From d1c5d5552cca74789e4a0154d48370af63b2221c Mon Sep 17 00:00:00 2001
From: haoershi <haoershi@seas.upenn.edu>
Date: Mon, 22 Jan 2024 15:07:18 -0500
Subject: [PATCH] update

---
 demo/ana_pipeline.m                              | 11 +++++++----
 {matlab/tools/others => demo/helpfunc}/hex2rgb.m |  0
 matlab/iEEGPreprocess.m                          |  1 +
 matlab/tools/others/login_config_base.m          |  6 +++---
 4 files changed, 11 insertions(+), 7 deletions(-)
 rename {matlab/tools/others => demo/helpfunc}/hex2rgb.m (100%)
 mode change 100644 => 100755 matlab/iEEGPreprocess.m
 mode change 100644 => 100755 matlab/tools/others/login_config_base.m

diff --git a/demo/ana_pipeline.m b/demo/ana_pipeline.m
index ec91df9..1241d91 100644
--- a/demo/ana_pipeline.m
+++ b/demo/ana_pipeline.m
@@ -28,7 +28,10 @@
 % * Fieldtrip (optional for section 4)
 
 %% set path
-filename = which('ana_pipeline.m');
+filename = mfilename('fullpath');
+if contains(filename,'LiveEditorEvaluationHelper')
+    filename = matlab.desktop.editor.getActiveFilename;
+end
 [work_path, ~, ~] = fileparts(filename);
 cd(work_path);
 addpath(genpath('.')); % this should add analysis and matlab folder
@@ -45,7 +48,7 @@
             'name',{'Common average re-referencing'; 'Bipolar re-referencing';'Laplacian re-referencing'}, ...
             'col', mat2cell(hex2rgb({'#51b8bd','#de7862','#63804f'}),ones(3, 1)));
 
-ifRef = logical([1, 1, 1]); % <- make change here
+ifRef = logical([1, 1, 0]); % <- make change here
 params.ref = ref(ifRef);
 params.nRef = length(find(ifRef));
 params.LAR_loc = '';
@@ -96,11 +99,11 @@
 params.nSeg = 5; % <- make change here
 % 🟡dataset
 allDataset = {'HUP','MUSC'};
-params.dataset = 'MUSC'; % <- make change here
+params.dataset = 'HUP'; % <- make change here
 if exist(params.dataset,'dir') == 0
     mkdir(fullfile(work_path,params.dataset));
 end
-params.chans_to_use = 'LR'; % <- make change here, options gw, gray, white, LR
+params.chans_to_use = 'gw'; % <- make change here, options gw, gray, white, LR
 
 % print some basic characteristics
 fprintf('There are:\n');
diff --git a/matlab/tools/others/hex2rgb.m b/demo/helpfunc/hex2rgb.m
similarity index 100%
rename from matlab/tools/others/hex2rgb.m
rename to demo/helpfunc/hex2rgb.m
diff --git a/matlab/iEEGPreprocess.m b/matlab/iEEGPreprocess.m
old mode 100644
new mode 100755
index b6d64c9..c28141e
--- a/matlab/iEEGPreprocess.m
+++ b/matlab/iEEGPreprocess.m
@@ -298,6 +298,7 @@ function check_user(obj)
             if isempty(obj.users)
                 disp('Please set up iEEG login info before downloading data.');
                 obj.login_config();
+                obj.load_all_users();
             end
         end
 
diff --git a/matlab/tools/others/login_config_base.m b/matlab/tools/others/login_config_base.m
old mode 100644
new mode 100755
index c06c7ba..4d936f3
--- a/matlab/tools/others/login_config_base.m
+++ b/matlab/tools/others/login_config_base.m
@@ -4,9 +4,9 @@
     % added variable input for testing purposes
 
     p = inputParser;
-    addOptional(p, 'username', '', @(x) isstring(x) || ischar(x));
-    addOptional(p, 'password', '', @(x) isstring(x) || ischar(x));
-    parse(p, varargin);
+    addOptional(p, 'username', '',@(x) isstring(x) || ischar(x));
+    addOptional(p, 'password', '',@(x) isstring(x) || ischar(x));
+    parse(p, varargin{:});
     username = p.Results.username;
     password = p.Results.password;