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cannot install git2r on macos Sierra through install.packages("git2r") #259

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surfing1231 opened this issue Oct 7, 2016 · 22 comments
Open

cannot install git2r on macos Sierra through install.packages("git2r") #259

surfing1231 opened this issue Oct 7, 2016 · 22 comments

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@surfing1231
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surfing1231 commented Oct 7, 2016 •
edited
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 > install.packages("git2r")
Installing package into ‘/Users/xxx/Library/R/3.2/library’
(as ‘lib’ is unspecified)
trying URL 'http://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/git2r_0.15.0.tar.gz'
Content type 'application/octet-stream' length 1084978 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

* installing *source* package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
checking build system type... x86_64-apple-darwin16.0.0
checking host system type... x86_64-apple-darwin16.0.0
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for brew... yes
checking for library containing inflate... -lz
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for libssl... yes
checking for library containing EVP_EncryptInit... none required
checking for library containing SSL_library_init... none required
checking for library containing libssh2_version... -lssh2
checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... /bin/sh: tools/config.rpath: No such file or directory
done
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for iconv... yes
checking for working iconv... yes
checking how to link with libiconv... -liconv
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking for curl-config... /Users/xxx/anaconda/bin/curl-config
checking for the version of libcurl... 7.49.0
checking whether libcurl is usable... yes
checking for curl_free... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void*... 8
checking for struct stat.st_atimespec... yes
checking for futimens... no
checking for qsort_r... yes
checking for qsort_s... no
checking if '-Wno-unused-function' is supported... yes

  ----- Results of the git2r package configure -----

    OpenSSL to talk over HTTPS...........: yes
    LibSSH2 to enable the SSH transport..: yes

