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CMakeLists.txt
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CMakeLists.txt
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#-----------------------------------------------------------------------------
cmake_minimum_required(VERSION 2.8.2)
#-----------------------------------------------------------------------------
PROJECT(Slicer)
#-----------------------------------------------------------------------------
# See http://cmake.org/cmake/help/cmake-2-8-docs.html#section_Policies for details
#-----------------------------------------------------------------------------
SET(project_policies
CMP0001 # NEW: CMAKE_BACKWARDS_COMPATIBILITY should no longer be used.
CMP0002 # NEW: Logical target names must be globally unique.
CMP0003 # NEW: Libraries linked via full path no longer produce linker search paths.
CMP0004 # NEW: Libraries linked may NOT have leading or trailing whitespace.
CMP0005 # NEW: Preprocessor definition values are now escaped automatically.
CMP0006 # NEW: Installing MACOSX_BUNDLE targets requires a BUNDLE DESTINATION.
CMP0007 # NEW: List command no longer ignores empty elements.
CMP0008 # NEW: Libraries linked by full-path must have a valid library file name.
CMP0009 # NEW: FILE GLOB_RECURSE calls should not follow symlinks by default.
CMP0010 # NEW: Bad variable reference syntax is an error.
CMP0011 # NEW: Included scripts do automatic cmake_policy PUSH and POP.
CMP0012 # NEW: if() recognizes numbers and boolean constants.
CMP0013 # NEW: Duplicate binary directories are not allowed.
CMP0014 # NEW: Input directories must have CMakeLists.txt
)
FOREACH(policy ${project_policies})
IF(POLICY ${policy})
CMAKE_POLICY(SET ${policy} NEW)
ENDIF()
ENDFOREACH()
#-----------------------------------------------------------------------------
# CMake Function(s) and Macro(s)
#-----------------------------------------------------------------------------
INCLUDE(CMake/Slicer3PersistenceMacros.cmake)
INCLUDE(CMake/SlicerParseArgumentsMacro.cmake)
INCLUDE(CMake/Slicer3PluginsMacros.cmake)
INCLUDE(CMake/SlicerMacroEmptyExternalProject.cmake)
INCLUDE(CMake/SlicerFunctionCheckCompilerFlags.cmake)
#-----------------------------------------------------------------------------
# Update CMake module path
#------------------------------------------------------------------------------
SET(CMAKE_MODULE_PATH
${VTK_CMAKE_DIR}
${Slicer_SOURCE_DIR}/CMake
${Slicer_BINARY_DIR}/CMake
${CMAKE_MODULE_PATH}
)
SET(Slicer_CMAKE_DIR "${Slicer_SOURCE_DIR}/CMake" CACHE INTERNAL "")
#-----------------------------------------------------------------------------
# Platform check
#-----------------------------------------------------------------------------
SET(PLATFORM_CHECK true)
if(PLATFORM_CHECK)
# See CMake/Modules/Platform/Darwin.cmake)
# 6.x == Mac OSX 10.2 (Jaguar)
# 7.x == Mac OSX 10.3 (Panther)
# 8.x == Mac OSX 10.4 (Tiger)
# 9.x == Mac OSX 10.5 (Leopard)
# 10.x == Mac OSX 10.6 (Snow Leopard)
if (DARWIN_MAJOR_VERSION LESS "8")
message(FATAL_ERROR "Only Mac OSX >= 10.4 are supported !")
endif()
endif()
#-----------------------------------------------------------------------------
# Determine endian type
#-----------------------------------------------------------------------------
INCLUDE(TestBigEndian)
test_big_endian(CMAKE_WORDS_BIGENDIAN)
#-----------------------------------------------------------------------------
# Prerequisites
#-----------------------------------------------------------------------------
FIND_PACKAGE(Subversion)
IF(NOT Subversion_FOUND)
MESSAGE(FATAL_ERROR "error: Install SVN and try to re-configure")
ENDIF()
FIND_PACKAGE(Git)
IF(NOT GIT_FOUND)
MESSAGE(FATAL_ERROR "error: Install Git and try to re-configure")
ENDIF()
SET(minimum_required_qt_version "4.6.2")
#-----------------------------------------------------------------------------
# Superbuild Option - Enabled by default
#-----------------------------------------------------------------------------
OPTION(Slicer_SUPERBUILD "Build Slicer and the projects it depends on via SuperBuild.cmake." ON)
MARK_AS_ADVANCED(Slicer_SUPERBUILD)
#-----------------------------------------------------------------------------
# Build shared lib by default
#------------------------------------------------------------------------------
# option(BUILD_SHARED_LIBS "Build Slicer with shared libraries." ON)
SET(BUILD_SHARED_LIBS ON)
