADR': 'SIADR.md'
      - 'SIAVL': 'SIAVL.md'
      - 'SIAVR': 'SIAVR.md'
      - 'SIBDL': 'SIBDL.md'
      - 'SIBDR': 'SIBDR.md'
      - 'SIBVL': 'SIBVL.md'
      - 'SIBVR': 'SIBVR.md'
      - 'SMBDL': 'SMBDL.md'
      - 'SMBDR': 'SMBDR.md'
      - 'SMBVL': 'SMBVL.md'
      - 'SMBVR': 'SMBVR.md'
      - 'SMDDL': 'SMDDL.md'
      - 'SMDDR': 'SMDDR.md'
      - 'SMDVL': 'SMDVL.md'
      - 'SMDVR': 'SMDVR.md'
      - 'SPCL': 'SPCL.md'
      - 'SPCR': 'SPCR.md'
      - 'SPDL': 'SPDL.md'
      - 'SPDR': 'SPDR.md'
      - 'SPVL': 'SPVL.md'
      - 'SPVR': 'SPVR.md'
      - 'URADL': 'URADL.md'
      - 'URADR': 'URADR.md'
      - 'URAVL': 'URAVL.md'
      - 'URAVR': 'URAVR.md'
      - 'URBL': 'URBL.md'
      - 'URBR': 'URBR.md'
      - 'URXL': 'URXL.md'
      - 'URXR': 'URXR.md'
      - 'URYDL': 'URYDL.md'
      - 'URYDR': 'URYDR.md'
      - 'URYVL': 'URYVL.md'
      - 'URYVR': 'URYVR.md'
      - 'VA1': 'VA1.md'
      - 'VA10': 'VA10.md'
      - 'VA11': 'VA11.md'
      - 'VA12': 'VA12.md'
      - 'VA2': 'VA2.md'
      - 'VA3': 'VA3.md'
      - 'VA4': 'VA4.md'
      - 'VA5': 'VA5.md'
      - 'VA6': 'VA6.md'
      - 'VA7': 'VA7.md'
      - 'VA8': 'VA8.md'
      - 'VA9': 'VA9.md'
      - 'VB1': 'VB1.md'
      - 'VB10': 'VB10.md'
      - 'VB11': 'VB11.md'
      - 'VB2': 'VB2.md'
      - 'VB3': 'VB3.md'
      - 'VB4': 'VB4.md'
      - 'VB5': 'VB5.md'
      - 'VB6': 'VB6.md'
      - 'VB7': 'VB7.md'
      - 'VB8': 'VB8.md'
      - 'VB9': 'VB9.md'
      - 'VC1': 'VC1.md'
      - 'VC2': 'VC2.md'
      - 'VC3': 'VC3.md'
      - 'VC4': 'VC4.md'
      - 'VC5': 'VC5.md'
      - 'VC6': 'VC6.md'
      - 'VD1': 'VD1.md'
      - 'VD10': 'VD10.md'
      - 'VD11': 'VD11.md'
      - 'VD12': 'VD12.md'
      - 'VD13': 'VD13.md'
      - 'VD2': 'VD2.md'
      - 'VD3': 'VD3.md'
      - 'VD4': 'VD4.md'
      - 'VD5': 'VD5.md'
      - 'VD6': 'VD6.md'
      - 'VD7': 'VD7.md'
      - 'VD8': 'VD8.md'
      - 'VD9': 'VD9.md'
    - 'Individual muscles': 
      - 'ailL': 'ailL.md'
      - 'ailR': 'ailR.md'
      - 'aobL': 'aobL.md'
      - 'aobR': 'aobR.md'
      - 'BWM': 'BWM.md'
      - 'cdlL': 'cdlL.md'
      - 'cdlR': 'cdlR.md'
      - 'dglL1': 'dglL1.md'
      - 'dglL2': 'dglL2.md'
      - 'dglL3': 'dglL3.md'
      - 'dglL4': 'dglL4.md'
      - 'dglL5': 'dglL5.md'
      - 'dglL6': 'dglL6.md'
      - 'dglL7': 'dglL7.md'