  --------------------------------------------------

configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r.c -o git2r.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_arg.c -o git2r_arg.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_blame.c -o git2r_blame.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_blob.c -o git2r_blob.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_branch.c -o git2r_branch.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_checkout.c -o git2r_checkout.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_clone.c -o git2r_clone.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_commit.c -o git2r_commit.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_config.c -o git2r_config.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_cred.c -o git2r_cred.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_diff.c -o git2r_diff.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_error.c -o git2r_error.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_graph.c -o git2r_graph.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_index.c -o git2r_index.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_libgit2.c -o git2r_libgit2.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_merge.c -o git2r_merge.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_note.c -o git2r_note.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_object.c -o git2r_object.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_odb.c -o git2r_odb.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_oid.c -o git2r_oid.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_push.c -o git2r_push.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_reference.c -o git2r_reference.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_reflog.c -o git2r_reflog.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_remote.c -o git2r_remote.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_repository.c -o git2r_repository.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_reset.c -o git2r_reset.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_revparse.c -o git2r_revparse.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_revwalk.c -o git2r_revwalk.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_signature.c -o git2r_signature.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_stash.c -o git2r_stash.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_status.c -o git2r_status.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_tag.c -o git2r_tag.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_transfer.c -o git2r_transfer.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c git2r_tree.c -o git2r_tree.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/annotated_commit.c -o libgit2/src/annotated_commit.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/attr.c -o libgit2/src/attr.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/attrcache.c -o libgit2/src/attrcache.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/attr_file.c -o libgit2/src/attr_file.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/blame.c -o libgit2/src/blame.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/blame_git.c -o libgit2/src/blame_git.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/blob.c -o libgit2/src/blob.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/branch.c -o libgit2/src/branch.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/buffer.c -o libgit2/src/buffer.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/buf_text.c -o libgit2/src/buf_text.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/cache.c -o libgit2/src/cache.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/checkout.c -o libgit2/src/checkout.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/cherrypick.c -o libgit2/src/cherrypick.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/clone.c -o libgit2/src/clone.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/commit.c -o libgit2/src/commit.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/commit_list.c -o libgit2/src/commit_list.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/config.c -o libgit2/src/config.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/config_cache.c -o libgit2/src/config_cache.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/config_file.c -o libgit2/src/config_file.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/crlf.c -o libgit2/src/crlf.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/curl_stream.c -o libgit2/src/curl_stream.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/date.c -o libgit2/src/date.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/delta-apply.c -o libgit2/src/delta-apply.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/delta.c -o libgit2/src/delta.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/describe.c -o libgit2/src/describe.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff.c -o libgit2/src/diff.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_driver.c -o libgit2/src/diff_driver.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_file.c -o libgit2/src/diff_file.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_patch.c -o libgit2/src/diff_patch.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_print.c -o libgit2/src/diff_print.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_stats.c -o libgit2/src/diff_stats.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_tform.c -o libgit2/src/diff_tform.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/diff_xdiff.c -o libgit2/src/diff_xdiff.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/errors.c -o libgit2/src/errors.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/fetch.c -o libgit2/src/fetch.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/fetchhead.c -o libgit2/src/fetchhead.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/filebuf.c -o libgit2/src/filebuf.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/fileops.c -o libgit2/src/fileops.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/filter.c -o libgit2/src/filter.