#-----------------------------------------------------------------------------
# Append the library version information to the library target properties.
#------------------------------------------------------------------------------
OPTION(Slicer_WITH_LIBRARY_VERSION "Build with library version information" OFF)
MARK_AS_ADVANCED(Slicer_WITH_LIBRARY_VERSION)
IF(Slicer_WITH_LIBRARY_VERSION)
SET(Slicer_LIBRARY_PROPERTIES ${Slicer_LIBRARY_PROPERTIES}
VERSION ${Slicer_VERSION_FULL}
SOVERSION ${Slicer_VERSION}
)
ENDIF()
#-----------------------------------------------------------------------------
# Additional Slicer Options
#-----------------------------------------------------------------------------
OPTION(BUILD_DOCUMENTATION "Build Slicer Documentation" OFF)
OPTION(BUILD_TESTING "Test the project" ON)
OPTION(WITH_MEMCHECK "Run tests through valgrind." OFF)
OPTION(WITH_COVERAGE "Enable/Disable coverage" OFF)
OPTION(Slicer_USE_VTK_DEBUG_LEAKS "Enable VTKs Debug Leaks functionality in both VTK and Slicer." ON)
OPTION(Slicer_BUILD_QTLOADABLEMODULES "Build Slicer QT Loadable Modules" ON)
MARK_AS_ADVANCED(Slicer_BUILD_QTLOADABLEMODULES)
OPTION(Slicer_BUILD_CLI "Build Slicer CLI Plugins" ON)
OPTION(Slicer_USE_PYTHONQT "Integrate a python-QT interpreter into Slicer." ON)
OPTION(Slicer_USE_PYTHONQT_WITH_TCL "Enable PythonQt Tcl adapter layer" ON)
#MARK_AS_ADVANCED(Slicer_USE_PYTHONQT_WITH_TCL)
OPTION(Slicer_USE_BatchMake "Build Slicer with BatchMake support." ON)
OPTION(Slicer_USE_MIDAS "Build Slicer with MIDAS support." OFF)
OPTION(Slicer_USE_OPENIGTLINK "Build Slicer with OpenIGTLink support." ON)
OPTION(Slicer_USE_OPENCV "Build Slicer with OpenCV support." OFF)
OPTION(Slicer_USE_CTKAPPLAUNCHER "Configure ctkAppLauncher." OFF)
MARK_AS_ADVANCED(Slicer_USE_CTKAPPLAUNCHER)
# Slicer implicitly uses Qt
SET(Slicer_USE_QT ON CACHE INTERNAL "Build Slicer with Qt")
# The following options are deprecated and will be removed
# when the port is complete
OPTION(Slicer_USE_KWWIDGETS "Deprecated - Build Slicer with KWWidgets" OFF)
MARK_AS_ADVANCED(Slicer_USE_KWWIDGETS)
if(Slicer_USE_KWWIDGETS)
OPTION(Slicer_USE_PYTHON "Deprecated - Integrate a python interpreter into Slicer." OFF)
OPTION(Slicer_BUILD_MODULES "Deprecated - Build Slicer Modules" ON)
MARK_AS_ADVANCED(Slicer_USE_PYTHON Slicer_BUILD_MODULES)
endif()
#-----------------------------------------------------------------------------
# CTestCustom
#-----------------------------------------------------------------------------
IF(BUILD_TESTING)
CONFIGURE_FILE(
CMake/CTestCustom.cmake.in
${CMAKE_CURRENT_BINARY_DIR}/CTestCustom.cmake
@ONLY)
ENDIF()
#-----------------------------------------------------------------------------
# Additional CXX/C Flags
#-----------------------------------------------------------------------------
SET(ADDITIONAL_C_FLAGS "" CACHE STRING "Additional C Flags")
MARK_AS_ADVANCED(ADDITIONAL_C_FLAGS)
SET(ADDITIONAL_CXX_FLAGS "" CACHE STRING "Additional CXX Flags")
MARK_AS_ADVANCED(ADDITIONAL_CXX_FLAGS)
#-----------------------------------------------------------------------------
# Set coverage Flags
#-----------------------------------------------------------------------------
IF(WITH_COVERAGE)
IF("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
SET(coverage_flags "-g -fprofile-arcs -ftest-coverage -O0 -DNDEBUG")
SET(COVERAGE_CXX_FLAGS ${coverage_flags})
SET(COVERAGE_C_FLAGS ${coverage_flags})
ENDIF()
ENDIF()
#-----------------------------------------------------------------------------
# Slicer C/CXX Flags
#-----------------------------------------------------------------------------
SET(Slicer_C_FLAGS "${CMAKE_C_FLAGS_INIT} ${COVERAGE_C_FLAGS} ${ADDITIONAL_C_FLAGS}")
SET(Slicer_CXX_FLAGS "${CMAKE_CXX_FLAGS_INIT} ${COVERAGE_CXX_FLAGS} ${ADDITIONAL_CXX_FLAGS}")
IF(CMAKE_COMPILER_IS_GNUCXX)
SET(cflags "-Wall -Wextra -Wpointer-arith -Winvalid-pch -Wcast-align -Wwrite-strings -D_FORTIFY_SOURCE=2")
SlicerFunctionCheckCompilerFlags("-fdiagnostics-show-option" cflags)
SlicerFunctionCheckCompilerFlags("-fstack-protector-all" cflags)
IF(MINGW)
# suppress warnings about auto imported symbols
SET(Slicer_CXX_FLAGS "-Wl,--enable-auto-import ${Slicer_CXX_FLAGS}")
ENDIF()
# Note: -Wold-style-cast is too verbose
# Let's postpone the use of -Wsign-promo
SET(Slicer_C_FLAGS "${cflags} ${Slicer_C_FLAGS}")
SET(Slicer_CXX_FLAGS "${cflags} -Wno-deprecated -Woverloaded-virtual -Wstrict-null-sentinel ${Slicer_CXX_FLAGS}")
ELSEIF(MSVC)
SET(cflags "/Zm1000 /W3")
SET(Slicer_C_FLAGS "${cflags} ${Slicer_C_FLAGS}")
SET(Slicer_CXX_FLAGS "${cflags} /EHsc /GR ${Slicer_CXX_FLAGS}")
ENDIF()
#-----------------------------------------------------------------------------
# Superbuild script
#-----------------------------------------------------------------------------
IF(Slicer_SUPERBUILD)
INCLUDE("${CMAKE_CURRENT_SOURCE_DIR}/SuperBuild.cmake")
RETURN()
ENDIF()
#-----------------------------------------------------------------------------
# Output directories.
#------------------------------------------------------------------------------
SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${Slicer_BINARY_DIR}/bin)
SET(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${Slicer_BINARY_DIR}/bin)
SET(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${Slicer_BINARY_DIR}/lib)