      - 'dglR1': 'dglR1.md'
      - 'dglR2': 'dglR2.md'
      - 'dglR3': 'dglR3.md'
      - 'dglR4': 'dglR4.md'
      - 'dglR5': 'dglR5.md'
      - 'dglR6': 'dglR6.md'
      - 'dglR7': 'dglR7.md'
      - 'dglR8': 'dglR8.md'
      - 'dspL': 'dspL.md'
      - 'dspR': 'dspR.md'
      - 'dsrL': 'dsrL.md'
      - 'dsrR': 'dsrR.md'
      - 'gecL': 'gecL.md'
      - 'gecR': 'gecR.md'
      - 'grtL': 'grtL.md'
      - 'grtR': 'grtR.md'
      - 'MANAL': 'MANAL.md'
      - 'MDL01': 'MDL01.md'
      - 'MDL02': 'MDL02.md'
      - 'MDL03': 'MDL03.md'
      - 'MDL04': 'MDL04.md'
      - 'MDL05': 'MDL05.md'
      - 'MDL06': 'MDL06.md'
      - 'MDL07': 'MDL07.md'
      - 'MDL08': 'MDL08.md'
      - 'MDL09': 'MDL09.md'
      - 'MDL10': 'MDL10.md'
      - 'MDL11': 'MDL11.md'
      - 'MDL12': 'MDL12.md'
      - 'MDL13': 'MDL13.md'
      - 'MDL14': 'MDL14.md'
      - 'MDL15': 'MDL15.md'
      - 'MDL16': 'MDL16.md'
      - 'MDL17': 'MDL17.md'
      - 'MDL18': 'MDL18.md'
      - 'MDL19': 'MDL19.md'
      - 'MDL20': 'MDL20.md'
      - 'MDL21': 'MDL21.md'
      - 'MDL22': 'MDL22.md'
      - 'MDL23': 'MDL23.md'
      - 'MDL24': 'MDL24.md'
      - 'MDR01': 'MDR01.md'
      - 'MDR02': 'MDR02.md'
      - 'MDR03': 'MDR03.md'
      - 'MDR04': 'MDR04.md'
      - 'MDR05': 'MDR05.md'
      - 'MDR06': 'MDR06.md'
      - 'MDR07': 'MDR07.md'
      - 'MDR08': 'MDR08.md'
      - 'MDR09': 'MDR09.md'
      - 'MDR10': 'MDR10.md'
      - 'MDR11': 'MDR11.md'
      - 'MDR12': 'MDR12.md'
      - 'MDR13': 'MDR13.md'
      - 'MDR14': 'MDR14.md'
      - 'MDR15': 'MDR15.md'
      - 'MDR16': 'MDR16.md'
      - 'MDR17': 'MDR17.md'
      - 'MDR18': 'MDR18.md'
      - 'MDR19': 'MDR19.md'
      - 'MDR20': 'MDR20.md'
      - 'MDR21': 'MDR21.md'
      - 'MDR22': 'MDR22.md'
      - 'MDR23': 'MDR23.md'
      - 'MDR24': 'MDR24.md'
      - 'mu_anal': 'mu_anal.md'
      - 'mu_intL': 'mu_intL.md'
      - 'mu_intR': 'mu_intR.md'
      - 'mu_sph': 'mu_sph.md'
      - 'MVL01': 'MVL01.md'
      - 'MVL02': 'MVL02.md'
      - 'MVL03': 'MVL03.md'
      - 'MVL04': 'MVL04.md'
      - 'MVL05': 'MVL05.md'
      - 'MVL06': 'MVL06.md'
      - 'MVL07': 'MVL07.md'
      - 'MVL08': 'MVL08.md'
      - 'MVL09': 'MVL09.md'
      - 'MVL10': 'MVL10.md'
      - 'MVL11': 'MVL11.md'
      - 'MVL12': 'MVL12.md'
      - 'MVL13': 'MVL13.md'
      - 'MVL14': 'MVL14.md'