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/fnmatch.c -o libgit2/src/fnmatch.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/global.c -o libgit2/src/global.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/graph.c -o libgit2/src/graph.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/hash.c -o libgit2/src/hash.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/hashsig.c -o libgit2/src/hashsig.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/ident.c -o libgit2/src/ident.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/ignore.c -o libgit2/src/ignore.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/index.c -o libgit2/src/index.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/indexer.c -o libgit2/src/indexer.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/iterator.c -o libgit2/src/iterator.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/merge.c -o libgit2/src/merge.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/merge_file.c -o libgit2/src/merge_file.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/message.c -o libgit2/src/message.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/mwindow.c -o libgit2/src/mwindow.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/netops.c -o libgit2/src/netops.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/notes.c -o libgit2/src/notes.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/object_api.c -o libgit2/src/object_api.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/object.c -o libgit2/src/object.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/odb.c -o libgit2/src/odb.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/odb_loose.c -o libgit2/src/odb_loose.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/odb_mempack.c -o libgit2/src/odb_mempack.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/odb_pack.c -o libgit2/src/odb_pack.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/oidarray.c -o libgit2/src/oidarray.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/oid.c -o libgit2/src/oid.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/openssl_stream.c -o libgit2/src/openssl_stream.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/pack.c -o libgit2/src/pack.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/pack-objects.c -o libgit2/src/pack-objects.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/path.c -o libgit2/src/path.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/pathspec.c -o libgit2/src/pathspec.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/pool.c -o libgit2/src/pool.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/posix.c -o libgit2/src/posix.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/pqueue.c -o libgit2/src/pqueue.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/push.c -o libgit2/src/push.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/rebase.c -o libgit2/src/rebase.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/refdb.c -o libgit2/src/refdb.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/refdb_fs.c -o libgit2/src/refdb_fs.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/reflog.c -o libgit2/src/reflog.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/refs.c -o libgit2/src/refs.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/refspec.c -o libgit2/src/refspec.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/remote.c -o libgit2/src/remote.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/repository.c -o libgit2/src/repository.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/reset.c -o libgit2/src/reset.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/revert.c -o libgit2/src/revert.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/revparse.c -o libgit2/src/revparse.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/revwalk.c -o libgit2/src/revwalk.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/settings.c -o libgit2/src/settings.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/sha1_lookup.c -o libgit2/src/sha1_lookup.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/signature.c -o libgit2/src/signature.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/socket_stream.c -o libgit2/src/socket_stream.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/sortedcache.c -o libgit2/src/sortedcache.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/stash.c -o libgit2/src/stash.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/status.c -o libgit2/src/status.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/strmap.c -o libgit2/src/strmap.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/submodule.c -o libgit2/src/submodule.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/sysdir.c -o libgit2/src/sysdir.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/tag.c -o libgit2/src/tag.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/thread-utils.c -o libgit2/src/thread-utils.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/tls_stream.c -o libgit2/src/tls_stream.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/trace.c -o libgit2/src/trace.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transaction.c -o libgit2/src/transaction.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transport.c -o libgit2/src/transport.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/tree.c -o libgit2/src/tree.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/tree-cache.c -o libgit2/src/tree-cache.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/tsort.c -o libgit2/src/tsort.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/util.c -o libgit2/src/util.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/vector.c -o libgit2/src/vector.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/zstream.c -o libgit2/src/zstream.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/auth.c -o libgit2/src/transports/auth.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/cred.c -o libgit2/src/transports/cred.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/cred_helpers.c -o libgit2/src/transports/cred_helpers.