#-----------------------------------------------------------------------------
# Slicer version number.
#-----------------------------------------------------------------------------
SET(Slicer_VERSION_MAJOR "4")
SET(Slicer_VERSION_MINOR "0")
IF(NOT Slicer_VERSION_PATCH)
SET(Slicer_VERSION_PATCH "alpha")
ENDIF()
SET(Slicer_VERSION "${Slicer_VERSION_MAJOR}.${Slicer_VERSION_MINOR}")
SET(Slicer_VERSION_FULL "${Slicer_VERSION}.${Slicer_VERSION_PATCH}")
#-----------------------------------------------------------------------------
# Install directories
#------------------------------------------------------------------------------
SET(Slicer_INSTALL_BIN_DIR "bin")
SET(Slicer_INSTALL_LIB_DIR "lib/Slicer3")
SET(Slicer_INSTALL_INCLUDE_DIR "include/Slicer")
SET(Slicer_INSTALL_SHARE_DIR "share/Slicer")
SET(Slicer_INSTALL_ITKFACTORIES_DIR "${Slicer_INSTALL_LIB_DIR}/ITKFactories")
SET(Slicer_INSTALL_PLUGINS_BIN_DIR "${Slicer_INSTALL_LIB_DIR}/Plugins")
SET(Slicer_INSTALL_PLUGINS_LIB_DIR "${Slicer_INSTALL_LIB_DIR}/Plugins")
SET(Slicer_INSTALL_PLUGINS_INCLUDE_DIR "${Slicer_INSTALL_INCLUDE_DIR}/Plugins")
SET(Slicer_INSTALL_PLUGINS_SHARE_DIR "${Slicer_INSTALL_SHARE_DIR}/Plugins")
SET(Slicer_INSTALL_PLUGINS_CACHE_DIR "${Slicer_INSTALL_LIB_DIR}/PluginsCache")
SET(Slicer_INSTALL_MODULES_BIN_DIR "${Slicer_INSTALL_LIB_DIR}/Modules")
SET(Slicer_INSTALL_MODULES_LIB_DIR "${Slicer_INSTALL_LIB_DIR}/Modules")
SET(Slicer_INSTALL_MODULES_INCLUDE_DIR "${Slicer_INSTALL_INCLUDE_DIR}/Modules")
SET(Slicer_INSTALL_MODULES_SHARE_DIR "${Slicer_INSTALL_SHARE_DIR}/Modules")
SET(Slicer_HOME "${Slicer_BINARY_DIR}")
#-----------------------------------------------------------------------------
# Disable the warnings that DevStudio 2005 emits wrt to sprintf, strcpu, etc.
#
# On Visual Studio 8 MS deprecated C. This removes all 1.276E1265 security
# warnings (copied from ITK's CMake files so that ITK templated code will compile
# correctly).
IF(WIN32)
IF(NOT BORLAND)
IF(NOT CYGWIN)
IF(NOT MINGW)
ADD_DEFINITIONS(
-D_CRT_FAR_MAPPINGS_NO_DEPRECATE
-D_CRT_IS_WCTYPE_NO_DEPRECATE
-D_CRT_MANAGED_FP_NO_DEPRECATE
-D_CRT_NONSTDC_NO_DEPRECATE
-D_CRT_SECURE_NO_DEPRECATE
-D_CRT_SECURE_NO_DEPRECATE_GLOBALS
-D_CRT_SETERRORMODE_BEEP_SLEEP_NO_DEPRECATE
-D_CRT_TIME_FUNCTIONS_NO_DEPRECATE
-D_CRT_VCCLRIT_NO_DEPRECATE
-D_SCL_SECURE_NO_DEPRECATE
)
ENDIF()
ENDIF()
ENDIF()
ENDIF()
# Disable warning C4996: [...] This function or variable may be unsafe. [...]
# To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details
IF(MSVC90)
add_definitions(-D_CRT_SECURE_NO_WARNINGS)
ENDIF()
#-----------------------------------------------------------------------------
# Avoid linker bug in Mac OS 10.5
# See http://wiki.finkproject.org/index.php/Fink:Packaging:Preparing_for_10.5#OpenGL_Bug
#
IF(APPLE)
SET(CMAKE_SHARED_LINKER_FLAGS "-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib")
SET(CMAKE_EXE_LINKER_FLAGS "-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib")
ENDIF()
#-----------------------------------------------------------------------------
# Slicer include and libraries subdirectory
#
slicer3_set_persistent_property(Slicer_Libs_LIBRARIES "")
slicer3_set_persistent_property(Slicer_Base_LIBRARIES "")
slicer3_set_persistent_property(Slicer_Modules_LIBRARIES "")
slicer3_set_persistent_property(Slicer_QTModules_LIBRARIES "")
slicer3_set_persistent_property(Slicer_Libs_INCLUDE_DIRS "")
slicer3_set_persistent_property(Slicer_Base_INCLUDE_DIRS "")
slicer3_set_persistent_property(Slicer_Modules_INCLUDE_DIRS "")
slicer3_set_persistent_property(Slicer_QTModules_INCLUDE_DIRS "")
#-----------------------------------------------------------------------------
# Get sytem name and architecture
#-----------------------------------------------------------------------------
SET(Slicer_BUILD NA)
INCLUDE(CMake/DiscoverSystemNameAndBits.cmake)
MESSAGE(STATUS "Slicer_BUILD:${Slicer_BUILD}")
#-----------------------------------------------------------------------------
# Testing
#-----------------------------------------------------------------------------
IF(BUILD_TESTING)
SET(LAUNCH_EXE ${Slicer_BINARY_DIR}/Slicer3 --launch)
ENABLE_TESTING()
INCLUDE(CTest)
SET(CXX_TEST_PATH ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
MARK_AS_ADVANCED(TCL_TCLSH DART_ROOT)
CONFIGURE_FILE(
${Slicer_SOURCE_DIR}/CTestConfig.cmake
${Slicer_BINARY_DIR}/${Slicer_INSTALL_LIB_DIR}/CTestConfig.cmake
COPYONLY)
CONFIGURE_FILE(
${Slicer_SOURCE_DIR}/CMake/RemoveTemporaryFiles.cmake.in
${Slicer_BINARY_DIR}/CMake/RemoveTemporaryFiles.cmake
@ONLY)
CONFIGURE_FILE(
${Slicer_SOURCE_DIR}/CMake/Slicer3SampleBuildTest.cmake.in
${Slicer_BINARY_DIR}/CMake/Slicer3SampleBuildTest.cmake
@ONLY)
ENDIF()
#-----------------------------------------------------------------------------
# Since modules are KWWidgets based, unset there variables
IF(NOT Slicer_USE_KWWIDGETS)
# Since the module Logic is shared between QTModules and regular Modules,
# the associated BIN, LIB and INCLUDE directory shouldn't be unset
#UNSET(Slicer_INSTALL_MODULES_BIN_DIR)
#UNSET(Slicer_INSTALL_MODULES_LIB_DIR)
#UNSET(Slicer_INSTALL_MODULES_INCLUDE_DIR)
UNSET(Slicer_INSTALL_MODULES_SHARE_DIR)
ENDIF()