      - 'MVL15': 'MVL15.md'
      - 'MVL16': 'MVL16.md'
      - 'MVL17': 'MVL17.md'
      - 'MVL18': 'MVL18.md'
      - 'MVL19': 'MVL19.md'
      - 'MVL20': 'MVL20.md'
      - 'MVL21': 'MVL21.md'
      - 'MVL22': 'MVL22.md'
      - 'MVL23': 'MVL23.md'
      - 'MVR01': 'MVR01.md'
      - 'MVR02': 'MVR02.md'
      - 'MVR03': 'MVR03.md'
      - 'MVR04': 'MVR04.md'
      - 'MVR05': 'MVR05.md'
      - 'MVR06': 'MVR06.md'
      - 'MVR07': 'MVR07.md'
      - 'MVR08': 'MVR08.md'
      - 'MVR09': 'MVR09.md'
      - 'MVR10': 'MVR10.md'
      - 'MVR11': 'MVR11.md'
      - 'MVR12': 'MVR12.md'
      - 'MVR13': 'MVR13.md'
      - 'MVR14': 'MVR14.md'
      - 'MVR15': 'MVR15.md'
      - 'MVR16': 'MVR16.md'
      - 'MVR17': 'MVR17.md'
      - 'MVR18': 'MVR18.md'
      - 'MVR19': 'MVR19.md'
      - 'MVR20': 'MVR20.md'
      - 'MVR21': 'MVR21.md'
      - 'MVR22': 'MVR22.md'
      - 'MVR23': 'MVR23.md'
      - 'MVR24': 'MVR24.md'
      - 'MVULVA': 'MVULVA.md'
      - 'pilL': 'pilL.md'
      - 'pilR': 'pilR.md'
      - 'pm1': 'pm1.md'
      - 'pm2D': 'pm2D.md'
      - 'pm2VL': 'pm2VL.md'
      - 'pm2VR': 'pm2VR.md'
      - 'pm3D': 'pm3D.md'
      - 'pm3VL': 'pm3VL.md'
      - 'pm3VR': 'pm3VR.md'
      - 'pm4D': 'pm4D.md'
      - 'pm4VL': 'pm4VL.md'
      - 'pm4VR': 'pm4VR.md'
      - 'pm4_UNSPECIFIED': 'pm4_UNSPECIFIED.md'
      - 'pm5D': 'pm5D.md'
      - 'pm5VL': 'pm5VL.md'
      - 'pm5VR': 'pm5VR.md'
      - 'pm6D': 'pm6D.md'
      - 'pm6VL': 'pm6VL.md'
      - 'pm6VR': 'pm6VR.md'
      - 'pm7D': 'pm7D.md'
      - 'pm7VL': 'pm7VL.md'
      - 'pm7VR': 'pm7VR.md'
      - 'pm8': 'pm8.md'
      - 'pobL': 'pobL.md'
      - 'pobR': 'pobR.md'
      - 'polL': 'polL.md'
      - 'polR': 'polR.md'
      - 'um1AL': 'um1AL.md'
      - 'um1AR': 'um1AR.md'
      - 'um1PL': 'um1PL.md'
      - 'um1PR': 'um1PR.md'
      - 'um2AL': 'um2AL.md'
      - 'um2AR': 'um2AR.md'
      - 'um2PL': 'um2PL.md'
      - 'um2PR': 'um2PR.md'
      - 'vm1AL': 'vm1AL.md'
      - 'vm1AR': 'vm1AR.md'
      - 'vm1PL': 'vm1PL.md'
      - 'vm1PR': 'vm1PR.md'
      - 'vm2AL': 'vm2AL.md'
      - 'vm2AR': 'vm2AR.md'
      - 'vm2PL': 'vm2PL.md'
      - 'vm2PR': 'vm2PR.md'
      - 'vspL': 'vspL.md'
      - 'vspR': 'vspR.md'
      - 'vsrL': 'vsrL.md'
      - 'vsrR': 'vsrR.md'
    - 'Other cells': 
      - 'bm': 'bm.md'
      - 'CEPshDL': 'CEPshDL.md'