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/git.c -o libgit2/src/transports/git.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/http.c -o libgit2/src/transports/http.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/local.c -o libgit2/src/transports/local.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/smart.c -o libgit2/src/transports/smart.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/smart_pkt.c -o libgit2/src/transports/smart_pkt.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/smart_protocol.c -o libgit2/src/transports/smart_protocol.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/transports/ssh.c -o libgit2/src/transports/ssh.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/unix/map.c -o libgit2/src/unix/map.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/unix/realpath.c -o libgit2/src/unix/realpath.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xdiffi.c -o libgit2/src/xdiff/xdiffi.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xemit.c -o libgit2/src/xdiff/xemit.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xhistogram.c -o libgit2/src/xdiff/xhistogram.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xmerge.c -o libgit2/src/xdiff/xmerge.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xpatience.c -o libgit2/src/xdiff/xpatience.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xprepare.c -o libgit2/src/xdiff/xprepare.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/src/xdiff/xutils.c -o libgit2/src/xdiff/xutils.o
gcc -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser  -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libssh2/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_COMMON_CRYPTO -DGIT_SSH -DGIT_CURL -DGIT_USE_ICONV -DGIT_ARCH_64 -DGIT_USE_STAT_ATIMESPEC -DHAVE_QSORT_R -I/Users/xxx/anaconda/include -I/usr/local/include   -Wno-deprecated-declarations -Wno-unused-function  -fPIC  -g -O2  -c libgit2/deps/http-parser/http_parser.c -o libgit2/deps/http-parser/http_parser.o
ar rcs libmygit.a libgit2/src/annotated_commit.o libgit2/src/attr.o libgit2/src/attrcache.o libgit2/src/attr_file.o libgit2/src/blame.o libgit2/src/blame_git.o libgit2/src/blob.o libgit2/src/branch.o libgit2/src/buffer.o libgit2/src/buf_text.o libgit2/src/cache.o libgit2/src/checkout.o libgit2/src/cherrypick.o libgit2/src/clone.o libgit2/src/commit.o libgit2/src/commit_list.o libgit2/src/config.o libgit2/src/config_cache.o libgit2/src/config_file.o libgit2/src/crlf.o libgit2/src/curl_stream.o libgit2/src/date.o libgit2/src/delta-apply.o libgit2/src/delta.o libgit2/src/describe.o libgit2/src/diff.o libgit2/src/diff_driver.o libgit2/src/diff_file.o libgit2/src/diff_patch.o libgit2/src/diff_print.o libgit2/src/diff_stats.o libgit2/src/diff_tform.o libgit2/src/diff_xdiff.o libgit2/src/errors.o libgit2/src/fetch.o libgit2/src/fetchhead.o libgit2/src/filebuf.o libgit2/src/fileops.o libgit2/src/filter.o libgit2/src/fnmatch.o libgit2/src/global.o libgit2/src/graph.o libgit2/src/hash.o libgit2/src/hashsig.o libgit2/src/ident.o libgit2/src/ignore.o libgit2/src/index.o libgit2/src/indexer.o libgit2/src/iterator.o libgit2/src/merge.o libgit2/src/merge_file.o libgit2/src/message.o libgit2/src/mwindow.o libgit2/src/netops.o libgit2/src/notes.o libgit2/src/object_api.o libgit2/src/object.o libgit2/src/odb.o libgit2/src/odb_loose.o libgit2/src/odb_mempack.o libgit2/src/odb_pack.o libgit2/src/oidarray.o libgit2/src/oid.o libgit2/src/openssl_stream.o libgit2/src/pack.o libgit2/src/pack-objects.o libgit2/src/path.o libgit2/src/pathspec.o libgit2/src/pool.o libgit2/src/posix.o libgit2/src/pqueue.o libgit2/src/push.o libgit2/src/rebase.o libgit2/src/refdb.o libgit2/src/refdb_fs.o libgit2/src/reflog.o libgit2/src/refs.o libgit2/src/refspec.o libgit2/src/remote.o libgit2/src/repository.o libgit2/src/reset.o libgit2/src/revert.o libgit2/src/revparse.o libgit2/src/revwalk.o libgit2/src/settings.o libgit2/src/sha1_lookup.o libgit2/src/signature.o libgit2/src/socket_stream.o libgit2/src/sortedcache.o libgit2/src/stash.o libgit2/src/status.o libgit2/src/strmap.o libgit2/src/submodule.o libgit2/src/sysdir.o libgit2/src/tag.o libgit2/src/thread-utils.o libgit2/src/tls_stream.o libgit2/src/trace.o libgit2/src/transaction.o libgit2/src/transport.o libgit2/src/tree.o libgit2/src/tree-cache.o libgit2/src/tsort.o libgit2/src/util.o libgit2/src/vector.o libgit2/src/zstream.o libgit2/src/transports/auth.o libgit2/src/transports/cred.o libgit2/src/transports/cred_helpers.o libgit2/src/transports/git.o libgit2/src/transports/http.o libgit2/src/transports/local.o libgit2/src/transports/smart.o libgit2/src/transports/smart_pkt.o libgit2/src/transports/smart_protocol.o libgit2/src/transports/ssh.o libgit2/src/unix/map.o libgit2/src/unix/realpath.o libgit2/src/xdiff/xdiffi.o libgit2/src/xdiff/xemit.o libgit2/src/xdiff/xhistogram.o libgit2/src/xdiff/xmerge.o libgit2/src/xdiff/xpatience.o libgit2/src/xdiff/xprepare.o libgit2/src/xdiff/xutils.o libgit2/deps/http-parser/http_parser.o 
gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o git2r.so git2r.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -L. -lmygit -lssh2 -lssl -lcrypto -lz -lz -L/usr/local/opt/openssl/lib -L/usr/local/opt/libssh2/lib -L/Users/xxx/anaconda/lib -lcurl -lssl -lcrypto -lssl -lcrypto -lz -liconv -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/xxx/Library/R/3.2/library/git2r/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘summary’ from package ‘base’ in package ‘git2r’
Creating a generic function for ‘diff’ from package ‘base’ in package ‘git2r’
Creating a generic function for ‘merge’ from package ‘base’ in package ‘git2r’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘git2r’
Creating a generic function for ‘head’ from package ‘utils’ in package ‘git2r’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Users/xxx/Library/R/3.2/library/git2r/libs/git2r.so':
  dlopen(/Users/xxx/Library/R/3.2/library/git2r/libs/git2r.so, 6): Library not loaded: @rpath/libz.1.dylib
  Referenced from: /Users/xxx/Library/R/3.2/library/git2r/libs/git2r.so
  Reason: image not found
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/xxx/Library/R/3.2/library/git2r’