# Relax some constraints related to the build settings file. This was
# preventing people from using the same compiler but with a different generator,
# or just the same compiler installed in a non-standard location.
IF(Slicer_USE_KWWIDGETS)
SET(SKIP_KWWidgets_BUILD_SETTINGS_FILE 1)
ENDIF()
SET(SKIP_VTK_BUILD_SETTINGS_FILE 1)
SET(SKIP_ITK_BUILD_SETTINGS_FILE 1)
SET(SKIP_Teem_BUILD_SETTINGS_FILE 1)
#-----------------------------------------------------------------------------
# Python
#-----------------------------------------------------------------------------
IF(Slicer_USE_PYTHON OR Slicer_USE_PYTHONQT)
FIND_PACKAGE(PythonLibs REQUIRED)
FIND_PACKAGE(PythonInterp REQUIRED)
ENDIF()
#-----------------------------------------------------------------------------
# ITK
#-----------------------------------------------------------------------------
FIND_PACKAGE(ITK REQUIRED)
INCLUDE(${ITK_USE_FILE})
IF(Slicer_USE_KWWIDGETS)
#-----------------------------------------------------------------------------
# Deprecated - KWWidgets
#-----------------------------------------------------------------------------
FIND_PACKAGE(KWWidgets REQUIRED)
INCLUDE(${KWWidgets_USE_FILE})
ELSE()
#-----------------------------------------------------------------------------
# VTK
#-----------------------------------------------------------------------------
FIND_PACKAGE(VTK REQUIRED)
IF(NOT VTK_USE_QVTK)
MESSAGE(FATAL_ERROR "error: VTK was not configured to use QT, you probably need to recompile it with VTK_USE_GUISUPPORT ON, VTK_USE_QVTK ON, DESIRED_QT_VERSION 4 and QT_QMAKE_EXECUTABLE set appropriatly. Note that Qt >= ${minimum_required_qt_version} is *required*")
ENDIF()
INCLUDE(${VTK_USE_FILE})
ENDIF()
#-----------------------------------------------------------------------------
# Qt
#-----------------------------------------------------------------------------
IF(Slicer_USE_QT)
SET(extra_error_message)
IF(NOT DEFINED QT_QMAKE_EXECUTABLE AND EXISTS "${VTK_QT_QMAKE_EXECUTABLE}")
SET(QT_QMAKE_EXECUTABLE ${VTK_QT_QMAKE_EXECUTABLE})
SET(extra_error_message "You should probably reconfigure VTK.")
ENDIF()
FIND_PACKAGE(Qt4)
IF(NOT QT4_FOUND)
MESSAGE(FATAL_ERROR "error: Qt >= ${minimum_required_qt_version} was not found on your system. You probably need to set the QT_QMAKE_EXECUTABLE variable.")
ENDIF()
# Check version, note that ${QT_VERSION_PATCH} could also be used
IF("${QT_VERSION_MAJOR}.${QT_VERSION_MINOR}.${QT_VERSION_PATCH}" VERSION_LESS "${minimum_required_qt_version}")
MESSAGE(FATAL_ERROR "error: Slicer requires Qt >= ${minimum_required_qt_version} -- you cannot use Qt ${QT_VERSION_MAJOR}.${QT_VERSION_MINOR}.${QT_VERSION_PATCH}. ${extra_error_message}")
ENDIF()
MESSAGE(STATUS "Configuring Slicer with Qt ${QT_VERSION_MAJOR}.${QT_VERSION_MINOR}.${QT_VERSION_PATCH}")
# Enable modules
SET(QT_USE_QTNETWORK ON)
SET(QT_USE_QTTEST ${BUILD_TESTING})
# Includes Qt headers
INCLUDE(${QT_USE_FILE})
ENDIF()
#-----------------------------------------------------------------------------
# CTK
#-----------------------------------------------------------------------------
SET(git_repo http://github.com/commontk/CTK/raw/master/)
IF(Slicer_USE_QT)
FIND_PACKAGE(CTK REQUIRED)
INCLUDE(${CTK_USE_FILE})
# Update CMake module path
SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CTK_CMAKE_UTILITIES_DIR})
IF(Slicer_USE_PYTHONQT)
SET(PYTHONQT_INSTALL_DIR ${CTK_PYTHONQT_INSTALL_DIR})
LINK_DIRECTORIES(${PYTHONQT_INSTALL_DIR}/lib)
INCLUDE(${CTK_CMAKE_DIR}/ctkMacroWrapPythonQt.cmake)
ENDIF()
ENDIF()
#-----------------------------------------------------------------------------
# PythonQt
#-----------------------------------------------------------------------------
IF(Slicer_USE_QT)
IF(Slicer_USE_PYTHONQT)
IF(NOT VTK_WRAP_PYTHON)
MESSAGE(FATAL_ERROR "Since both Slicer_USE_QT and Slicer_USE_PYTHONQT are ON, VTK_WRAP_PYTHON is expected to be ON. Disable Slicer_USE_PYTHONQT or re-configure VTK with python wrapping.")