      - 'CEPshDR': 'CEPshDR.md'
      - 'CEPshVL': 'CEPshVL.md'
      - 'CEPshVR': 'CEPshVR.md'
      - 'e2D': 'e2D.md'
      - 'e2DL': 'e2DL.md'
      - 'e2DR': 'e2DR.md'
      - 'e2V': 'e2V.md'
      - 'e2VL': 'e2VL.md'
      - 'e2VR': 'e2VR.md'
      - 'e3D': 'e3D.md'
      - 'e3VL': 'e3VL.md'
      - 'e3VR': 'e3VR.md'
      - 'exc_cell': 'exc_cell.md'
      - 'exc_gl': 'exc_gl.md'
      - 'g1AL': 'g1AL.md'
      - 'g1AR': 'g1AR.md'
      - 'g1p': 'g1p.md'
      - 'g1P': 'g1P.md'
      - 'g2L': 'g2L.md'
      - 'g2R': 'g2R.md'
      - 'GLRDL': 'GLRDL.md'
      - 'GLRDR': 'GLRDR.md'
      - 'GLRL': 'GLRL.md'
      - 'GLRR': 'GLRR.md'
      - 'GLRVL': 'GLRVL.md'
      - 'GLRVR': 'GLRVR.md'
      - 'gonad': 'gonad.md'
      - 'hmc': 'hmc.md'
      - 'hyp': 'hyp.md'
      - 'int': 'int.md'
      - 'mc1DL': 'mc1DL.md'
      - 'mc1DR': 'mc1DR.md'
      - 'mc1V': 'mc1V.md'
      - 'mc2DL': 'mc2DL.md'
      - 'mc2DR': 'mc2DR.md'
      - 'mc2V': 'mc2V.md'
      - 'mc3DL': 'mc3DL.md'
      - 'mc3DR': 'mc3DR.md'
      - 'mc3V': 'mc3V.md'
      - 'proctodeum': 'proctodeum.md'
      - 'R1shL': 'R1shL.md'
      - 'R1shR': 'R1shR.md'
      - 'R1stL': 'R1stL.md'
      - 'R1stR': 'R1stR.md'
      - 'R2shL': 'R2shL.md'
      - 'R2shR': 'R2shR.md'
      - 'R2stL': 'R2stL.md'
      - 'R2stR': 'R2stR.md'
      - 'R3shL': 'R3shL.md'
      - 'R3shR': 'R3shR.md'
      - 'R3stL': 'R3stL.md'
      - 'R3stR': 'R3stR.md'
      - 'R4shL': 'R4shL.md'
      - 'R4shR': 'R4shR.md'
      - 'R4stL': 'R4stL.md'
      - 'R4stR': 'R4stR.md'
      - 'R5shL': 'R5shL.md'
      - 'R5shR': 'R5shR.md'
      - 'R5stL': 'R5stL.md'
      - 'R5stR': 'R5stR.md'
      - 'R6shL': 'R6shL.md'
      - 'R6shR': 'R6shR.md'
      - 'R6stL': 'R6stL.md'
      - 'R6stR': 'R6stR.md'
      - 'R7shL': 'R7shL.md'
      - 'R7shR': 'R7shR.md'
      - 'R7stL': 'R7stL.md'
      - 'R7stR': 'R7stR.md'
      - 'R8shL': 'R8shL.md'
      - 'R8shR': 'R8shR.md'
      - 'R8stL': 'R8stL.md'
      - 'R8stR': 'R8stR.md'
      - 'R9shL': 'R9shL.md'
      - 'R9shR': 'R9shR.md'
      - 'R9stL': 'R9stL.md'
      - 'R9stR': 'R9stR.md'
  - Resources:
    - 'Resources': 'Resources.md'
  - Python package:
    - 'Installation': 'Python.md'
    - 'API Reference': "api/summary/"
  - Help:
    - 'About & Contact': 'About.md'
    - 'Add your data set': 'AddDataset.md'