The downloaded source packages are in
    ‘/private/var/folders/g7/fcpplc8j0ps_jkrkyc58l1680000gq/T/RtmpeX6QES/downloaded_packages’
Warning message:
In install.packages("git2r") :
  installation of package ‘git2r’ had non-zero exit status
>
@surfing1231
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surfing1231 commented Oct 7, 2016 •
edited
Loading 

> version
               _                           
platform       x86_64-apple-darwin16.0.0   
arch           x86_64                      
os             darwin16.0.0                
system         x86_64, darwin16.0.0        
status                                     
major          3                           
minor          2.5                         
year           2016                        
month          04                          
day            14                          
svn rev        70478                       
language       R                           
version.string R version 3.2.5 (2016-04-14)
nickname       Very, Very Secure Dishes

@surfing1231
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but I tried installing ggplot2 through install.packages("ggplot2"), it worked. So I do not think this is a Mac OS system compatibility problem.

@trosendal
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The manual indicates:

"SystemRequirements: zlib headers and library. OpenSSL headers and library. LibSSH2 (optional on non-Windows) to enable the SSH transport."

https://cran.r-project.org/web/packages/git2r/index.html

Are you perhaps missing zlib?

@swvanderlaan
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swvanderlaan commented Jan 18, 2017 •
edited
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Hi,
I have a similar issue. Zlib is a part of macOS. Here is my error code. Anyone a solution?
Thanks!
Sander

installing source package ‘git2r’ ...
package ‘git2r’ successfully unpacked and MD5 sums checked
checking build system type... x86_64-apple-darwin16.3.0
checking host system type... x86_64-apple-darwin16.3.0
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for brew... yes
checking for library containing inflate... no
configure: error: in /private/var/folders/xk/dfj20kgd56xg8796xh874tjr0000gn/T/RtmpseXmyo/R.INSTALL32356e59fd77/git2r':
configure: error:

The zlib library that is required to build
git2r was not found.

Please install:
zlib1g-dev (package on e.g. Debian and Ubuntu)
zlib-devel (package on e.g. Fedora, CentOS and RHEL)
and try again.

If the zlib library is installed on your
system but the git2r configuration is
unable to find it, you can specify the
include and lib path to zlib with:
R CMD INSTALL --configure-args='--with-zlib-include=INCLUDE_PATH --with-zlib-lib=LIB_PATH' git2r

See `config.log' for more details
ERROR: configuration failed for package ‘git2r’

  • removing ‘/usr/local/lib/R/3.3/site-library/git2r’
  • restoring previous ‘/usr/local/lib/R/3.3/site-library/git2r’

The downloaded source packages are in
‘/private/var/folders/xk/dfj20kgd56xg8796xh874tjr0000gn/T/RtmpcfKZgy/downloaded_packages’
Warning messages:
1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, :
installation of package ‘gdsfmt’ had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, :
installation of package ‘git2r’ had non-zero exit status`

@stewid
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stewid commented Jan 18, 2017

Could you please try to install the binary format of git2r from CRAN.

@swvanderlaan
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Hi,

I just did. No effect. I get this error below. It has to do with the fact that R can't seem to find zlib... But than I don't understand what I should fill in in "INCLUDE_PATH" or how to find zlib even on Mac OS X Sierra.

Thanks!

Sander

install.packages("git2r")
Installing package into ‘/usr/local/lib/R/3.3/site-library’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
HTTPS CRAN mirror

1: 0-Cloud [https] 2: Algeria [https]
3: Australia (Canberra) [https] 4: Australia (Melbourne) [https]
5: Australia (Perth) [https] 6: Austria [https]
7: Belgium (Ghent) [https] 8: Brazil (RJ) [https]
9: Brazil (SP 1) [https] 10: Bulgaria [https]
11: Canada (MB) [https] 12: Chile 1 [https]
13: Chile 2 [https] 14: China (Beijing) [https]
15: China (Hefei) [https] 16: China (Lanzhou) [https]
17: Colombia (Cali) [https] 18: Czech Republic [https]
19: Denmark [https] 20: France (Lyon 1) [https]
21: France (Lyon 2) [https] 22: France (Marseille) [https]
23: France (Montpellier) [https] 24: France (Paris 2) [https]
25: Germany (Falkenstein) [https] 26: Germany (Münster) [https]
27: Iceland [https] 28: India [https]
29: Ireland [https] 30: Italy (Padua) [https]
31: Japan (Tokyo) [https] 32: Malaysia [https]
33: Mexico (Mexico City) [https] 34: New Zealand [https]
35: Norway [https] 36: Philippines [https]
37: Russia (Moscow) [https] 38: Serbia [https]
39: Spain (A Coruña) [https] 40: Spain (Madrid) [https]
41: Sweden [https] 42: Switzerland [https]
43: Taiwan (Chungli) [https] 44: Turkey (Denizli) [https]
45: UK (Bristol) [https] 46: UK (Cambridge) [https]
47: UK (London 1) [https] 48: USA (CA 1) [https]
49: USA (IA) [https] 50: USA (IN) [https]
51: USA (KS) [https] 52: USA (MI 1) [https]
53: USA (TN) [https] 54: USA (TX) [https]
55: (HTTP mirrors)