ENDIF()
# Include convenient script allowing to copy and compile python scripts
INCLUDE(${Slicer_CMAKE_DIR}/SlicerCompilePythonScripts.cmake)
# Enable qMRMLWidgets python wrapping
SET(qMRMLWidgets_WRAP_PYTHON OFF)
ENDIF()
ENDIF()
#-----------------------------------------------------------------------------
# Teem
#-----------------------------------------------------------------------------
FIND_PACKAGE(Teem REQUIRED)
INCLUDE(${Teem_USE_FILE})
#-----------------------------------------------------------------------------
# SlicerLibCurl
#-----------------------------------------------------------------------------
FIND_PACKAGE(SLICERLIBCURL REQUIRED)
INCLUDE(${SLICERLIBCURL_USE_FILE})
#-----------------------------------------------------------------------------
# BatchMake
#-----------------------------------------------------------------------------
IF(Slicer_USE_BatchMake)
FIND_PACKAGE(BatchMake REQUIRED)
INCLUDE(${BatchMake_USE_FILE})
ENDIF()
#-----------------------------------------------------------------------------
# OpenIGTLink
#-----------------------------------------------------------------------------
IF(Slicer_USE_OPENIGTLINK)
FIND_PACKAGE(OpenIGTLink REQUIRED)
INCLUDE(${OpenIGTLink_USE_FILE})
ENDIF()
#-----------------------------------------------------------------------------
# OpenCV (Built in Slicer3-lib)
#-----------------------------------------------------------------------------
IF(Slicer_USE_OPENCV)
FIND_PACKAGE(OpenCV REQUIRED)
IF(OPENCV_BUILD_SETTINGS_FILE AND NOT SKIP_OPENCV_BUILD_SETTINGS_FILE)
INCLUDE(${CMAKE_ROOT}/Modules/CMakeImportBuildSettings.cmake)
CMAKE_IMPORT_BUILD_SETTINGS(${OPENCV_BUILD_SETTINGS_FILE})
ENDIF()
# Add compiler flags needed to use OPENCV.
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OPENCV_REQUIRED_C_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OPENCV_REQUIRED_CXX_FLAGS}")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OPENCV_REQUIRED_LINK_FLAGS}")
SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} ${OPENCV_REQUIRED_LINK_FLAGS}")
SET(CMAKE_MODULE_LINKER_FLAGS "${CMAKE_MODULE_LINKER_FLAGS} ${OPENCV_REQUIRED_LINK_FLAGS}")
# Add include directories needed to use OPENCV.
INCLUDE_DIRECTORIES(BEFORE ${OPENCV_INCLUDE_DIRS})
# Add link directories needed to use OPENCV.
LINK_DIRECTORIES(${OPENCV_LIBRARY_DIRS})
#INCLUDE(${OPENCV_USE_FILE})
ENDIF()
#-----------------------------------------------------------------------------
# Need some Tcl/Tk info
#-----------------------------------------------------------------------------
IF(VTK_WRAP_TCL)
INCLUDE("${VTK_CMAKE_DIR}/vtkTclTkMacros.cmake")
VTK_GET_TCL_TK_VERSION(TCL_TK_MAJOR_VERSION TCL_TK_MINOR_VERSION)
SET(TCL_TK_VERSION_DOT "${TCL_TK_MAJOR_VERSION}.${TCL_TK_MINOR_VERSION}")
SET(TCL_TK_VERSION "${TCL_TK_MAJOR_VERSION}${TCL_TK_MINOR_VERSION}")
IF(Slicer_USE_KWWIDGETS)
INCLUDE("${KWWidgets_CMAKE_DIR}/KWWidgetsTclTkMacros.cmake")
incr_tcl_get_version(INCR_TCL_MAJOR_VERSION INCR_TCL_MINOR_VERSION)
SET(INCR_TCL_VERSION_DOT "${INCR_TCL_MAJOR_VERSION}.${INCR_TCL_MINOR_VERSION}")
SET(INCR_TCL_VERSION "${INCR_TCL_MAJOR_VERSION}${INCR_TCL_MINOR_VERSION}")
ENDIF()
ELSE()
# TODO: these should be passed in by SuperBuild
# For now, use 3.2 as a fallback - we haven't changed versions in years and probably
# never will, so this is always likely to work.
# This is needed so the launcher can set the paths to the correct subdirectories
# for incrTcl and incrTk
SET(TCL_TK_VERSION_DOT "8.4")
SET(TCL_TK_VERSION "84")
SET(INCR_TCL_VERSION_DOT "3.2")
SET(INCR_TCL_VERSION "32")
ENDIF()
#-----------------------------------------------------------------------------
# DEPRECATED - Remove the following section when port to Qt is completed
#-----------------------------------------------------------------------------
# Generate the default setup paths scripts.
# Generate some useful scripts that can be used to setup various environment
# variables and launch the executable properly against external packages.
#-----------------------------------------------------------------------------
IF(Slicer_USE_KWWIDGETS)
INCLUDE("${KWWidgets_CMAKE_DIR}/KWWidgetsPathsMacros.cmake")
SET(extra_dirs
"${Teem_DIR}/bin"
"${BatchMake_DIR}/bin"
"${OpenIGTLink_DIR}/bin"
"${Slicer_HOME}/${Slicer_INSTALL_PLUGINS_BIN_DIR}"
"${Slicer_HOME}/${Slicer_INSTALL_PLUGINS_LIB_DIR}"
"${Slicer_HOME}/${Slicer_INSTALL_MODULES_BIN_DIR}"
"${Slicer_HOME}/${Slicer_INSTALL_MODULES_LIB_DIR}"
)
kwwidgets_generate_setup_paths_scripts(
"${CMAKE_RUNTIME_OUTPUT_DIRECTORY}" "Slicer3SetupPaths"
"${extra_dirs}"
)
ENDIF()
#-----------------------------------------------------------------------------
# DEPRECATED - Remove the following section when port to Qt is completed
#-----------------------------------------------------------------------------
# VTK 5.0 does not have VTK_CMAKE_DIR
# Alternatively you could use KWWidget's wrapping, which encapsulate
# the differences between various VTK versions:
# INCLUDE("${KWWidgets_CMAKE_DIR}/KWWidgetsWrappingMacros.cmake")
# KWWidgets_WRAP_TCL(${LIB_NAME} LIB_TCL_SRCS "${LIB_SRCS}" "")
#-----------------------------------------------------------------------------
IF(Slicer_USE_KWWIDGETS)
IF(NOT VTK_CMAKE_DIR)
SET(VTK_CMAKE_DIR "${VTK_SOURCE_DIR}/CMake")
ENDIF()
INCLUDE("${VTK_CMAKE_DIR}/vtkWrapTcl.cmake")
ENDIF()
#-----------------------------------------------------------------------------
# DEPRECATED - Remove the following section when port to Qt is completed
#-----------------------------------------------------------------------------
# Check versions of VTK to track CVS HEAD
#-----------------------------------------------------------------------------
IF(Slicer_USE_KWWIDGETS)
FIND_PACKAGE(VTK REQUIRED)
IF(EXISTS ${VTK_CMAKE_DIR}/VTKVersionMacros.cmake)
INCLUDE(${VTK_CMAKE_DIR}/VTKVersionMacros.cmake)
else()
#MESSAGE("Using local version of VTKVersionMacros for compatibility.")
INCLUDE(${Slicer_SOURCE_DIR}/Scripts/VTKVersionMacros.cmake)
ENDIF()
vtk_get_source_revision_and_date(VTKsource_revision VTKsource_date)
IF(VTKsource_revision LESS 1.2196)
message(FATAL_ERROR "Sorry, your VTK library was last updated on ${VTKsource_date}. Its source revision, according to vtkKWWidgetsVersion.h, is ${VTKsource_revision}. Please update to a newer revision.")
ENDIF()
ENDIF()
#-----------------------------------------------------------------------------
# Set Slicer buildin libraries *_DIR variables
#-----------------------------------------------------------------------------
SET(TCLAP_DIR ${Slicer_BINARY_DIR}/Libs/SlicerExecutionModel/tclap)
SET(ModuleDescriptionParser_DIR ${Slicer_BINARY_DIR}/Libs/SlicerExecutionModel/ModuleDescriptionParser)
SET(GenerateCLP_DIR ${Slicer_BINARY_DIR}/Libs/SlicerExecutionModel/GenerateCLP)
SET(GenerateLM_DIR ${Slicer_BINARY_DIR}/Libs/GenerateLM)
SET(LoadableModule_DIR ${Slicer_BINARY_DIR}/Libs/LoadableModule)
SET(vtkITK_DIR ${Slicer_BINARY_DIR}/Libs/vtkITK)
#-----------------------------------------------------------------------------
# Qt Loadable Modules
#-----------------------------------------------------------------------------
IF(Slicer_USE_QT)
IF(Slicer_BUILD_QTLOADABLEMODULES)
ADD_DEFINITIONS(-DSlicer_BUILD_QTLOADABLEMODULES)
SET(Slicer_INSTALL_QTLOADABLEMODULES_BIN_DIR "${Slicer_INSTALL_LIB_DIR}/QTLoadableModules")
SET(Slicer_INSTALL_QTLOADABLEMODULES_LIB_DIR "${Slicer_INSTALL_LIB_DIR}/QTLoadableModules")
SET(Slicer_INSTALL_QTLOADABLEMODULES_INCLUDE_DIR "${Slicer_INSTALL_INCLUDE_DIR}/QTLoadableModules")
SET(Slicer_INSTALL_QTLOADABLEMODULES_SHARE_DIR "${Slicer_INSTALL_SHARE_DIR}/QTLoadableModules")
ENDIF()
ENDIF()
# --------------------------------------------------------------------------
# Configure and install headers
# --------------------------------------------------------------------------
SET(files
vtkSlicerConfigure.h
vtkSlicerVersionConfigure.h
Scripts/runValgrind.sh
Scripts/runValgrindForOneModule.sh
Scripts/runValgrindForOneModuleWithSlicer4AndQT.sh
Scripts/computeCodeCoverageLocally.sh
Scripts/computeCodeCoverageForOneTest.sh
Scripts/runExperimentalOffScreen.sh
)
FOREACH(f ${files})
CONFIGURE_FILE(
${CMAKE_CURRENT_SOURCE_DIR}/${f}.in
${CMAKE_CURRENT_BINARY_DIR}/${f}
)
ENDFOREACH()
INSTALL(FILES
"${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerConfigure.h"
"${CMAKE_CURRENT_BINARY_DIR}/vtkSlicerVersionConfigure.h"
DESTINATION ${Slicer_INSTALL_INCLUDE_DIR} COMPONENT Development
)
#-----------------------------------------------------------------------------
# Set C/CXX Flags
#-----------------------------------------------------------------------------
SET(CMAKE_CXX_FLAGS ${Slicer_CXX_FLAGS} CACHE STRING "CMake C Flags" FORCE)
SET(CMAKE_C_FLAGS ${Slicer_C_FLAGS} CACHE STRING "CMake CXX Flags" FORCE)
#-----------------------------------------------------------------------------
# Generate SlicerVersion.txt
#-----------------------------------------------------------------------------
INCLUDE(CMake/SlicerTodayMacro.cmake)
# Get build time
TODAY(Slicer_BUILDDATE)
# Note that Slicer_BUILD is set above
SET(Slicer_WC_URL NA)
SET(Slicer_WC_REVISION 0)
# Case where Slicer is checkout using SVN
IF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/.svn)
Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} Slicer3)
CONFIGURE_FILE(
${CMAKE_CURRENT_SOURCE_DIR}/SlicerVersion.txt.in
${Slicer_HOME}/lib/Slicer3/SlicerVersion.txt
)
ENDIF()
# Case where Slicer is checkout using Git-SVN
IF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/.git/svn/refs/remotes/trunk)
GIT_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} Slicer3)
CONFIGURE_FILE(
${CMAKE_CURRENT_SOURCE_DIR}/SlicerVersion.txt.in
${Slicer_HOME}/lib/Slicer3/SlicerVersion.txt
)
ENDIF()
#-----------------------------------------------------------------------------
# Includes
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES(
"${CMAKE_CURRENT_SOURCE_DIR}"
"${CMAKE_CURRENT_BINARY_DIR}"
)
#-----------------------------------------------------------------------------
# Subdirectories
#-----------------------------------------------------------------------------
ADD_SUBDIRECTORY(Libs)
ADD_SUBDIRECTORY(Base)
ADD_SUBDIRECTORY(Resources)