Selection: 55
HTTP CRAN mirror

1: 0-Cloud 2: Algeria
3: Argentina (La Plata) 4: Australia (Canberra)
5: Australia (Melbourne) 6: Austria
7: Belgium (Antwerp) 8: Belgium (Ghent)
9: Brazil (BA) 10: Brazil (PR)
11: Brazil (RJ) 12: Brazil (SP 1)
13: Brazil (SP 2) 14: Bulgaria
15: Canada (BC) 16: Canada (MB)
17: Canada (NS) 18: Canada (ON)
19: Chile 1 20: China (Beijing)
21: China (Hefei) 22: China (Lanzhou)
23: China (Xiamen) 24: Colombia (Cali)
25: Czech Republic 26: Denmark
27: Ecuador 28: El Salvador
29: Estonia 30: France (Lyon 2)
31: France (Marseille) 32: France (Montpellier)
33: France (Paris 1) 34: France (Paris 2)
35: Germany (Falkenstein) 36: Germany (Göttingen)
37: Germany (Münster) 38: Greece
39: Hungary 40: Iceland
41: India 42: Iran
43: Ireland 44: Italy (Milano)
45: Italy (Padua) 46: Italy (Palermo)
47: Japan (Tokyo) 48: Korea (Seoul 1)
49: Korea (Seoul 2) 50: Korea (Ulsan)
51: Lebanon 52: Malaysia
53: Mexico (Mexico City) 54: Mexico (Texcoco)
55: Netherlands (Amsterdam) 56: Netherlands (Utrecht)
57: New Zealand 58: Norway
59: Philippines 60: Portugal (Lisbon)
61: Portugal (Porto) 62: Russia (Moscow)
63: Singapore 64: South Africa (Cape Town)
65: South Africa (Johannesburg) 66: Spain (A Coruña)
67: Spain (Madrid) 68: Sweden
69: Switzerland 70: Taiwan (Chungli)
71: Taiwan (Taipei) 72: Thailand
73: Turkey (Denizli) 74: Turkey (Mersin)
75: UK (Bristol) 76: UK (Cambridge)
77: UK (London 1) 78: UK (London 2)
79: UK (St Andrews) 80: USA (CA 1)
81: USA (CA 2) 82: USA (IA)
83: USA (IN) 84: USA (KS)
85: USA (MI 1) 86: USA (MO)
87: USA (NC) 88: USA (OH 1)
89: USA (OH 2) 90: USA (OR)
91: USA (PA 1) 92: USA (PA 2)
93: USA (TN) 94: USA (TX)
95: Venezuela

Selection: 56
trying URL 'http://cran-mirror.cs.uu.nl/src/contrib/git2r_0.18.0.tar.gz'
Content type 'application/x-gzip' length 1122935 bytes (1.1 MB)

downloaded 1.1 MB

  • installing source package ‘git2r’ ...
    ** package ‘git2r’ successfully unpacked and MD5 sums checked
    checking build system type... x86_64-apple-darwin16.4.0
    checking host system type... x86_64-apple-darwin16.4.0
    checking for gcc... gcc
    checking whether the C compiler works... yes
    checking for C compiler default output file name... a.out
    checking for suffix of executables...
    checking whether we are cross compiling... no
    checking for suffix of object files... o
    checking whether we are using the GNU C compiler... yes
    checking whether gcc accepts -g... yes
    checking for gcc option to accept ISO C89... none needed
    checking for brew... yes
    checking for library containing inflate... no
    configure: error: in `/private/var/folders/xk/dfj20kgd56xg8796xh874tjr0000gn/T/RtmpbVPTJk/R.INSTALLcd5c1f7fde2d/git2r':
    configure: error:

The zlib library that is required to build
git2r was not found.

Please install:
zlib1g-dev (package on e.g. Debian and Ubuntu)
zlib-devel (package on e.g. Fedora, CentOS and RHEL)
and try again.

If the zlib library is installed on your
system but the git2r configuration is
unable to find it, you can specify the
include and lib path to zlib with:
R CMD INSTALL --configure-args='--with-zlib-include=INCLUDE_PATH --with-zlib-lib=LIB_PATH' git2r

See `config.log' for more details
ERROR: configuration failed for package ‘git2r’

  • removing ‘/usr/local/lib/R/3.3/site-library/git2r’

The downloaded source packages are in
‘/private/var/folders/xk/dfj20kgd56xg8796xh874tjr0000gn/T/RtmpRNkU3D/downloaded_packages’
Warning message:
In install.packages("git2r") :
installation of package ‘git2r’ had non-zero exit status

@trosendal
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According to the manual of install.package, you should define that you want a binary install, otherwise it will install from source on your system. Do as follows:

install.packages("git2r", type = 'mac.binary.mavericks')

However, the package will be built for OSX Mavericks and you are using OSX Sierra; so I don't know if that will work.

@colinbrislawn
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Thank you for this comment!

On a new mac without the full developer setup, this command lets you install git2r without needing zlib or openssl. This is perfect for new R users.

install.packages("git2r", type = 'mac.binary.mavericks')

Also works great on OSX Sierra.

@denismolin
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maybe this will help: https://anaconda.org/r/r-git2r

@vv111y vv111y mentioned this issue Feb 23, 2018
Closed
@AceM1188
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AceM1188 commented May 1, 2018

Was wondering if any of these solutions (or that mentioned by IRkernel/IRkernel#542) worked for R version 3.5.0?

I've tried installing devtools or git2r by install.packages("devtools") or install.packages("git2r") but neither are installing for me. When installing I get the aforementioned errors "...had non-zero exit status".

The error message I receive for installing git2r (either by
install.packages("git2r", type = 'mac.binary.elcapitan')
or
install.packages("git2r", type = 'mac.binary.mavericks') is:

Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning: unable to access index for repository https://cran.revolutionanalytics.com/bin/macosx/elcapitan/contrib/3.5:
cannot open URL 'https://cran.revolutionanalytics.com/bin/macosx/elcapitan/contrib/3.5/PACKAGES'
package ‘git2r’ is available as a source package but not as a binary
Warning message:
package ‘git2r’ is not available (as a binary package for R version 3.5.0)`

So looks like version R 3.5.0 is not yet compatible? Any thoughts for work arounds for this?

@trosendal
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You are mis-specifying 'el-capitan' as 'elcapitan'. Also, I could not resolve the host: "cran.revolution..." that you are using so you could try the r-studio host below:

install.packages("git2r", 
                  repos = "https://cran.r-project.org", 
                  type = "mac.binary.el-capitan")

Also, for future readers of this thread you can find the appropriate name of the binaries for various versions of OSX in the manual for install.packages: http://stat.ethz.ch/R-manual/R-devel/library/utils/html/install.packages.html

@AceM1188
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AceM1188 commented May 3, 2018

Thanks @trosendal, that worked.

@devssh
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devssh commented Sep 28, 2018

I am on high sierra 10.13.4. It does not work,some methods say R 3.5.1 is not supported others just say libgit2 is to blame, which is funny because git2r is needed for devtools, which is needed for tensorflow on R in mac. So no tensorflow on R in mac Sierra as of Sep 2018.

@stewid
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stewid commented Sep 28, 2018

@devssh tensorflow does not depend on git2r

@souravbhabesh
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I was facing the same issue while trying to install devtools. I am on High Sierra Version 10.13.6.

The below steps led to successful installation of devtools.

install.packages("git2r",
repos = "https://cran.r-project.org",
type = "mac.binary.el-capitan")

install.packages("devtools")

Hopefully this will help others facing this problem.