#-----------------------------------------------------------------------------
# At this point, let's not have the applications and modules guess which
# include paths or libraries they need, but use Slicer3_*_LIBRARIES and
# Slicer_*_INCLUDE_DIRS instead. As far as modules are concerned, both
# variables are actually set automatically by the import script when building
# against a Slicer build or installed tree. When in-source, we need to
# set both variables now. Retrieve them from the persistent property cache
# since they were collected in each subdir (which makes it impossible to
# use normal variables, since a new scope is created in each subdir).
#
slicer3_get_persistent_property(Slicer_Libs_LIBRARIES Slicer_Libs_LIBRARIES)
slicer3_get_persistent_property(Slicer_Base_LIBRARIES Slicer_Base_LIBRARIES)
slicer3_get_persistent_property(Slicer_Libs_INCLUDE_DIRS Slicer_Libs_INCLUDE_DIRS)
slicer3_get_persistent_property(Slicer_Base_INCLUDE_DIRS Slicer_Base_INCLUDE_DIRS)
#-----------------------------------------------------------------------------
# Module Logic
#-----------------------------------------------------------------------------
INCLUDE("${Slicer_CMAKE_DIR}/SlicerModuleLogicMacros.cmake")
IF(NOT Slicer_USE_KWWIDGETS)
# KWWidgets and Qt modules share the same logics typically located in the
# kwwdigets modules. When KWWidgets is not build, the logic are missing for Qt
# we need to manually add them:
# Loop through Modules subdirectory and try to include Logic subdirectory if it exists
FILE(GLOB modules_subdirs RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} Modules/*)
FOREACH(subdir ${modules_subdirs})
IF(IS_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/${subdir}/Logic)
ADD_SUBDIRECTORY(${subdir}/Logic)
ENDIF()
FILE(GLOB subsubdirs RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${subdir}/*)
FOREACH(subsubdir ${subsubdirs})
IF(IS_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/${subsubdir}/Logic)
ADD_SUBDIRECTORY(${subsubdir}/Logic)
ENDIF()
ENDFOREACH()
ENDFOREACH()
ENDIF()
#-----------------------------------------------------------------------------
# DEPRECATED - Remove the following section when port to Qt is completed
#-----------------------------------------------------------------------------
# Modules and CLI
#-----------------------------------------------------------------------------
IF(Slicer_USE_KWWIDGETS)
INCLUDE("${Slicer_CMAKE_DIR}/Slicer3ModulesMacros.cmake")
IF(Slicer_BUILD_MODULES)
ADD_SUBDIRECTORY(Modules)
else(Slicer_BUILD_MODULES)
# if Slicer_BUILD_CLI is ON, we still need at least the CommandLineModule
# so that we can have CLI, without all the other modules
IF(Slicer_BUILD_CLI)
ADD_SUBDIRECTORY(Modules/CommandLineModule)
ENDIF(Slicer_BUILD_CLI)
ENDIF(Slicer_BUILD_MODULES)
ENDIF()
#-----------------------------------------------------------------------------
# Module EMSegment libraries
#-----------------------------------------------------------------------------
# The EMSegment{Registration,Graph,Algorithm,MRML} libraries are built from the top-level
# CMakeLists.txt. Doing so allow to build these libraries also if Slicer_USE_KWWIDGETS is OFF
IF(Slicer_BUILD_MODULES OR Slicer_BUILD_QTLOADABLEMODULES)
INCLUDE("${Slicer_CMAKE_DIR}/Slicer3ModulesMacros.cmake")
ADD_SUBDIRECTORY(Modules/EMSegment/Algorithm)
ADD_SUBDIRECTORY(Modules/EMSegment/MRML)
ADD_SUBDIRECTORY(Modules/EMSegment/Registration)
ADD_SUBDIRECTORY(Modules/EMSegment/Graph)
ENDIF()
# Since EMSegment module expects Volume module and its associated library to be
# built beforehand,let's enfore that by building EMSegment here.
# Note that EMSegment has been commented in Modules/CMakeLists.txt
IF(Slicer_USE_KWWIDGETS)
IF(Slicer_BUILD_MODULES)
ADD_SUBDIRECTORY(Modules/EMSegment)
ENDIF()
ENDIF()
#-----------------------------------------------------------------------------
# Qt Loadable Modules
#-----------------------------------------------------------------------------
IF(Slicer_USE_QT AND Slicer_BUILD_QTLOADABLEMODULES)
ADD_SUBDIRECTORY(QTModules)
ENDIF()
#-----------------------------------------------------------------------------
# Applications - Added after Modules to capture the TractTracing in the correct ordering.
#-----------------------------------------------------------------------------
ADD_SUBDIRECTORY(Applications)
#-----------------------------------------------------------------------------
# Testing
#-----------------------------------------------------------------------------
IF(BUILD_TESTING)
ADD_SUBDIRECTORY(Testing)
ENDIF()
# Install testing data
INSTALL(DIRECTORY
Testing
DESTINATION ${Slicer_INSTALL_SHARE_DIR} COMPONENT Development
PATTERN ".svn" EXCLUDE
PATTERN "CMakeLists.txt" EXCLUDE
)