@devssh
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devssh commented Sep 29, 2018 •
edited
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@stewid I am using https://github.com/rstudio/tensorflow which is using devtools. Devtools needs git2r and is the go to alternative approach for building from source if things are incompatible. using packages.install("tensorflow") does not work so i tried to install it via this tensorflow devtools alternate method. but cmake cannot build it on my configuration of Macos High Sierra 10.13.4 and R 3.5.1. You see High Sierra is backwards compatible with Sierra, but has at max support for Mavericks in this issue #204 where I added my logs. Some people claim it is an issue with path configuration and permissions but those are being taken care of by anaconda3 pretty well usually, however I assume someone in this project would have better info on how to fix the paths.

@stewid
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stewid commented Sep 29, 2018

@devssh does it work to install git2r using

install.packages('git2r', type='source', configure.vars='autobrew=yes')

@devssh
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devssh commented Sep 29, 2018 •
edited
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Hi, I tried the command and it failed

install.packages('git2r', type='source', configure.vars='autobrew=yes')
trying URL 'https://cran.rstudio.com/src/contrib/git2r_0.23.0.tar.gz'
Content type 'application/x-gzip' length 1150314 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

* installing *source* package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
checking build system type... x86_64-apple-darwin17.5.0
checking host system type... x86_64-apple-darwin17.5.0
checking for gcc... x86_64-apple-darwin13.4.0-clang
checking whether the C compiler works... no
configure: error: in `/private/var/folders/bf/vzp8t8p53xj53_nyf42t5g880000gp/T/RtmpFutTBQ/R.INSTALL639f7410bdc/git2r':
configure: error: C compiler cannot create executables
See `config.log' for more details
ERROR: configuration failed for package ‘git2r’
* removing ‘/Users/devashishsood/anaconda3/envs/py36/lib/R/library/git2r’
Warning in install.packages :
  installation of package ‘git2r’ had non-zero exit status

The downloaded source packages are in
	‘/private/var/folders/bf/vzp8t8p53xj53_nyf42t5g880000gp/T/RtmpKHmr8L/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

How do I check this config.log, it might give you more info, it says c compiler doesn't work ?
It says the error is C compiler cannot create executables
I also checked my gcc version

gcc --version
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 9.1.0 (clang-902.0.39.1)
Target: x86_64-apple-darwin17.5.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

@trosendal
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@devssh It's not clear if you tried the suggestion by @souravbhabesh to install from the binary.

@devssh
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devssh commented Oct 1, 2018 •
edited
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Hi @trosendal I tried the following as suggested by @souravbhabesh

install.packages("git2r",
repos = "https://cran.r-project.org",
type = "mac.binary.el-capitan")

install.packages("devtools")

and then when I do

library(devtools)
devtools::install_github("rstudio/tensorflow")

Rstudio crashes and restarts R session aborted. R encountered a fatal error. The session was terminated. Start new Session? because I'm running an el-capitan binary on high sierra.

Also there is no binary for sierra.

install.packages("git2r",
+                  repos = "https://cran.r-project.org",
+                  type = "mac.binary.sierra")
Warning in install.packages :
  unable to access index for repository https://cran.r-project.org/bin/macosx/sierra/contrib/3.4:
  cannot open URL 'https://cran.r-project.org/bin/macosx/sierra/contrib/3.4/PACKAGES'

   package ‘git2r’ is available as a source package but not as a binary

Warning in install.packages :
  package ‘git2r’ is not available (as a binary package for R version 3.4.3)

@souravbhabesh you said you were on high sierra? Which version of R are you using? How did you check that it works? Its interesting to note that library(devtools) does not cause a restart but using devtools crashes Rstudio.
I will also try updating Macos from 10.13.4 to 10.13.6. My R version is 3.5.1
El-capitan was released in 2015 and Sierra has breaking changes wrt backward compatibility. I don't think a binary from el-capitan would work on sierra! How did you make it work?!

@jim-baskin
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brew install libgit2
on mac first

@tansaku
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tansaku commented Jun 1, 2022

I've tried install lbgit2, zlib, openssl, devtools and cannot seem to get git2r version 0.23.0 installed on monterey intel chip or M1 :-(

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