#-----------------------------------------------------------------------------
# Launcher for slicer
#-----------------------------------------------------------------------------
# let's build the launcher for Kww, KwwAndQt and also QtOnly slicer ...
ADD_SUBDIRECTORY(Utilities/Launcher)
# Compute Slicer_QT_PLUGIN_PATH used to configure launch.tcl.in
SET(Slicer_QT_PLUGIN_PATH "")
IF(Slicer_USE_QT)
SET(designer_launcher_project_name SlicerQT)
GET_TARGET_PROPERTY(output_directory ${designer_launcher_project_name} LIBRARY_OUTPUT_DIRECTORY)
SET(Slicer_QT_PLUGIN_PATH ${output_directory})
# on Mac we need to include the path of each Qt Framework in DYLD_LIBRARY_PATH in the launcher.
IF(APPLE)
SET (QTLIBLIST QTCORE QTGUI QTNETWORK QTXML QTTEST QTSQL QTOPENGL QTWEBKIT PHONON QTXMLPATTERNS)
FOREACH(qtlib ${QTLIBLIST})
IF(QT_${qtlib}_LIBRARY_RELEASE AND APPLE)
GET_FILENAME_COMPONENT(QT_FRAMEWORK_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
SET(Slicer_QT_FRAMEWORK_DIRS "lib/Qt/${QT_FRAMEWORK_NAME_tmp}/Versions/4:${Slicer_QT_FRAMEWORK_DIRS}")
ENDIF()
ENDFOREACH()
ENDIF()
# ctkAppLauncher for slicer
IF(Slicer_USE_CTKAPPLAUNCHER)
INCLUDE(${CTKAPPLAUNCHER_DIR}/CMake/ctkAppLauncher.cmake)
INCLUDE(${Slicer_CMAKE_DIR}/SlicerCTKAppLauncherSettings.cmake)
ctkAppLauncherConfigure(
APPLICATION_PATH ${Slicer_BINARY_DIR}/bin/SlicerQT-real${CMAKE_EXECUTABLE_SUFFIX}
APPLICATION_INSTALL_SUBDIR ${Slicer_INSTALL_BIN_DIR}
APPLICATION_NAME Slicer
SPLASH_IMAGE_PATH ${Slicer_SOURCE_DIR}/Applications/SlicerQT/Resources/Images/SlicerSplashScreen.png
SPLASH_IMAGE_INSTALL_SUBDIR ${Slicer_INSTALL_BIN_DIR}
SPLASHSCREEN_HIDE_DELAY_MS 3000
ADDITIONAL_HELP_SHORT_ARG "-h"
ADDITIONAL_HELP_LONG_ARG "--help"
ADDITIONAL_NOSPLASH_LONG_ARG "--no-splash"
DESTINATION_DIR ${Slicer_BINARY_DIR}
LIBRARY_PATHS_BUILD "${SLICER_LIBRARY_PATHS_BUILD}"
PATHS_BUILD "${SLICER_PATHS_BUILD}"
ENVVARS_BUILD "${SLICER_ENVVARS_BUILD}"
LIBRARY_PATHS_INSTALLED "${SLICER_LIBRARY_PATHS_INSTALLED}"
PATHS_INSTALLED "${SLICER_PATHS_INSTALLED}"
ENVVARS_INSTALLED "${SLICER_ENVVARS_INSTALLED}"
)
INSTALL(PROGRAMS "${Slicer_BINARY_DIR}/Slicer${CMAKE_EXECUTABLE_SUFFIX}" DESTINATION ".")
INSTALL(
FILES "${Slicer_SOURCE_DIR}/Applications/SlicerQT/Resources/Images/SlicerSplashScreen.png"
DESTINATION ${Slicer_INSTALL_BIN_DIR}
)
INSTALL(
FILES "${Slicer_BINARY_DIR}/SlicerLauncherSettingsToInstall.ini"
DESTINATION ${Slicer_INSTALL_BIN_DIR}
RENAME SlicerLauncherSettings.ini
)
ENDIF()
ENDIF(Slicer_USE_QT)
CONFIGURE_FILE(
${Slicer_SOURCE_DIR}/launch.tcl.in
"${Slicer_BINARY_DIR}/${Slicer_INSTALL_LIB_DIR}/launch.tcl"
)
INSTALL(
FILES "${Slicer_BINARY_DIR}/${Slicer_INSTALL_LIB_DIR}/launch.tcl"
DESTINATION ${Slicer_INSTALL_LIB_DIR}
)
#-----------------------------------------------------------------------------
# Launcher for QTDesigner
#-----------------------------------------------------------------------------
IF(Slicer_USE_QT)
ADD_SUBDIRECTORY(Utilities/Designer)
ENDIF()
#-----------------------------------------------------------------------------
# Package slicer
#-----------------------------------------------------------------------------
ADD_SUBDIRECTORY(Utilities/Package)
#-----------------------------------------------------------------------------
# Documentation
#-----------------------------------------------------------------------------
IF(BUILD_DOCUMENTATION)
ADD_SUBDIRECTORY(Utilities/Doxygen)
ENDIF()
# Add CMake directory so that install rules associated with *.cmake files are evaluated
ADD_SUBDIRECTORY(CMake)
#-----------------------------------------------------------------------------
# Set up for building against a Slicer build tree and a Slicer installation
#
INCLUDE(${Slicer_SOURCE_DIR}/GenerateSlicerConfig.cmake)
CONFIGURE_FILE(${Slicer_SOURCE_DIR}/UseSlicer.cmake.in
${Slicer_BINARY_DIR}/UseSlicer.cmake COPYONLY IMMEDIATE)
INSTALL(FILES
# ${Slicer_BINARY_DIR}/Slicer3BuildSettings.cmake
${Slicer_BINARY_DIR}/UseSlicer.cmake
${Slicer_BINARY_DIR}/Utilities/SlicerConfig.cmake
${Slicer_BINARY_DIR}/lib/Slicer3/SlicerVersion.txt
DESTINATION ${Slicer_INSTALL_LIB_DIR}
COMPONENT Development
)